Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033549.1

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1351

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033549.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 353 bp

atctcatcttcctcagagccatgtcgatttcagagattgcttgcacttacgccgctttgatcctccacgacgatggcatccccatcactgctgagaagattgccgctttggtcaaagctgccaatgtctctatggagtcctactggcctggtttgtttgccaagcttgctgagaagagagacatcggtgacctcatcttgaatgttggtgccggaggcggtggcggtgctgttgccgttgctgccccaggtgcaggcgccgccgcccctgctgcagctgctccagtggaagagaagaaggaggagccaaaggaagagagtgatgaagatatgggattcagcttgttcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

116

Amino Acids

11.86

Weight (kDa)

4.45

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	208, 256
AciI	CCGC	6 cut(s)	53, 104, 218, 224, 260, 263
AclWI	GGATC	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	201
AjnI	CCWGG	2 cut(s)	147, 246
AluBI	AGCT	4 cut(s)	118, 165, 277, 341
AluI	AGCT	4 cut(s)	118, 165, 277, 341
Alw26I	GTCTC	2 cut(s)	132, 173
AlwI	GGATC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	5 cut(s)	118, 241, 271, 274, 277
AspLEI	GCGC	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	199
BanI	GGYRCC	2 cut(s)	208, 256
BbvI	GCAGC	5 cut(s)	105, 228, 258, 264, 286
BccI	CCATC	2 cut(s)	67, 91
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	149, 248
BcoDI	GTCTC	2 cut(s)	132, 173
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	260
BisI	GCNGC	9 cut(s)	53, 104, 119, 242, 260, 263, 272, 275, 278
BlsI	GCNGC	9 cut(s)	54, 105, 120, 243, 261, 264, 273, 276, 279
Bme1390I	CCNGG	2 cut(s)	149, 248
BmiI	GGNNCC	3 cut(s)	210, 258, 305
BmrFI	CCNGG	2 cut(s)	149, 248
BmsI	GCATC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	148, 283
BseBI	CCWGG	2 cut(s)	149, 248
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	3 cut(s)	27, 83, 161
BseNI	ACTGG	2 cut(s)	148, 283
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	5 cut(s)	105, 228, 258, 264, 286
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	2 cut(s)	208, 256
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	132, 173
BsnI	GGCC	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	59
BspACI	CCGC	6 cut(s)	53, 104, 218, 224, 260, 263
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	3 cut(s)	26, 84, 162
BspLI	GGNNCC	3 cut(s)	210, 258, 305
BspMAI	CTGCAG	1 cut(s)	276
BspPI	GGATC	1 cut(s)	54
BspT107I	GGYRCC	2 cut(s)	208, 256
BsrI	ACTGG	2 cut(s)	148, 283
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	59
BssNI	GRCGYC	1 cut(s)	257
Bst2UI	CCWGG	2 cut(s)	149, 248
Bst6I	CTCTTC	3 cut(s)	169, 284, 308
BstACI	GRCGYC	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	42, 167, 255
BstDEI	CTNAG	3 cut(s)	13, 92, 170
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	1 cut(s)	62
BstMAI	GTCTC	2 cut(s)	132, 173
BstMBI	GATC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	7 cut(s)	166, 241, 250, 259, 268, 271, 277
BstNI	CCWGG	2 cut(s)	149, 248
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	147, 246
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	5 cut(s)	105, 228, 258, 264, 286
BstXI	CCANNNNNNTGG	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	77
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	86, 290
Cac8I	GCNNGC	3 cut(s)	42, 167, 255
CfoI	GCGC	1 cut(s)	259
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	7 cut(s)	19, 118, 147, 165, 277, 306, 341
CviKI_1	RGCY	7 cut(s)	19, 118, 147, 165, 277, 306, 341
DdeI	CTNAG	3 cut(s)	13, 92, 170
DinI	GGCGCC	1 cut(s)	258
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
Eam1104I	CTCTTC	3 cut(s)	169, 284, 308
EarI	CTCTTC	3 cut(s)	169, 284, 308
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	147, 246
EgeI	GGCGCC	1 cut(s)	258
EheI	GGCGCC	1 cut(s)	258
FaeI	CATG	1 cut(s)	24
FaiI	YATR	3 cut(s)	22, 133, 331
FatI	CATG	1 cut(s)	20
Fnu4HI	GCNGC	9 cut(s)	53, 104, 119, 242, 260, 263, 272, 275, 278
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	9 cut(s)	53, 104, 119, 242, 260, 263, 272, 275, 278
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	9 cut(s)	53, 104, 119, 242, 260, 263, 272, 275, 278
GsuI	CTGGAG	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	257
Hin1II	CATG	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	2 cut(s)	136, 335
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	16, 33
Hpy188III	TCNNGA	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	291
HpyCH4V	TGCA	3 cut(s)	44, 253, 274
HpyF10VI	GCNNNNNNNGC	7 cut(s)	166, 241, 250, 259, 268, 271, 277
HpyF3I	CTNAG	3 cut(s)	13, 92, 170
Hsp92I	GRCGYC	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	24
HspAI	GCGC	1 cut(s)	257
KasI	GGCGCC	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	285, 303
LpnPI	CCDG	9 cut(s)	129, 134, 161, 225, 233, 239, 260, 281, 296
Lsp1109I	GCAGC	5 cut(s)	105, 228, 258, 264, 286
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	6 cut(s)	108, 186, 301, 306, 325, 337
Mly113I	GGCGCC	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	5 cut(s)	22, 73, 202, 208, 294
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	149, 248
MvaI	CCWGG	2 cut(s)	149, 248
MwoI	GCNNNNNNNGC	7 cut(s)	166, 241, 250, 259, 268, 271, 277
NarI	GGCGCC	1 cut(s)	257
NdeII	GATC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	24
NlaIV	GGNNCC	3 cut(s)	210, 258, 305
NmuCI	GTSAC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	9 cut(s)	54, 105, 120, 243, 261, 264, 273, 276, 279
PleI	GAGTC	1 cut(s)	144
PluTI	GGCGCC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	147, 246
PspEI	GGTNACC	1 cut(s)	187
PspGI	CCWGG	2 cut(s)	147, 246
PspN4I	GGNNCC	3 cut(s)	210, 258, 305
PstI	CTGCAG	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	9 cut(s)	53, 104, 119, 242, 260, 263, 272, 275, 278
Sau3AI	GATC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	149, 248
SetI	ASST	6 cut(s)	120, 167, 194, 252, 279, 343
SfaNI	GCATC	1 cut(s)	86
SfcI	CTRYAG	1 cut(s)	272
SfoI	GGCGCC	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	71
SsiI	CCGC	6 cut(s)	53, 104, 218, 224, 260, 263
SspDI	GGCGCC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	147, 246
TaqI	TCGA	2 cut(s)	25, 347
TauI	GCSGC	4 cut(s)	55, 106, 262, 265
TfiI	GAWTC	1 cut(s)	335
TscAI	CASTG	2 cut(s)	93, 290
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	5 cut(s)	118, 241, 271, 274, 277
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	2 cut(s)	93, 290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.