Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Reverse (-)

19327566 .. 19328986

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCGACAGTGGGAGAGCTCGCTTGCAGCTACGCTGTTATGATCCTCGAGGATGAGGGTATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTTACCATTGAGTCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAATGTCACTGATCTCATCATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCGCCTGTTGCAGCTGCTGCTCCTGCTGCTGGCGGTGGTGCTGCCGCTGCTGCTCCTGCTGCCGAGGAGAAGAAGAAGGACGAACCAGCAGAAGAGAGTGATGGAGATTTGGGTTTTGGCTTGTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

113

Amino Acids

11.25

Weight (kDa)

4.3

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	23 - 112	3.5e-28	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	243, 255
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	239
AleI	CACNNNNGTG	1 cut(s)	92
AluBI	AGCT	4 cut(s)	19, 30, 101, 224
AluI	AGCT	4 cut(s)	19, 30, 101, 224
Alw21I	GWGCWC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	2 cut(s)	142, 305
BceAI	ACGGC	1 cut(s)	87
BglI	GCCNNNNNGGC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	239
BsnI	GGCC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	42, 172
BspACI	CCGC	2 cut(s)	243, 255
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	180
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	42, 172
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	21, 25, 241
BstDEI	CTNAG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	2 cut(s)	45, 175
BstMBI	GATC	2 cut(s)	42, 172
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	15, 168
Cac8I	GCNNGC	3 cut(s)	21, 25, 241
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	214
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	8 cut(s)	19, 30, 74, 101, 130, 152, 224, 330
CviKI_1	RGCY	8 cut(s)	19, 30, 74, 101, 130, 152, 224, 330
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	2 cut(s)	44, 174
DpnII	GATC	2 cut(s)	42, 172
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	1 cut(s)	184
FaiI	YATR	3 cut(s)	41, 124, 182
FatI	CATG	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	21
GlaI	GCGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	1 cut(s)	184
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	2 cut(s)	160, 186
HpyCH4V	TGCA	2 cut(s)	27, 221
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	2 cut(s)	160, 186
Hsp92II	CATG	1 cut(s)	184
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	2 cut(s)	42, 172
LmnI	GCTCC	2 cut(s)	235, 268
LpnPI	CCDG	8 cut(s)	90, 112, 180, 225, 228, 246, 279, 309
MaeII	ACGT	2 cut(s)	160, 186
MaeIII	GTNAC	2 cut(s)	109, 166
MalI	GATC	2 cut(s)	44, 174
MboI	GATC	2 cut(s)	42, 172
MboII	GAAGA	3 cut(s)	292, 295, 314
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	130
MluNI	TGGCCA	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	5 cut(s)	43, 49, 56, 197, 268
Mox20I	TGGCCA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	130
MseI	TTAA	1 cut(s)	340
MslI	CAYNNNNRTG	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	130
MspA1I	CMGCKG	2 cut(s)	224, 257
NdeII	GATC	2 cut(s)	42, 172
NlaIII	CATG	1 cut(s)	184
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	92
PaeR7I	CTCGAG	1 cut(s)	47
PagI	TCATGA	1 cut(s)	180
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	21
Psp1406I	AACGTT	1 cut(s)	186
PspXI	VCTCGAGB	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	340
Sau3AI	GATC	2 cut(s)	42, 172
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	7 cut(s)	21, 32, 103, 163, 189, 208, 226
Sfr274I	CTCGAG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	2 cut(s)	243, 255
SstI	GAGCTC	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	2 cut(s)	163, 189
TaqI	TCGA	3 cut(s)	5, 48, 336
TauI	GCSGC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TscAI	CASTG	2 cut(s)	15, 175
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	15, 175
XhoI	CTCGAG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.