Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007091

Physical Location & Seq

Genomic Coordinates Forward (+)

12247275 .. 12248217

Gene Structure 943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGTGAGCTCTTTGGAAAGGCTACTGGTTGCTGCCGAGGCCAGGGTGGTTCCATGCACATGTTTTCGAAAGAGTATAATGTACTCGGTGGGTTTGCATTTATTGGTGAAGGGATCCCAGTGGCAACAGGTGCAGCATTCTCCTCTAAGTACCGGAGGGAAGTGATGAAACAGGCAGACTGTGATCATGTAACATTGGCATTTTTCGGAGATGGAACTGCTAATAATGGCCAGTTCTTTGAGTGTTTGAACATGGCAGCATTGTGGAAATTGCCAATTATTTTTGTTGTGGAGAACAATTTGTGGGCTATTGGTATGTCACATTTGAGGGCTACTTCTGATCCCGAAATTTGGAAGAAGGGGCCTGCATTCGGTATGCCGGGTGTTCATGTGGACGGGATGGATGTGTTGAAGGTGAGGGAGGTGGCAAAGGAGGCTATTGGAAGGGCCAGGAGAGGAGAAGGGCCAACTTTGGTGGAATGTGAAACATACAGATTCAGAGGACACTCATTGGCTGATCCCGATGAGCTTCGTGACCCTGCTGAGAAGGCACACTACGCTGCCAGAGACCCCATCACAGCCCTCAAGAAATACATACTTGAGAATAATTTGGCGACTGAACAAGACTTGAAGGCCATCCATAAGAAGATCGACGAGGTGGTTGAGGATGCCGTTGAGTTTGCAGATGAGAGTCCTCTTCCACCTCGCAGCCAGCTGCTCGAGAATGTGTTTGCCGATCCCAAGGGCTTTGGAATCGGGCCTGATGGCAGCTACAGATGCGAGGATCCTAAGTTCACTCAGGGCACAGCTCACGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

E1_dh

Protein Analysis

273

Amino Acids

29.88

Weight (kDa)

5.54

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	3 - 234	2.5e-65	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01090
fragaria_vesca	FvH4_7g17660
malus_domestica	MD07G1159600.v1.1
prunus_persica	Prupe.2G197700_v2.0.a1
pyrus_communis	pycom01g11280 pycom01g11290 pycom07g15610
rosa_chinensis	RchiOBHm_Chr1g0334521 RchiOBHm_Chr1g0361101
rosa_laevigata	RLG00000027748 RLG00000029447
rosa_multiflora	Rmu_sc0003333.1_g000006 Rmu_sc0034406.1_g000004 Rmu_ssc0000404.1_g000009
rosa_roxburghii	Rroxscaffold_4G00295430 Rroxscaffold_4G00316780
rosa_rugosa	Rorug01G0285600
rosa_samantha	Rh1AG296900 Rh1BG261200 Rh1CG278500 Rh1DG143600 Rh1DG291200
rosa_wichuraiana	Rw0G002890 Rw1G011520 Rw1G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	7 cut(s)	109, 122, 335, 512, 731, 779, 792
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	348
AfaI	GTAC	2 cut(s)	84, 152
AfiI	CCNNNNNNNGG	3 cut(s)	43, 351, 371
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	250, 412, 631
AjiI	CACGTC	1 cut(s)	814
AjnI	CCWGG	2 cut(s)	42, 449
AloI	GAACNNNNNNTCC	2 cut(s)	776, 808
AluBI	AGCT	5 cut(s)	10, 529, 715, 771, 809
AluI	AGCT	5 cut(s)	10, 529, 715, 771, 809
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	7 cut(s)	109, 122, 335, 512, 731, 779, 792
Ama87I	CYCGRG	1 cut(s)	719
AoxI	GGCC	7 cut(s)	40, 229, 362, 447, 464, 633, 758
ApeKI	GCWGC	7 cut(s)	33, 134, 257, 560, 708, 715, 768
ApoI	RAATTY	1 cut(s)	348
AspS9I	GGNCC	4 cut(s)	362, 447, 464, 758
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	2 cut(s)	119, 427
AsuII	TTCGAA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	719
BaeGI	GKGCMC	1 cut(s)	806
BalI	TGGCCA	1 cut(s)	231
BamHI	GGATCC	2 cut(s)	114, 784
BanII	GRGCYC	1 cut(s)	12
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	7 cut(s)	20, 146, 269, 547, 702, 720, 780
BccI	CCATC	5 cut(s)	206, 394, 581, 644, 758
BceAI	ACGGC	1 cut(s)	656
BciT130I	CCWGG	2 cut(s)	44, 451
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	772
BisI	GCNGC	7 cut(s)	34, 135, 258, 561, 709, 716, 769
BlsI	GCNGC	7 cut(s)	35, 136, 259, 562, 710, 717, 770
Bme1390I	CCNGG	3 cut(s)	44, 381, 451
BmeT110I	CYCGRG	1 cut(s)	719
BmgBI	CACGTC	1 cut(s)	814
BmgT120I	GGNCC	4 cut(s)	362, 447, 464, 758
BmiI	GGNNCC	4 cut(s)	52, 116, 363, 786
BmrFI	CCNGG	3 cut(s)	44, 381, 451
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	658, 767
BmuI	ACTGGG	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	569, 620
BpuMI	CCSGG	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	561
BsaJI	CCNNGG	3 cut(s)	37, 43, 741
BsaWI	WCCGGW	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 351, 371
Bse1I	ACTGG	3 cut(s)	31, 119, 232
BseBI	CCWGG	2 cut(s)	44, 451
BseDI	CCNNGG	3 cut(s)	37, 43, 741
BseGI	GGATG	4 cut(s)	405, 409, 636, 673
BseLI	CCNNNNNNNGG	3 cut(s)	43, 351, 371
BseMII	CTCAG	2 cut(s)	534, 812
BseNI	ACTGG	3 cut(s)	31, 119, 232
BseRI	GAGGAG	2 cut(s)	133, 471
BseSI	GKGCMC	1 cut(s)	806
BseXI	GCAGC	7 cut(s)	20, 146, 269, 547, 702, 720, 780
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	7 cut(s)	42, 231, 364, 449, 466, 635, 760
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	2 cut(s)	154, 380
BslI	CCNNNNNNNGG	3 cut(s)	43, 351, 371
BsmAI	GTCTC	1 cut(s)	561
BsmI	GAATGC	2 cut(s)	137, 368
BsnI	GGCC	7 cut(s)	42, 231, 364, 449, 466, 635, 760
Bso31I	GGTCTC	1 cut(s)	561
BsoBI	CYCGRG	1 cut(s)	719
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	12, 806
Bsp143I	GATC	7 cut(s)	114, 184, 340, 517, 648, 736, 784
BspANI	GGCC	7 cut(s)	42, 231, 364, 449, 466, 635, 760
BspCNI	CTCAG	2 cut(s)	535, 811
BspLI	GGNNCC	4 cut(s)	52, 116, 363, 786
BspPI	GGATC	7 cut(s)	109, 122, 335, 512, 731, 779, 792
BspT104I	TTCGAA	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	561
BsrI	ACTGG	3 cut(s)	31, 119, 232
BssECI	CCNNGG	3 cut(s)	37, 43, 741
BssMI	GATC	7 cut(s)	114, 184, 340, 517, 648, 736, 784
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	44, 451
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	702
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	366, 713
BstDEI	CTNAG	4 cut(s)	147, 543, 789, 798
BstF5I	GGATG	4 cut(s)	405, 409, 636, 673
BstKTI	GATC	7 cut(s)	117, 187, 343, 520, 651, 739, 787
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	7 cut(s)	114, 184, 340, 517, 648, 736, 784
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 131, 434, 548, 557, 777
BstNI	CCWGG	2 cut(s)	44, 451
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	3 cut(s)	42, 379, 449
BstSFI	CTRYAG	1 cut(s)	772
BstSLI	GKGCMC	1 cut(s)	806
BstV1I	GCAGC	7 cut(s)	20, 146, 269, 547, 702, 720, 780
BstX2I	RGATCY	2 cut(s)	114, 784
BstYI	RGATCY	2 cut(s)	114, 784
BsuRI	GGCC	7 cut(s)	42, 231, 364, 449, 466, 635, 760
BtrI	CACGTC	1 cut(s)	814
BtsCI	GGATG	4 cut(s)	405, 409, 636, 673
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	366, 713
Cfr13I	GGNCC	4 cut(s)	362, 447, 464, 758
Csp6I	GTAC	2 cut(s)	83, 151
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	5 cut(s)	55, 61, 188, 253, 389
CviQI	GTAC	2 cut(s)	83, 151
DdeI	CTNAG	4 cut(s)	147, 543, 789, 798
DpnI	GATC	7 cut(s)	116, 186, 342, 519, 650, 738, 786
DpnII	GATC	7 cut(s)	114, 184, 340, 517, 648, 736, 784
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
Ecl136II	GAGCTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	561
Eco53kI	GAGCTC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	42, 449
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	5 cut(s)	58, 64, 191, 256, 392
FatI	CATG	5 cut(s)	54, 60, 187, 252, 388
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	7 cut(s)	34, 135, 258, 561, 709, 716, 769
FokI	GGATG	4 cut(s)	412, 416, 623, 680
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	7 cut(s)	34, 135, 258, 561, 709, 716, 769
GluI	GCNGC	7 cut(s)	34, 135, 258, 561, 709, 716, 769
HaeIII	GGCC	7 cut(s)	42, 231, 364, 449, 466, 635, 760
HapII	CCGG	2 cut(s)	154, 380
Hin1II	CATG	5 cut(s)	58, 64, 191, 256, 392
HinfI	GANTC	3 cut(s)	495, 691, 753
HpaII	CCGG	2 cut(s)	154, 380
HphI	GGTGA	2 cut(s)	119, 427
Hpy166II	GTNNAC	2 cut(s)	394, 795
Hpy188I	TCNGA	3 cut(s)	209, 340, 500
Hpy188III	TCNNGA	5 cut(s)	344, 521, 533, 586, 721
Hpy8I	GTNNAC	2 cut(s)	394, 795
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	7 cut(s)	104, 352, 406, 438, 455, 541, 625
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	5 cut(s)	58, 98, 134, 368, 683
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 131, 434, 548, 557, 777
HpyF3I	CTNAG	4 cut(s)	147, 543, 789, 798
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	5 cut(s)	58, 64, 191, 256, 392
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	114, 184, 340, 517, 648, 736, 784
Lsp1109I	GCAGC	7 cut(s)	20, 146, 269, 547, 702, 720, 780
LweI	GCATC	2 cut(s)	658, 767
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	3 cut(s)	190, 318, 533
MalI	GATC	7 cut(s)	116, 186, 342, 519, 650, 738, 786
MboI	GATC	7 cut(s)	114, 184, 340, 517, 648, 736, 784
MboII	GAAGA	3 cut(s)	367, 658, 689
MflI	RGATCY	2 cut(s)	114, 784
MhlI	GDGCHC	2 cut(s)	12, 806
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	5 cut(s)	269, 276, 298, 348, 607
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	700
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	715
MspI	CCGG	2 cut(s)	154, 380
MspR9I	CCNGG	3 cut(s)	44, 381, 451
Mva1269I	GAATGC	2 cut(s)	137, 368
MvaI	CCWGG	2 cut(s)	44, 451
MwoI	GCNNNNNNNGC	6 cut(s)	39, 131, 434, 548, 557, 777
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	7 cut(s)	114, 184, 340, 517, 648, 736, 784
NlaIII	CATG	5 cut(s)	58, 64, 191, 256, 392
NlaIV	GGNNCC	4 cut(s)	52, 116, 363, 786
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	2 cut(s)	318, 533
NspI	RCATGY	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	68
PaeR7I	CTCGAG	1 cut(s)	719
PciI	ACATGT	1 cut(s)	60
PctI	GAATGC	2 cut(s)	137, 368
PfeI	GAWTC	2 cut(s)	495, 753
PkrI	GCNGC	7 cut(s)	35, 136, 259, 562, 710, 717, 770
PleI	GAGTC	1 cut(s)	699
PpsI	GAGTC	1 cut(s)	699
PscI	ACATGT	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	42, 449
PspGI	CCWGG	2 cut(s)	42, 449
PspN4I	GGNNCC	4 cut(s)	52, 116, 363, 786
PspPI	GGNCC	4 cut(s)	362, 447, 464, 758
PsuI	RGATCY	2 cut(s)	114, 784
PvuII	CAGCTG	1 cut(s)	715
RsaI	GTAC	2 cut(s)	84, 152
RsaNI	GTAC	2 cut(s)	83, 151
RseI	CAYNNNNRTG	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	12
SatI	GCNGC	7 cut(s)	34, 135, 258, 561, 709, 716, 769
Sau3AI	GATC	7 cut(s)	114, 184, 340, 517, 648, 736, 784
Sau96I	GGNCC	4 cut(s)	362, 447, 464, 758
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	3 cut(s)	44, 381, 451
SduI	GDGCHC	2 cut(s)	12, 806
SfaNI	GCATC	2 cut(s)	658, 767
SfcI	CTRYAG	1 cut(s)	772
Sfr274I	CTCGAG	1 cut(s)	719
SfuI	TTCGAA	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	719
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	3 cut(s)	584, 599, 719
SmoI	CTYRAG	3 cut(s)	584, 599, 719
Sse9I	AATT	5 cut(s)	269, 276, 298, 348, 607
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	3 cut(s)	42, 379, 449
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	3 cut(s)	68, 651, 720
TasI	AATT	5 cut(s)	269, 276, 298, 348, 607
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	495, 753
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	2 cut(s)	318, 533
TseI	GCWGC	7 cut(s)	33, 134, 257, 560, 708, 715, 768
Tsp45I	GTSAC	2 cut(s)	318, 533
TspDTI	ATGAA	2 cut(s)	182, 377
TspRI	CASTG	1 cut(s)	126
XapI	RAATTY	1 cut(s)	348
XceI	RCATGY	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.