Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Forward (+)

53263261 .. 53267528

Gene Structure 4268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAAAGTGGTTGTGGGCTCGGAGCTTGGGCCCATTGGATCTGACGTTGCAGGTGATGGACTGGTGGGGCCTGATGGTCCTCAATGCAAACGATGTCGTTTTCATCTACATCAAAGCATATTAACCACTTTTGGTTTTGTCGGTCCACATTCTTCAAATGGGCTTCAGAGATATGAGGGAGCCCATTTAAGCGCCTTTAAAAACCTAGACCTCGCTAGAAAATCAGAAACCCTAAAGCACAGCCATTGTGGTGTTGCAGCAGCCGCAGAGCACTCTCAAGCACAATCACTCTCAGATCTCATCTTCCTCAGAGCCATGTCGATTTCAGAGATTGCTTGCACTTACGCCGCTTTGATCCTCCACGACGATGGCATCCCCATCACTGCTGAGAAGATTGCCGCTTTGGTCAAAGCTGCCAATGTCTCTGTGGAGTCCTACTGGCCTGGTTTGTTTGCCAAGCTTGCTGAGAAGAGAGACATCGGTGACCTCATCTTGAATGTTGGTGCCGGAGGCGGTGGCGGTGCTGTTGCCGTTGCTGCCCCAGGTGCAGGCGCCGCCGCCCCTGCTGCAGCTGCTCCAGTGGAAGAGAAGAAGGAGGAGCCAAAGGAAGAGAGTGATGAAGATATGGGATTCAGCTTGTTCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

215

Amino Acids

22.23

Weight (kDa)

5.33

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	127 - 214	1.4e-26	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	41
Acc36I	ACCTGC	1 cut(s)	41
AccB1I	GGYRCC	2 cut(s)	503, 551
AciI	CCGC	7 cut(s)	264, 348, 399, 513, 519, 555, 558
AclWI	GGATC	2 cut(s)	46, 349
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	552
AfiI	CCNNNNNNNGG	1 cut(s)	548
AgsI	TTSAA	2 cut(s)	156, 496
AjnI	CCWGG	2 cut(s)	442, 541
AluBI	AGCT	5 cut(s)	25, 413, 460, 572, 636
AluI	AGCT	5 cut(s)	25, 413, 460, 572, 636
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	427, 468
AlwI	GGATC	2 cut(s)	46, 349
AoxI	GGCC	3 cut(s)	29, 68, 440
ApaI	GGGCCC	1 cut(s)	33
ApeKI	GCWGC	7 cut(s)	257, 260, 413, 536, 566, 569, 572
AspLEI	GCGC	2 cut(s)	194, 554
AspS9I	GGNCC	5 cut(s)	29, 30, 68, 77, 143
AsuHPI	GGTGA	2 cut(s)	65, 494
AvaII	GGWCC	2 cut(s)	77, 143
BaeGI	GKGCMC	1 cut(s)	33
BanI	GGYRCC	2 cut(s)	503, 551
BanII	GRGCYC	3 cut(s)	20, 33, 184
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	7 cut(s)	269, 272, 400, 523, 553, 559, 581
BccI	CCATC	4 cut(s)	50, 68, 362, 386
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	2 cut(s)	444, 543
BcoDI	GTCTC	2 cut(s)	427, 468
BfaI	CTAG	3 cut(s)	206, 216, 646
BfmI	CTRYAG	1 cut(s)	567
BfoI	RGCGCY	2 cut(s)	195, 555
BfuAI	ACCTGC	1 cut(s)	41
BglII	AGATCT	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	444, 543
Bme18I	GGWCC	2 cut(s)	77, 143
BmgT120I	GGNCC	5 cut(s)	29, 30, 68, 77, 143
BmiI	GGNNCC	6 cut(s)	31, 69, 181, 505, 553, 600
BmrFI	CCNGG	2 cut(s)	444, 543
BmsI	GCATC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse1I	ACTGG	3 cut(s)	66, 443, 578
BseBI	CCWGG	2 cut(s)	444, 543
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMII	CTCAG	4 cut(s)	306, 322, 378, 456
BseNI	ACTGG	3 cut(s)	66, 443, 578
BseRI	GAGGAG	1 cut(s)	611
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	7 cut(s)	269, 272, 400, 523, 553, 559, 581
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	3 cut(s)	31, 70, 442
BshNI	GGYRCC	2 cut(s)	503, 551
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	507
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	2 cut(s)	427, 468
BsnI	GGCC	3 cut(s)	31, 70, 442
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	4 cut(s)	20, 33, 184, 273
Bsp143I	GATC	3 cut(s)	38, 295, 354
BspACI	CCGC	7 cut(s)	264, 348, 399, 513, 519, 555, 558
BspANI	GGCC	3 cut(s)	31, 70, 442
BspCNI	CTCAG	4 cut(s)	305, 321, 379, 457
BspLI	GGNNCC	6 cut(s)	31, 69, 181, 505, 553, 600
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	41
BspPI	GGATC	2 cut(s)	46, 349
BspT107I	GGYRCC	2 cut(s)	503, 551
BsrI	ACTGG	3 cut(s)	66, 443, 578
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	3 cut(s)	38, 295, 354
BssNI	GRCGYC	1 cut(s)	552
Bst2UI	CCWGG	2 cut(s)	444, 543
Bst6I	CTCTTC	3 cut(s)	464, 579, 603
BstACI	GRCGYC	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	337, 462, 550
BstDEI	CTNAG	4 cut(s)	292, 308, 387, 465
BstEII	GGTNACC	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	372
BstH2I	RGCGCY	2 cut(s)	195, 555
BstHHI	GCGC	2 cut(s)	194, 554
BstKTI	GATC	3 cut(s)	41, 298, 357
BstMAI	GTCTC	2 cut(s)	427, 468
BstMBI	GATC	3 cut(s)	38, 295, 354
BstMWI	GCNNNNNNNGC	8 cut(s)	263, 461, 536, 545, 554, 563, 566, 572
BstNI	CCWGG	2 cut(s)	444, 543
BstPI	GGTNACC	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	442, 541
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	33
BstV1I	GCAGC	7 cut(s)	269, 272, 400, 523, 553, 559, 581
BstX2I	RGATCY	2 cut(s)	38, 295
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	2 cut(s)	38, 295
BsuRI	GGCC	3 cut(s)	31, 70, 442
BtsCI	GGATG	1 cut(s)	372
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	381, 585
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	337, 462, 550
CfoI	GCGC	2 cut(s)	194, 554
Cfr13I	GGNCC	5 cut(s)	29, 30, 68, 77, 143
CviAII	CATG	1 cut(s)	316
DdeI	CTNAG	4 cut(s)	292, 308, 387, 465
DinI	GGCGCC	1 cut(s)	553
DpnI	GATC	3 cut(s)	40, 297, 356
DpnII	GATC	3 cut(s)	38, 295, 354
DraI	TTTAAA	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	464, 579, 603
EarI	CTCTTC	3 cut(s)	464, 579, 603
Eco24I	GRGCYC	3 cut(s)	20, 33, 184
Eco47I	GGWCC	2 cut(s)	77, 143
Eco57I	CTGAAG	1 cut(s)	149
Eco91I	GGTNACC	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	68
EcoO65I	GGTNACC	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	442, 541
EcoT38I	GRGCYC	3 cut(s)	20, 33, 184
EgeI	GGCGCC	1 cut(s)	553
EheI	GGCGCC	1 cut(s)	553
FaeI	CATG	1 cut(s)	319
FaiI	YATR	4 cut(s)	119, 174, 317, 626
FatI	CATG	1 cut(s)	315
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	3 cut(s)	20, 33, 184
FspBI	CTAG	3 cut(s)	206, 216, 646
GlaI	GCGC	2 cut(s)	193, 553
GsuI	CTGGAG	1 cut(s)	561
HaeII	RGCGCY	2 cut(s)	195, 555
HaeIII	GGCC	3 cut(s)	31, 70, 442
HapII	CCGG	1 cut(s)	507
HhaI	GCGC	2 cut(s)	194, 554
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	2 cut(s)	192, 552
HinP1I	GCGC	2 cut(s)	192, 552
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	431, 630
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	2 cut(s)	65, 494
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	7 cut(s)	22, 43, 168, 226, 295, 311, 328
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	1 cut(s)	146
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	1 cut(s)	586
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	6 cut(s)	50, 87, 257, 339, 548, 569
HpyF10VI	GCNNNNNNNGC	8 cut(s)	263, 461, 536, 545, 554, 563, 566, 572
HpyF3I	CTNAG	4 cut(s)	292, 308, 387, 465
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	2 cut(s)	192, 552
KasI	GGCGCC	1 cut(s)	551
Kzo9I	GATC	3 cut(s)	38, 295, 354
LmnI	GCTCC	4 cut(s)	22, 179, 580, 598
Lsp1109I	GCAGC	7 cut(s)	269, 272, 400, 523, 553, 559, 581
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	3 cut(s)	206, 216, 646
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	3 cut(s)	40, 297, 356
MboI	GATC	3 cut(s)	38, 295, 354
MboII	GAAGA	8 cut(s)	144, 295, 403, 481, 596, 601, 620, 632
MflI	RGATCY	2 cut(s)	38, 295
MhlI	GDGCHC	4 cut(s)	20, 33, 184, 273
Mly113I	GGCGCC	1 cut(s)	552
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	8 cut(s)	90, 169, 221, 317, 368, 497, 503, 589
MseI	TTAA	3 cut(s)	122, 188, 198
MslI	CAYNNNNRTG	2 cut(s)	249, 366
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	2 cut(s)	444, 543
MvaI	CCWGG	2 cut(s)	444, 543
MwoI	GCNNNNNNNGC	8 cut(s)	263, 461, 536, 545, 554, 563, 566, 572
NarI	GGCGCC	1 cut(s)	552
NdeII	GATC	3 cut(s)	38, 295, 354
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	6 cut(s)	31, 69, 181, 505, 553, 600
NmuCI	GTSAC	1 cut(s)	482
PaqCI	CACCTGC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	630
PleI	GAGTC	1 cut(s)	439
PluTI	GGCGCC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	439
Psp6I	CCWGG	2 cut(s)	442, 541
PspEI	GGTNACC	1 cut(s)	482
PspGI	CCWGG	2 cut(s)	442, 541
PspN4I	GGNNCC	6 cut(s)	31, 69, 181, 505, 553, 600
PspOMI	GGGCCC	1 cut(s)	29
PspPI	GGNCC	5 cut(s)	29, 30, 68, 77, 143
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	2 cut(s)	38, 295
PvuII	CAGCTG	1 cut(s)	572
RseI	CAYNNNNRTG	2 cut(s)	249, 366
SaqAI	TTAA	3 cut(s)	122, 188, 198
Sau3AI	GATC	3 cut(s)	38, 295, 354
Sau96I	GGNCC	5 cut(s)	29, 30, 68, 77, 143
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	444, 543
SduI	GDGCHC	4 cut(s)	20, 33, 184, 273
SfaNI	GCATC	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	567
SfoI	GGCGCC	1 cut(s)	553
SinI	GGWCC	2 cut(s)	77, 143
SmiMI	CAYNNNNRTG	2 cut(s)	249, 366
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SsiI	CCGC	7 cut(s)	264, 348, 399, 513, 519, 555, 558
SspDI	GGCGCC	1 cut(s)	551
SspMI	CTAG	3 cut(s)	206, 216, 646
StyD4I	CCNGG	2 cut(s)	442, 541
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	320, 642
TaqII	GACCGA	1 cut(s)	131
TauI	GCSGC	5 cut(s)	266, 350, 401, 557, 560
TfiI	GAWTC	1 cut(s)	630
Tru1I	TTAA	3 cut(s)	122, 188, 198
Tru9I	TTAA	3 cut(s)	122, 188, 198
TscAI	CASTG	2 cut(s)	388, 585
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	7 cut(s)	257, 260, 413, 536, 566, 569, 572
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	17, 92, 633
TspRI	CASTG	2 cut(s)	388, 585
VpaK11BI	GGWCC	2 cut(s)	77, 143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XspI	CTAG	3 cut(s)	206, 216, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.