Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Forward (+)

39963672 .. 39966424

Gene Structure 2753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0285100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGGGGAAAGAAGAGGATGTGAAGTTGGGTGCCAACAAGTTCTCAGAGAGGCAGCCCATAGGGACCTCAGCTCAGACAGACAAGGACTACAAGGAGCCACCACCAGCTCCACTGTTTGAGCCTGGGGAGCTCCAGTCATGGTCTTTTTGGAGAGCTGGAATAGCTGAGTTTGTGGCTACCTTCTTGTTCCTCTACATCACTATTTTGACTGTGATGGGGGTCAAAAGGGCACCAAACATGTGCTCTTCTGTGGGTATTCAGGGCATTGCTTGGGCCTTTGGGGGTACCATCTTTGCCCTTGTTTACTGCACTGCTGGAATCTCAGGTGGTCACATAAACCCAGCTGTGACATTCGGTCTCTTCTTGGCAAGGAAACTCTCCCTGACCAGAGCTGTGTTCTATATAGTGATGCAAACCCTTGGGGCAATTGCTGGTGCTGCTGTGGTCAAGGGGTTTGAGGGCAACACCCGGTATGAAGTGCTCGGTGGTGGAGCTAACTCCGTGAACCATGGCTATACCAAGGGTGATGGCCTTGGTGCTGAGATTGTTGGCACTTTTGTTCTGGTCTACACTGTTTTCTCTGCCACTGATGCCAAGAGAAATGCCAGAGACTCCCATGTCCCTATCTTGGCTCCACTTCCAATTGGGTTTGCAGTGTTCTTGGTGCACTTGGCAACCATCCCCATCACTGGAACTGGTATCAACCCTGCTAGGAGCCTTGGAGCTGCCATCATCTACGACAAGGAACATGCATGGGATCATCATTGGGTCTTCTGGGTTGGACCATTCATCGGAGCTGCACTTGCTGCCCTCTACCATCAGATAGTCATCAGAGCCATTCCATTCAAGACCAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

287

Amino Acids

30.86

Weight (kDa)

8.47

Isoelectric Point (pI)

26.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	44 - 274	1.1e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	3 cut(s)	32, 232, 287
AccI	GTMKAC	1 cut(s)	570
AclWI	GGATC	1 cut(s)	768
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	850
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	2 cut(s)	124, 854
Alw21I	GWGCWC	4 cut(s)	135, 248, 486, 672
Alw26I	GTCTC	2 cut(s)	365, 606
Alw44I	GTGCAC	1 cut(s)	668
AlwI	GGATC	1 cut(s)	768
AoxI	GGCC	2 cut(s)	276, 532
ApaLI	GTGCAC	1 cut(s)	668
ApeKI	GCWGC	5 cut(s)	55, 440, 728, 800, 809
Asp718I	GGTACC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	66, 276, 785
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	66, 785
BaeGI	GKGCMC	2 cut(s)	235, 672
BanI	GGYRCC	3 cut(s)	32, 232, 287
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	766
Bbv12I	GWGCWC	4 cut(s)	135, 248, 486, 672
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	5 cut(s)	67, 427, 715, 787, 796
BccI	CCATC	7 cut(s)	211, 299, 524, 689, 695, 740, 828
BciT130I	CCWGG	2 cut(s)	126, 856
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	365, 606
BfaI	CTAG	1 cut(s)	714
BisI	GCNGC	5 cut(s)	56, 441, 729, 801, 810
BlsI	GCNGC	5 cut(s)	57, 442, 730, 802, 811
Bme1390I	CCNGG	3 cut(s)	126, 472, 856
Bme18I	GGWCC	2 cut(s)	66, 785
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	3 cut(s)	66, 276, 785
BmiI	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
BmrFI	CCNGG	3 cut(s)	126, 472, 856
BmsI	GCATC	2 cut(s)	402, 583
BpiI	GAAGAC	1 cut(s)	766
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	7 cut(s)	125, 421, 511, 522, 535, 721, 855
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 692, 794
Bse1I	ACTGG	3 cut(s)	136, 697, 703
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	830
BseBI	CCWGG	2 cut(s)	126, 856
BseDI	CCNNGG	7 cut(s)	125, 421, 511, 522, 535, 721, 855
BseGI	GGATG	2 cut(s)	25, 681
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	6 cut(s)	60, 84, 89, 159, 339, 534
BseNI	ACTGG	3 cut(s)	136, 697, 703
BseSI	GKGCMC	2 cut(s)	235, 672
BseXI	GCAGC	5 cut(s)	67, 427, 715, 787, 796
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	2 cut(s)	295, 786
BshFI	GGCC	2 cut(s)	278, 534
BshNI	GGYRCC	3 cut(s)	32, 232, 287
BsiHKAI	GWGCWC	4 cut(s)	135, 248, 486, 672
BsiSI	CCGG	1 cut(s)	472
BslFI	GGGAC	2 cut(s)	79, 608
BslI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
BsmAI	GTCTC	2 cut(s)	365, 606
BsmFI	GGGAC	2 cut(s)	79, 608
BsnI	GGCC	2 cut(s)	278, 534
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	5 cut(s)	135, 235, 248, 486, 672
Bsp143I	GATC	1 cut(s)	760
Bsp19I	CCATGG	1 cut(s)	511
BspANI	GGCC	2 cut(s)	278, 534
BspCNI	CTCAG	6 cut(s)	59, 83, 88, 160, 338, 535
BspLI	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
BspPI	GGATC	1 cut(s)	768
BspQI	GCTCTTC	1 cut(s)	253
BspT107I	GGYRCC	3 cut(s)	32, 232, 287
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	136, 697, 703
BssECI	CCNNGG	7 cut(s)	125, 421, 511, 522, 535, 721, 855
BssMI	GATC	1 cut(s)	760
BssT1I	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
Bst2UI	CCWGG	2 cut(s)	126, 856
Bst4CI	ACNGT	3 cut(s)	117, 214, 577
Bst6I	CTCTTC	3 cut(s)	9, 253, 368
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstDEI	CTNAG	6 cut(s)	46, 70, 75, 168, 325, 543
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	2 cut(s)	25, 681
BstKTI	GATC	1 cut(s)	763
BstMAI	GTCTC	2 cut(s)	365, 606
BstMBI	GATC	1 cut(s)	760
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 164, 440, 593, 806, 809
BstNI	CCWGG	2 cut(s)	126, 856
BstNSI	RCATGY	2 cut(s)	244, 755
BstSCI	CCNGG	3 cut(s)	124, 470, 854
BstSLI	GKGCMC	2 cut(s)	235, 672
BstV1I	GCAGC	5 cut(s)	67, 427, 715, 787, 796
BstV2I	GAAGAC	1 cut(s)	766
BsuRI	GGCC	2 cut(s)	278, 534
BtgI	CCRYGG	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	25, 681
BtsI	GCAGTG	2 cut(s)	312, 663
BtsIMutI	CAGTG	6 cut(s)	113, 312, 573, 588, 663, 690
Cfr13I	GGNCC	3 cut(s)	66, 276, 785
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	6 cut(s)	141, 241, 512, 620, 752, 756
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	6 cut(s)	46, 70, 75, 168, 325, 543
DpnI	GATC	1 cut(s)	762
DpnII	GATC	1 cut(s)	760
DrdI	GACNNNNNNGTC	1 cut(s)	620
DriI	GACNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	620
Eam1104I	CTCTTC	3 cut(s)	9, 253, 368
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	3 cut(s)	9, 253, 368
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	66, 785
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	124, 854
EcoT14I	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
EcoT22I	ATGCAT	1 cut(s)	757
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
FaeI	CATG	6 cut(s)	144, 244, 515, 623, 755, 759
FaqI	GGGAC	2 cut(s)	79, 608
FatI	CATG	6 cut(s)	140, 240, 511, 619, 751, 755
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	5 cut(s)	56, 441, 729, 801, 810
FokI	GGATG	2 cut(s)	32, 668
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	5 cut(s)	56, 441, 729, 801, 810
FspBI	CTAG	1 cut(s)	714
GluI	GCNGC	5 cut(s)	56, 441, 729, 801, 810
GsaI	CCCAGC	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	278, 534
HapII	CCGG	1 cut(s)	472
Hin1II	CATG	6 cut(s)	144, 244, 515, 623, 755, 759
HinfI	GANTC	2 cut(s)	321, 614
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	4 cut(s)	307, 508, 571, 670
Hpy188I	TCNGA	5 cut(s)	49, 78, 797, 825, 836
Hpy188III	TCNNGA	1 cut(s)	850
Hpy8I	GTNNAC	4 cut(s)	307, 508, 571, 670
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	117, 214, 577
HpyCH4V	TGCA	6 cut(s)	312, 415, 656, 670, 755, 803
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 164, 440, 593, 806, 809
HpyF3I	CTNAG	6 cut(s)	46, 70, 75, 168, 325, 543
Hsp92II	CATG	6 cut(s)	144, 244, 515, 623, 755, 759
KpnI	GGTACC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	760
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	9 cut(s)	97, 115, 130, 138, 494, 640, 717, 725, 797
Lsp1109I	GCAGC	5 cut(s)	67, 427, 715, 787, 796
LweI	GCATC	2 cut(s)	402, 583
MaeI	CTAG	1 cut(s)	714
MaeIII	GTNAC	2 cut(s)	332, 349
MalI	GATC	1 cut(s)	762
MboI	GATC	1 cut(s)	760
MboII	GAAGA	4 cut(s)	26, 240, 355, 766
MfeI	CAATTG	2 cut(s)	429, 645
MhlI	GDGCHC	5 cut(s)	135, 235, 248, 486, 672
MluCI	AATT	2 cut(s)	429, 645
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	763
MnlI	CCTC	6 cut(s)	10, 45, 79, 203, 454, 824
Mph1103I	ATGCAT	1 cut(s)	757
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	3 cut(s)	126, 472, 856
MunI	CAATTG	2 cut(s)	429, 645
MvaI	CCWGG	2 cut(s)	126, 856
MwoI	GCNNNNNNNGC	6 cut(s)	130, 164, 440, 593, 806, 809
NciI	CCSGG	1 cut(s)	472
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	1 cut(s)	760
NlaIII	CATG	6 cut(s)	144, 244, 515, 623, 755, 759
NlaIV	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
NmuCI	GTSAC	2 cut(s)	332, 349
NsiI	ATGCAT	1 cut(s)	757
NspI	RCATGY	2 cut(s)	244, 755
PciI	ACATGT	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	57, 442, 730, 802, 811
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	66
PscI	ACATGT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	124, 854
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	2 cut(s)	124, 854
PspN4I	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
PspPI	GGNCC	3 cut(s)	66, 276, 785
PspPPI	RGGWCCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	253
SatI	GCNGC	5 cut(s)	56, 441, 729, 801, 810
Sau3AI	GATC	1 cut(s)	760
Sau96I	GGNCC	3 cut(s)	66, 276, 785
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	3 cut(s)	126, 472, 856
SduI	GDGCHC	5 cut(s)	135, 235, 248, 486, 672
SfaNI	GCATC	2 cut(s)	402, 583
SinI	GGWCC	2 cut(s)	66, 785
Sse9I	AATT	2 cut(s)	429, 645
SspMI	CTAG	1 cut(s)	714
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	124, 470, 854
StyI	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
TaaI	ACNGT	3 cut(s)	117, 214, 577
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	2 cut(s)	429, 645
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	6 cut(s)	120, 319, 580, 595, 663, 697
TseFI	GTSAC	2 cut(s)	332, 349
TseI	GCWGC	5 cut(s)	55, 440, 728, 800, 809
Tsp45I	GTSAC	2 cut(s)	332, 349
TspDTI	ATGAA	2 cut(s)	492, 781
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	6 cut(s)	120, 319, 580, 595, 663, 697
VneI	GTGCAC	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	66, 785
XceI	RCATGY	2 cut(s)	244, 755
XmiI	GTMKAC	1 cut(s)	570
XspI	CTAG	1 cut(s)	714
Zsp2I	ATGCAT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.