Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Forward (+)

14910907 .. 14912235

Gene Structure 1329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCGATCTCAGAGATTGCTTGCACGTACGCCGCTCTGATCCTCCACGACGATGGCATCGCTATCACTCCTGAGAAGATCGCTGCTTTGGTCAAAGCTGCCAATGTCTCTGTGGAGTCCTACTGGCCTGGTTTGTTTGCCAAGCTTGCCGAGAAGAGAGACATTGGTGACCTCATCTTGAATGTTGGTGCCGGAGGTGGTGGCGGTGCTGTTGCCGTCGCCGCCCCAGGTGCTGGCGCTGGTGCGGCCCCTGCCGCAGCTGCTCCAGTTGAAGAGAAGAAGGAGGAGCCAAAGGAAGAGAGTGATGATGATATGGGATTCAGCTTGTTCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

112

Amino Acids

11.16

Weight (kDa)

4.33

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 110	3.5e-27	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	35
AciI	CCGC	5 cut(s)	33, 204, 222, 245, 255
AclWI	GGATC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	181, 272
AjnI	CCWGG	2 cut(s)	127, 226
AluBI	AGCT	4 cut(s)	98, 145, 260, 324
AluI	AGCT	4 cut(s)	98, 145, 260, 324
Alw26I	GTCTC	2 cut(s)	112, 153
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	125, 246
ApeKI	GCWGC	4 cut(s)	83, 98, 257, 260
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	188
BbvI	GCAGC	4 cut(s)	70, 85, 247, 269
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	129, 228
BcoDI	GTCTC	2 cut(s)	112, 153
BfaI	CTAG	1 cut(s)	334
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	8 cut(s)	33, 84, 99, 222, 246, 255, 258, 261
BlsI	GCNGC	8 cut(s)	34, 85, 100, 223, 247, 256, 259, 262
Bme1390I	CCNGG	2 cut(s)	129, 228
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	3 cut(s)	190, 249, 288
BmrFI	CCNGG	2 cut(s)	129, 228
BmsI	GCATC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	128, 266
BseBI	CCWGG	2 cut(s)	129, 228
BseDI	CCNNGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	24, 63
BseNI	ACTGG	2 cut(s)	128, 266
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	4 cut(s)	70, 85, 247, 269
BshFI	GGCC	2 cut(s)	127, 248
BshNI	GGYRCC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	192
BsiWI	CGTACG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	2 cut(s)	112, 153
BsnI	GGCC	2 cut(s)	127, 248
Bsp143I	GATC	3 cut(s)	6, 39, 78
BspACI	CCGC	5 cut(s)	33, 204, 222, 245, 255
BspANI	GGCC	2 cut(s)	127, 248
BspCNI	CTCAG	2 cut(s)	23, 64
BspLI	GGNNCC	3 cut(s)	190, 249, 288
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	128, 266
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	3 cut(s)	6, 39, 78
Bst2UI	CCWGG	2 cut(s)	129, 228
Bst6I	CTCTTC	3 cut(s)	149, 267, 291
BstBAI	YACGTR	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	22, 147, 235
BstDEI	CTNAG	2 cut(s)	10, 72
BstEII	GGTNACC	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	3 cut(s)	9, 42, 81
BstMAI	GTCTC	2 cut(s)	112, 153
BstMBI	GATC	3 cut(s)	6, 39, 78
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 221, 230, 245, 251, 254, 260
BstNI	CCWGG	2 cut(s)	129, 228
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	127, 226
BstV1I	GCAGC	4 cut(s)	70, 85, 247, 269
BstXI	CCANNNNNNTGG	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	127, 248
BtgZI	GCGATG	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	22, 147, 235
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	28
CviJI	RGCY	7 cut(s)	98, 127, 145, 248, 260, 289, 324
CviKI_1	RGCY	7 cut(s)	98, 127, 145, 248, 260, 289, 324
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	10, 72
DpnI	GATC	3 cut(s)	8, 41, 80
DpnII	GATC	3 cut(s)	6, 39, 78
Eam1104I	CTCTTC	3 cut(s)	149, 267, 291
EarI	CTCTTC	3 cut(s)	149, 267, 291
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	127, 226
FaiI	YATR	1 cut(s)	314
Fnu4HI	GCNGC	8 cut(s)	33, 84, 99, 222, 246, 255, 258, 261
Fsp4HI	GCNGC	8 cut(s)	33, 84, 99, 222, 246, 255, 258, 261
FspBI	CTAG	1 cut(s)	334
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	8 cut(s)	33, 84, 99, 222, 246, 255, 258, 261
GsuI	CTGGAG	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	127, 248
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	116, 318
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	2 cut(s)	13, 39
Hpy188III	TCNNGA	2 cut(s)	71, 178
Hpy99I	CGWCG	2 cut(s)	53, 221
HpyAV	CCTTC	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 221, 230, 245, 251, 254, 260
HpyF3I	CTNAG	2 cut(s)	10, 72
HpySE526I	ACGT	1 cut(s)	26
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	6, 39, 78
LmnI	GCTCC	2 cut(s)	268, 286
Lsp1109I	GCAGC	4 cut(s)	70, 85, 247, 269
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	334
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	3 cut(s)	8, 41, 80
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	3 cut(s)	6, 39, 78
MboII	GAAGA	5 cut(s)	88, 166, 284, 289, 308
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	53, 182, 188, 277
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	129, 228
MvaI	CCWGG	2 cut(s)	129, 228
MwoI	GCNNNNNNNGC	7 cut(s)	146, 221, 230, 245, 251, 254, 260
NdeII	GATC	3 cut(s)	6, 39, 78
NlaIV	GGNNCC	3 cut(s)	190, 249, 288
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	318
Pfl23II	CGTACG	1 cut(s)	27
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	8 cut(s)	34, 85, 100, 223, 247, 256, 259, 262
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	127, 226
PspEI	GGTNACC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	127, 226
PspLI	CGTACG	1 cut(s)	27
PspN4I	GGNNCC	3 cut(s)	190, 249, 288
PspPI	GGNCC	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	8 cut(s)	33, 84, 99, 222, 246, 255, 258, 261
Sau3AI	GATC	3 cut(s)	6, 39, 78
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	129, 228
SetI	ASST	8 cut(s)	29, 100, 147, 174, 199, 232, 262, 326
SfaNI	GCATC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	51
SsiI	CCGC	5 cut(s)	33, 204, 222, 245, 255
SspMI	CTAG	1 cut(s)	334
StyD4I	CCNGG	2 cut(s)	127, 226
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	5, 330
TauI	GCSGC	4 cut(s)	35, 224, 248, 257
TfiI	GAWTC	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	4 cut(s)	83, 98, 257, 260
Tsp45I	GTSAC	1 cut(s)	167
Van91I	CCANNNNNTGG	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XspI	CTAG	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.