RLG00000029447

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007091
Physical Location & Seq
Forward (+)
38866414 .. 38867417
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029447

Sequence Viewer

Length: 471 bp
ATGGAGGTCGATCAAAGCTCCGAAGTGCTGTTCTGCCAGCCCCCAGCTCAAAGAAAATGGATCAGCACGCACTGTCCACTACTACAAAAAGTTAATCTCACAACACTAATCAGGAGAGGAGAGGGACCAACCTTGGTGAAATGTGAAACATATAGGTTTAGAATGATCCCGATGAGCTCCGTGACCCTGGTTACTGAGAAGGCACACTATGCTGCCAGAGACCCCATCACAGCCTTGAAGAAATACATATTCGAGCACAACTTAGCCAGTGAACAAGAGCAGAAGGCCATAGATAAGAAGATAGATGAGGTGCTTGAGGATGCCGTTGAGTTCGCCTATGAGAGCGCGCTCCCACCTCGCAGCCAGCTGCTCGAGAATGTGTTTGCCGATCCTATAGGCTTTGGAAAAGGGCCTGATGGCCGCTACAGGTGTGAGGACCCTAACTTTACTCAAGGCACTGCCGAAGTCTAG

Protein Analysis

157

Amino Acids

17.69

Weight (kDa)

5.44

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_dh PF00676 38 - 115 2.9e-09 Dehydrogenase E1 component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 347
AciI CCGC 1 cut(s) 421
AclWI GGATC 3 cut(s) 68, 160, 383
AcoI YGGCCR 1 cut(s) 418
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 4 cut(s) 18, 47, 177, 367
AluI AGCT 4 cut(s) 18, 47, 177, 367
Alw21I GWGCWC 2 cut(s) 179, 258
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 3 cut(s) 68, 160, 383
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 3 cut(s) 285, 410, 418
ApeKI GCWGC 3 cut(s) 212, 360, 367
AspLEI GCGC 2 cut(s) 347, 349
AspS9I GGNCC 3 cut(s) 125, 410, 436
AsuHPI GGTGA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 2 cut(s) 125, 436
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 179, 258
BbvI GCAGC 3 cut(s) 199, 354, 372
BccI CCATC 2 cut(s) 233, 410
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 469
BfmI CTRYAG 2 cut(s) 393, 424
BisI GCNGC 4 cut(s) 213, 361, 368, 421
BlsI GCNGC 4 cut(s) 214, 362, 369, 422
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 2 cut(s) 125, 436
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 3 cut(s) 125, 410, 436
BmiI GGNNCC 2 cut(s) 126, 438
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 310
BpuEI CTTGAG 2 cut(s) 335, 435
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 132, 186
Bse1I ACTGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 132, 186
BseGI GGATG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 267
BsePI GCGCGC 1 cut(s) 345
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 199, 354, 372
BseYI CCCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 3 cut(s) 287, 412, 420
BsiHKAI GWGCWC 2 cut(s) 179, 258
BsiHKCI CYCGRG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 3 cut(s) 287, 412, 420
Bso31I GGTCTC 1 cut(s) 213
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 179, 258
Bsp143I GATC 4 cut(s) 10, 60, 165, 388
BspACI CCGC 1 cut(s) 421
BspANI GGCC 3 cut(s) 287, 412, 420
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 2 cut(s) 126, 438
BspPI GGATC 3 cut(s) 68, 160, 383
BspTNI GGTCTC 1 cut(s) 213
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 132, 186
BssHII GCGCGC 1 cut(s) 345
BssMI GATC 4 cut(s) 10, 60, 165, 388
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 4 cut(s) 38, 68, 347, 365
BstDEI CTNAG 2 cut(s) 195, 262
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 1 cut(s) 347
BstHHI GCGC 2 cut(s) 347, 349
BstKTI GATC 4 cut(s) 13, 63, 168, 391
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 4 cut(s) 10, 60, 165, 388
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstSFI CTRYAG 2 cut(s) 393, 424
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 199, 354, 372
BsuRI GGCC 3 cut(s) 287, 412, 420
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 3 cut(s) 70, 274, 456
Cac8I GCNNGC 4 cut(s) 38, 68, 347, 365
CfoI GCGC 2 cut(s) 347, 349
Cfr13I GGNCC 3 cut(s) 125, 410, 436
DdeI CTNAG 2 cut(s) 195, 262
DpnI GATC 4 cut(s) 12, 62, 167, 390
DpnII GATC 4 cut(s) 10, 60, 165, 388
EaeI YGGCCR 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 2 cut(s) 125, 436
Eco53kI GAGCTC 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 177
EcoO109I RGGNCCY 2 cut(s) 410, 436
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 132
FaiI YATR 7 cut(s) 151, 153, 210, 248, 290, 339, 395
FaqI GGGAC 1 cut(s) 138
Fnu4HI GCNGC 4 cut(s) 213, 361, 368, 421
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 4 cut(s) 213, 361, 368, 421
FspBI CTAG 1 cut(s) 469
GlaI GCGC 2 cut(s) 346, 348
GluI GCNGC 4 cut(s) 213, 361, 368, 421
GsaI CCCAGC 1 cut(s) 47
HaeIII GGCC 3 cut(s) 287, 412, 420
HhaI GCGC 2 cut(s) 347, 349
Hin6I GCGC 2 cut(s) 345, 347
HinP1I GCGC 2 cut(s) 345, 347
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 77, 272
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 3 cut(s) 112, 169, 373
Hpy8I GTNNAC 2 cut(s) 77, 272
HpyAV CCTTC 2 cut(s) 193, 277
HpyCH4III ACNGT 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 195, 262
HspAI GCGC 2 cut(s) 345, 347
Kzo9I GATC 4 cut(s) 10, 60, 165, 388
LmnI GCTCC 3 cut(s) 23, 182, 354
Lsp1109I GCAGC 3 cut(s) 199, 354, 372
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 469
MaeIII GTNAC 2 cut(s) 181, 190
MalI GATC 4 cut(s) 12, 62, 167, 390
MboI GATC 4 cut(s) 10, 60, 165, 388
MboII GAAGA 2 cut(s) 250, 310
MhlI GDGCHC 2 cut(s) 179, 258
MnlI CCTC 6 cut(s) 110, 115, 301, 310, 366, 427
MseI TTAA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 367
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 4 cut(s) 10, 60, 165, 388
NlaIV GGNNCC 2 cut(s) 126, 438
NmuCI GTSAC 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 371
PauI GCGCGC 1 cut(s) 345
PkrI GCNGC 4 cut(s) 214, 362, 369, 422
PpuMI RGGWCCY 1 cut(s) 436
Psp124BI GAGCTC 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 126, 438
PspPI GGNCC 3 cut(s) 125, 410, 436
PspPPI RGGWCCY 1 cut(s) 436
PteI GCGCGC 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 367
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 4 cut(s) 213, 361, 368, 421
Sau3AI GATC 4 cut(s) 10, 60, 165, 388
Sau96I GGNCC 3 cut(s) 125, 410, 436
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 2 cut(s) 179, 258
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 2 cut(s) 393, 424
Sfr274I CTCGAG 1 cut(s) 371
SinI GGWCC 2 cut(s) 125, 436
SlaI CTCGAG 1 cut(s) 371
SmlI CTYRAG 3 cut(s) 314, 371, 450
SmoI CTYRAG 3 cut(s) 314, 371, 450
SsiI CCGC 1 cut(s) 421
SspMI CTAG 1 cut(s) 469
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 3 cut(s) 9, 252, 372
TauI GCSGC 1 cut(s) 423
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 3 cut(s) 77, 274, 463
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 3 cut(s) 212, 360, 367
Tsp45I GTSAC 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 3 cut(s) 77, 274, 463
VpaK11BI GGWCC 2 cut(s) 125, 436
XhoI CTCGAG 1 cut(s) 371
XspI CTAG 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.