Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007091

Physical Location & Seq

Genomic Coordinates Reverse (-)

26708499 .. 26709499

Gene Structure 1001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATCAACACGCAGAAACTGTCCACTACTACAAAAAGTTAATCTCACAGAGAGGAGAGGGACCAACCTTGGTGAAATGTGAAACATACAGGTTTAGAGGACACTCATTGGCTGATCCCGATGAGCTCCGTGACCCTGCTGAGAAGGCACACTATGCTGCCAGAGACCCCATCACAGCCTTGAAGAAATACATATTCGAGCACAACTTAGCCAGTGAACACGAGCAGAAGGCCATAGATAAGAAGAGAGATGAGGTGCTTGAGGATGCCGTTGAGTTCGCCTATGAGAGGCCGCTCCCACCTCGCAGCCAGCTGCTCGAGAATGTGTTTGCCGATCCTATAGGCTTTGGAATAGGACCTGATGGCCGCTACAGATGTGAGGACCCTTTACTCAGGGCACTGCCGAAGTCTAGTCTTTGTTGGACCTATAGCAGTCAACTTGTGCTATATCTCTGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04922 ko05230 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200 map04066 map04922 map05230

Pfam Domains

Protein Families

E1_dh

Protein Analysis

153

Amino Acids

17.6

Weight (kDa)

5.87

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1_dh	PF00676	17 - 100	4.2e-15	Dehydrogenase E1 component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01090
fragaria_vesca	FvH4_7g17660
malus_domestica	MD07G1159600.v1.1
prunus_persica	Prupe.2G197700_v2.0.a1
pyrus_communis	pycom01g11280 pycom01g11290 pycom07g15610
rosa_chinensis	RchiOBHm_Chr1g0334521 RchiOBHm_Chr1g0361101
rosa_laevigata	RLG00000027748 RLG00000029447
rosa_multiflora	Rmu_sc0003333.1_g000006 Rmu_sc0034406.1_g000004 Rmu_ssc0000404.1_g000009
rosa_roxburghii	Rroxscaffold_4G00295430 Rroxscaffold_4G00316780
rosa_rugosa	Rorug01G0285600
rosa_samantha	Rh1AG296900 Rh1BG261200 Rh1CG278500 Rh1DG143600 Rh1DG291200
rosa_wichuraiana	Rw0G002890 Rw1G011520 Rw1G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	295
AciI	CCGC	2 cut(s)	293, 367
AclWI	GGATC	3 cut(s)	12, 110, 329
AcoI	YGGCCR	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	2 cut(s)	127, 313
AluI	AGCT	2 cut(s)	127, 313
Alw21I	GWGCWC	2 cut(s)	129, 204
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	3 cut(s)	12, 110, 329
AlwNI	CAGNNNCTG	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	231, 290, 364
ApeKI	GCWGC	3 cut(s)	158, 306, 313
AspS9I	GGNCC	4 cut(s)	62, 356, 382, 423
AsuHPI	GGTGA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	4 cut(s)	62, 356, 382, 423
BaeGI	GKGCMC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	221
Bbv12I	GWGCWC	2 cut(s)	129, 204
BbvI	GCAGC	3 cut(s)	145, 300, 318
BccI	CCATC	2 cut(s)	179, 356
BceAI	ACGGC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	411, 460
BfmI	CTRYAG	3 cut(s)	339, 370, 427
BisI	GCNGC	5 cut(s)	159, 293, 307, 314, 367
BlsI	GCNGC	5 cut(s)	160, 294, 308, 315, 368
Bme18I	GGWCC	4 cut(s)	62, 356, 382, 423
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	4 cut(s)	62, 356, 382, 423
BmiI	GGNNCC	2 cut(s)	63, 384
BmsI	GCATC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	132, 406
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	145, 300, 318
BshFI	GGCC	3 cut(s)	233, 292, 366
BsiHKAI	GWGCWC	2 cut(s)	129, 204
BsiHKCI	CYCGRG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	3 cut(s)	233, 292, 366
Bso31I	GGTCTC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	3 cut(s)	129, 204, 400
Bsp143I	GATC	3 cut(s)	4, 115, 334
BspACI	CCGC	2 cut(s)	293, 367
BspANI	GGCC	3 cut(s)	233, 292, 366
BspCNI	CTCAG	2 cut(s)	133, 405
BspLI	GGNNCC	2 cut(s)	63, 384
BspPI	GGATC	3 cut(s)	12, 110, 329
BspTNI	GGTCTC	1 cut(s)	159
BsrBI	CCGCTC	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	4, 115, 334
BssSI	CACGAG	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	3 cut(s)	141, 208, 392
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	3 cut(s)	7, 118, 337
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	3 cut(s)	4, 115, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 155
BstSFI	CTRYAG	3 cut(s)	339, 370, 427
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	145, 300, 318
BsuRI	GGCC	3 cut(s)	233, 292, 366
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	2 cut(s)	220, 398
Cac8I	GCNNGC	1 cut(s)	311
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	4 cut(s)	62, 356, 382, 423
DdeI	CTNAG	3 cut(s)	141, 208, 392
DpnI	GATC	3 cut(s)	6, 117, 336
DpnII	GATC	3 cut(s)	4, 115, 334
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	4 cut(s)	62, 356, 382, 423
Eco53kI	GAGCTC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	127
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EcoO109I	RGGNCCY	2 cut(s)	356, 382
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	69
FaiI	YATR	8 cut(s)	88, 156, 194, 236, 285, 341, 429, 448
FaqI	GGGAC	1 cut(s)	75
Fnu4HI	GCNGC	5 cut(s)	159, 293, 307, 314, 367
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	5 cut(s)	159, 293, 307, 314, 367
FspBI	CTAG	2 cut(s)	411, 460
GluI	GCNGC	5 cut(s)	159, 293, 307, 314, 367
HaeIII	GGCC	3 cut(s)	233, 292, 366
HincII	GTYRAC	1 cut(s)	437
HindII	GTYRAC	1 cut(s)	437
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	3 cut(s)	25, 218, 437
Hpy188III	TCNNGA	2 cut(s)	119, 319
Hpy8I	GTNNAC	3 cut(s)	25, 218, 437
HpyAV	CCTTC	2 cut(s)	139, 223
HpyCH4III	ACNGT	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 155
HpyF3I	CTNAG	3 cut(s)	141, 208, 392
Kzo9I	GATC	3 cut(s)	4, 115, 334
LmnI	GCTCC	2 cut(s)	132, 300
LpnPI	CCDG	7 cut(s)	76, 150, 175, 226, 323, 372, 379
Lsp1109I	GCAGC	3 cut(s)	145, 300, 318
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	411, 460
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	6, 117, 336
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	3 cut(s)	4, 115, 334
MboII	GAAGA	2 cut(s)	196, 256
MhlI	GDGCHC	3 cut(s)	129, 204, 400
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	8 cut(s)	47, 52, 92, 247, 256, 282, 312, 373
MseI	TTAA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	146, 155
NdeII	GATC	3 cut(s)	4, 115, 334
NlaIV	GGNNCC	2 cut(s)	63, 384
NmuCI	GTSAC	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	317
PkrI	GCNGC	5 cut(s)	160, 294, 308, 315, 368
PpuMI	RGGWCCY	2 cut(s)	356, 382
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	2 cut(s)	356, 382
PspN4I	GGNNCC	2 cut(s)	63, 384
PspPI	GGNCC	4 cut(s)	62, 356, 382, 423
PspPPI	RGGWCCY	2 cut(s)	356, 382
PstNI	CAGNNNCTG	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	313
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	5 cut(s)	159, 293, 307, 314, 367
Sau3AI	GATC	3 cut(s)	4, 115, 334
Sau96I	GGNCC	4 cut(s)	62, 356, 382, 423
SduI	GDGCHC	3 cut(s)	129, 204, 400
SetI	ASST	8 cut(s)	71, 95, 129, 258, 304, 315, 361, 428
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	3 cut(s)	339, 370, 427
Sfr274I	CTCGAG	1 cut(s)	317
SinI	GGWCC	4 cut(s)	62, 356, 382, 423
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	260, 317
SmoI	CTYRAG	2 cut(s)	260, 317
SsiI	CCGC	2 cut(s)	293, 367
SspMI	CTAG	2 cut(s)	411, 460
SstI	GAGCTC	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	198, 318
TauI	GCSGC	2 cut(s)	295, 369
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	2 cut(s)	220, 405
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	3 cut(s)	158, 306, 313
Tsp45I	GTSAC	1 cut(s)	131
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	220, 405
VpaK11BI	GGWCC	4 cut(s)	62, 356, 382, 423
XagI	CCTNNNNNAGG	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	317
XspI	CTAG	2 cut(s)	411, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.