Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Reverse (-)

49909 .. 51210

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCGACAGTTGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGTATCGCTATCACGGCTGACAAAATCGCGACCTTGGTGAAAGCTGCTGGTGTTAGTATTGAGTCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATCATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCTCCGGTTGCAGCTGCTGCTCCAGCTGCTGGCGGTGGTGCGGCAGCTGCTCCTGCTGCTGAGGAGAAGAAGAAGGATGAGCCAGCAGAAGAGAGTGACGGAGATTTGGGTTTCGGTTTGTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

112

Amino Acids

11.16

Weight (kDa)

4.3

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	23 - 111	2e-27	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	243, 251
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	239
AluBI	AGCT	6 cut(s)	19, 30, 101, 224, 236, 257
AluI	AGCT	6 cut(s)	19, 30, 101, 224, 236, 257
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	2 cut(s)	227, 239
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	9 cut(s)	27, 101, 221, 224, 227, 236, 254, 257, 266
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	47
BaeI	ACNNNNGTAYC	2 cut(s)	43, 76
BalI	TGGCCA	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	9 cut(s)	39, 88, 211, 214, 223, 233, 244, 253, 266
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	2 cut(s)	144, 261
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	9 cut(s)	39, 88, 211, 214, 223, 233, 244, 253, 266
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	42, 172
Bsp68I	TCGCGA	1 cut(s)	86
BspACI	CCGC	2 cut(s)	243, 251
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	145, 262
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	180
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	42, 172
BssT1I	CCWWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	4 cut(s)	21, 25, 241, 294
BstDEI	CTNAG	2 cut(s)	153, 270
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	45, 175
BstMBI	GATC	2 cut(s)	42, 172
BstMWI	GCNNNNNNNGC	9 cut(s)	71, 149, 218, 227, 233, 236, 257, 263, 266
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	9 cut(s)	39, 88, 211, 214, 223, 233, 244, 253, 266
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	292
BtuMI	TCGCGA	1 cut(s)	86
Cac8I	GCNNGC	4 cut(s)	21, 25, 241, 294
CaiI	CAGNNNCTG	2 cut(s)	227, 239
CciI	TCATGA	1 cut(s)	180
CviAII	CATG	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	153, 270
DpnI	GATC	2 cut(s)	44, 174
DpnII	GATC	2 cut(s)	42, 172
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	1 cut(s)	184
FaiI	YATR	3 cut(s)	41, 124, 182
FatI	CATG	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	1 cut(s)	184
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	2 cut(s)	85, 181
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	3 cut(s)	160, 165, 186
HpyCH4V	TGCA	2 cut(s)	27, 221
HpyF10VI	GCNNNNNNNGC	9 cut(s)	71, 149, 218, 227, 233, 236, 257, 263, 266
HpyF3I	CTNAG	2 cut(s)	153, 270
HpySE526I	ACGT	3 cut(s)	160, 165, 186
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	42, 172
LmnI	GCTCC	3 cut(s)	217, 235, 265
LpnPI	CCDG	8 cut(s)	90, 112, 180, 225, 228, 246, 276, 306
Lsp1109I	GCAGC	9 cut(s)	39, 88, 211, 214, 223, 233, 244, 253, 266
MaeII	ACGT	3 cut(s)	160, 165, 186
MaeIII	GTNAC	3 cut(s)	161, 166, 305
MalI	GATC	2 cut(s)	44, 174
MboI	GATC	2 cut(s)	42, 172
MboII	GAAGA	3 cut(s)	289, 292, 311
MhlI	GDGCHC	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	130
MluNI	TGGCCA	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	5 cut(s)	43, 49, 56, 197, 265
Mox20I	TGGCCA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	130
Msp20I	TGGCCA	1 cut(s)	130
MspA1I	CMGCKG	3 cut(s)	224, 236, 257
MspI	CCGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	9 cut(s)	71, 149, 218, 227, 233, 236, 257, 263, 266
NdeII	GATC	2 cut(s)	42, 172
NlaIII	CATG	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	166, 305
NruI	TCGCGA	1 cut(s)	86
PaeR7I	CTCGAG	1 cut(s)	47
PagI	TCATGA	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	239
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp1406I	AACGTT	1 cut(s)	186
PspXI	VCTCGAGB	1 cut(s)	47
PstNI	CAGNNNCTG	2 cut(s)	227, 239
PvuII	CAGCTG	3 cut(s)	224, 236, 257
RruI	TCGCGA	1 cut(s)	86
SalI	GTCGAC	1 cut(s)	4
Sau3AI	GATC	2 cut(s)	42, 172
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	214
Sfr274I	CTCGAG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	2 cut(s)	243, 251
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	3 cut(s)	163, 168, 189
TaqI	TCGA	2 cut(s)	5, 48
TauI	GCSGC	1 cut(s)	254
TseFI	GTSAC	2 cut(s)	166, 305
TseI	GCWGC	9 cut(s)	27, 101, 221, 224, 227, 236, 254, 257, 266
Tsp45I	GTSAC	2 cut(s)	166, 305
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.