Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Forward (+)

20481637 .. 20481975

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g17290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGATGTCGGCTTCAGAGCTTGCTTGCACCTACGCCACTCTGATCCTCCATGATGAAGGCATCCCCGTCACTGCCGAGAAGATTGCAACCTTGGTGAAAGCCGCTAACGTCCCTGTCGAGTCTTACTGGCCCAGCCTCTTCGCCAAACTTGCCGAGAAGAGAAACGTTGAAGATCTTGTCCTGAATGCTGGCTCTGGCGGTGCAGTTTCTGTCGCTGCCCCAGGTGTCGCCGAAGATGCCGCCCCTGCTGCTGCTCCTCCACCAGAGGATAAGAAGAAGAAGGAAGAACCCGAGGAAGAGAGTGACGACGACTGTCCAATTTTCGATTTGTTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

113

Amino Acids

11.79

Weight (kDa)

4.27

Isoelectric Point (pI)

67.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	23 - 111	3.1e-23	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	102, 198, 240
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	3 cut(s)	215, 248, 251
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	202, 235, 238
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	222
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	5 cut(s)	102, 216, 240, 249, 252
BlsI	GCNGC	5 cut(s)	103, 217, 241, 250, 253
Bme1390I	CCNGG	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	69, 226
BoxI	GACNNNNGTC	1 cut(s)	312
BsaJI	CCNNGG	3 cut(s)	90, 220, 291
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	90, 220, 291
BseGI	GGATG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	202, 235, 238
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	42, 172
BspACI	CCGC	3 cut(s)	102, 198, 240
BspANI	GGCC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	90, 220, 291
BssMI	GATC	2 cut(s)	42, 172
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	3 cut(s)	143, 152, 291
BstC8I	GCNNGC	3 cut(s)	21, 25, 190
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	45, 175
BstMBI	GATC	2 cut(s)	42, 172
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 236, 245, 248
BstNI	CCWGG	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	202, 235, 238
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	60
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	3 cut(s)	21, 25, 190
CaiI	CAGNNNCTG	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	6 cut(s)	11, 19, 101, 130, 135, 192
CviKI_1	RGCY	6 cut(s)	11, 19, 101, 130, 135, 192
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	44, 174
DpnII	GATC	2 cut(s)	42, 172
Eam1104I	CTCTTC	3 cut(s)	143, 152, 291
EarI	CTCTTC	3 cut(s)	143, 152, 291
Eco130I	CCWWGG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	1 cut(s)	53
FaiI	YATR	1 cut(s)	51
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	5 cut(s)	102, 216, 240, 249, 252
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	5 cut(s)	102, 216, 240, 249, 252
GluI	GCNGC	5 cut(s)	102, 216, 240, 249, 252
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	16, 42
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	50, 274
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	2 cut(s)	108, 165
HpyCH4V	TGCA	3 cut(s)	27, 86, 203
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 236, 245, 248
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	2 cut(s)	108, 165
Hsp92II	CATG	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	42, 172
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	3 cut(s)	202, 235, 238
LweI	GCATC	2 cut(s)	69, 226
MaeII	ACGT	2 cut(s)	108, 165
MaeIII	GTNAC	2 cut(s)	67, 302
MalI	GATC	2 cut(s)	44, 174
MboI	GATC	2 cut(s)	42, 172
MboII	GAAGA	9 cut(s)	91, 130, 169, 182, 245, 286, 289, 296, 308
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	5 cut(s)	56, 146, 259, 267, 286
MspR9I	CCNGG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	4 cut(s)	149, 236, 245, 248
NdeII	GATC	2 cut(s)	42, 172
NlaIII	CATG	1 cut(s)	53
NmeAIII	GCCGAG	2 cut(s)	100, 178
NmuCI	GTSAC	2 cut(s)	67, 302
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	190
PkrI	GCNGC	5 cut(s)	103, 217, 241, 250, 253
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	312
Psp1406I	AACGTT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	172
SatI	GCNGC	5 cut(s)	102, 216, 240, 249, 252
Sau3AI	GATC	2 cut(s)	42, 172
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	6 cut(s)	21, 32, 92, 111, 168, 226
SfaNI	GCATC	2 cut(s)	69, 226
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	3 cut(s)	102, 198, 240
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	2 cut(s)	111, 168
TaqI	TCGA	2 cut(s)	117, 324
TasI	AATT	1 cut(s)	318
TauI	GCSGC	2 cut(s)	104, 242
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	67, 302
TseI	GCWGC	3 cut(s)	215, 248, 251
Tsp45I	GTSAC	2 cut(s)	67, 302
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.