Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Forward (+)

23309641 .. 23311169

Gene Structure 1529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1159200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCGATTTCAGAGATTGCTTGCACCTATGCCGCCCTAATCCTCCACGATGATGGCATCCCCATCACTGCTGAGAAGATTGCAACAGTGGTGAAAGCTGCTGATATCACTGTTGAGTCTTACTGGCCCGGCTTGTTCGCCAAGCTCGCCGAGAAGAGGAACATTGAAGACCTCATCCTGAATGTTGGCGCTGGTGGCGGCGGTGCTGCTGTAGCCGTTGCTGCTTCAGGTGCCAGTGGGGCTGCCCCAGCTGCCGCTGCTCCTGCAGTAGAGGAGAAGAAGGAAGAGCCCAAGGAGGAGAGTGATGACGATATGGGATTCAGCTTGTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

112

Amino Acids

11.31

Weight (kDa)

4.29

Isoelectric Point (pI)

60.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 110	2.8e-27	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	4 cut(s)	33, 198, 201, 255
AcuI	CTGAAG	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	4 cut(s)	98, 145, 251, 324
AluI	AGCT	4 cut(s)	98, 145, 251, 324
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	6 cut(s)	98, 206, 221, 242, 251, 257
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	6 cut(s)	85, 193, 208, 229, 238, 244
BccI	CCATC	2 cut(s)	47, 71
BceAI	ACGGC	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	129
BfmI	CTRYAG	2 cut(s)	210, 264
BfoI	RGCGCY	1 cut(s)	192
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	9 cut(s)	33, 99, 199, 207, 222, 243, 252, 255, 258
BlsI	GCNGC	9 cut(s)	34, 100, 200, 208, 223, 244, 253, 256, 259
Bme1390I	CCNGG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	2 cut(s)	128, 234
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	57, 174
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	128, 234
BseRI	GAGGAG	2 cut(s)	287, 311
BseXI	GCAGC	6 cut(s)	85, 193, 208, 229, 238, 244
BseYI	CCCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	156
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	291
BspACI	CCGC	4 cut(s)	33, 198, 201, 255
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	268
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	128, 234
BssECI	CCNNGG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	88, 112
Bst6I	CTCTTC	2 cut(s)	149, 279
BstC8I	GCNNGC	2 cut(s)	22, 147
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	57, 174
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	2 cut(s)	210, 264
BstV1I	GCAGC	6 cut(s)	85, 193, 208, 229, 238, 244
BstV2I	GAAGAC	1 cut(s)	174
BstXI	CCANNNNNNTGG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	57, 174
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	4 cut(s)	66, 93, 108, 241
Cac8I	GCNNGC	2 cut(s)	22, 147
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	126
CviJI	RGCY	9 cut(s)	98, 127, 132, 145, 215, 242, 251, 289, 324
CviKI_1	RGCY	9 cut(s)	98, 127, 132, 145, 215, 242, 251, 289, 324
DdeI	CTNAG	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	149, 279
EarI	CTCTTC	2 cut(s)	149, 279
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaiI	YATR	2 cut(s)	30, 314
Fnu4HI	GCNGC	9 cut(s)	33, 99, 199, 207, 222, 243, 252, 255, 258
FokI	GGATG	2 cut(s)	44, 161
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	9 cut(s)	33, 99, 199, 207, 222, 243, 252, 255, 258
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	9 cut(s)	33, 99, 199, 207, 222, 243, 252, 255, 258
GsaI	CCCAGC	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	116, 318
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	88, 112
HpyCH4V	TGCA	3 cut(s)	24, 83, 266
HpyF3I	CTNAG	1 cut(s)	72
HspAI	GCGC	1 cut(s)	189
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	8 cut(s)	109, 142, 177, 191, 213, 247, 261, 276
Lsp1109I	GCAGC	6 cut(s)	85, 193, 208, 229, 238, 244
LweI	GCATC	1 cut(s)	66
MboII	GAAGA	5 cut(s)	88, 166, 179, 289, 296
MhlI	GDGCHC	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	5 cut(s)	53, 150, 182, 265, 289
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	2 cut(s)	251, 257
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	129
NciI	CCSGG	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	9 cut(s)	34, 100, 200, 208, 223, 244, 253, 256, 259
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	126
PstI	CTGCAG	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	279
SatI	GCNGC	9 cut(s)	33, 99, 199, 207, 222, 243, 252, 255, 258
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	7 cut(s)	29, 100, 147, 174, 232, 253, 326
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	2 cut(s)	210, 264
SmiMI	CAYNNNNRTG	1 cut(s)	51
SsiI	CCGC	4 cut(s)	33, 198, 201, 255
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	88, 112
TaqI	TCGA	2 cut(s)	5, 330
TauI	GCSGC	3 cut(s)	35, 201, 257
TfiI	GAWTC	1 cut(s)	318
TscAI	CASTG	4 cut(s)	73, 93, 115, 241
TseI	GCWGC	6 cut(s)	98, 206, 221, 242, 251, 257
TspRI	CASTG	4 cut(s)	73, 93, 115, 241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.