Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Reverse (-)

345911 .. 347293

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCGACAGTCGGAGAACTTGCTTGCAGCTACGCTGTTATGATCCTTGAAGACGAGGGCATTGCCATCACTTCTGATAAGATTGCGACTTTGGTCAAAGCGGCTGGTGTTGAGATTGAGTCTTACTGGCCAATGTTATTCGCCAAGATGGCTGAGAAGAGAAATGTCACAGACCTTATCATGAATGTTGGTGCTGGTGGTGGTGGAGGCGGTGCCCCAGTGTCTGCTGCCGCACCTGCTGCTGCTGGAGGAGCTGCTGCTGCTGCCCCTGCTAAGGAGGAGAAGAAGGACGAACCCGCAGAAGAGAGTGATGGAGATCTTGGTTTCGGCTTGTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

113

Amino Acids

11.31

Weight (kDa)

4.26

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	23 - 112	2.6e-27	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	4 cut(s)	101, 210, 231, 297
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	2 cut(s)	30, 254
AluI	AGCT	2 cut(s)	30, 254
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	8 cut(s)	27, 227, 239, 242, 254, 257, 260, 263
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	57
BbvI	GCAGC	8 cut(s)	39, 214, 226, 229, 241, 244, 247, 250
BccI	CCATC	3 cut(s)	74, 142, 305
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BfuAI	ACCTGC	1 cut(s)	244
BglI	GCCNNNNNGGC	1 cut(s)	149
BglII	AGATCT	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	214
BmrI	ACTGGG	1 cut(s)	212
BmuI	ACTGGG	1 cut(s)	212
BoxI	GACNNNNGTC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	131, 218
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	315
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	131, 218
BseRI	GAGGAG	2 cut(s)	264, 293
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	8 cut(s)	39, 214, 226, 229, 241, 244, 247, 250
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	274
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	42, 316
BspACI	CCGC	4 cut(s)	101, 210, 231, 297
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	131, 218
BssMI	GATC	2 cut(s)	42, 316
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	2 cut(s)	152, 297
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	153, 273
BstKTI	GATC	2 cut(s)	45, 319
BstMBI	GATC	2 cut(s)	42, 316
BstMWI	GCNNNNNNNGC	7 cut(s)	149, 236, 239, 251, 260, 263, 269
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	8 cut(s)	39, 214, 226, 229, 241, 244, 247, 250
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	224
CciI	TCATGA	1 cut(s)	180
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	6 cut(s)	30, 104, 130, 152, 254, 330
CviKI_1	RGCY	6 cut(s)	30, 104, 130, 152, 254, 330
DdeI	CTNAG	2 cut(s)	153, 273
DpnI	GATC	2 cut(s)	44, 318
DpnII	GATC	2 cut(s)	42, 316
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	2 cut(s)	152, 297
EarI	CTCTTC	2 cut(s)	152, 297
FaeI	CATG	1 cut(s)	184
FaiI	YATR	2 cut(s)	41, 182
FatI	CATG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	184
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	14, 76
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	7 cut(s)	149, 236, 239, 251, 260, 263, 269
HpyF3I	CTNAG	2 cut(s)	153, 273
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	42, 316
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	7 cut(s)	90, 112, 180, 231, 231, 249, 282
Lsp1109I	GCAGC	8 cut(s)	39, 214, 226, 229, 241, 244, 247, 250
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	44, 318
MboI	GATC	2 cut(s)	42, 316
MboII	GAAGA	4 cut(s)	62, 169, 295, 314
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	130
MluNI	TGGCCA	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	4 cut(s)	49, 200, 242, 271
Mox20I	TGGCCA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	130
Msp20I	TGGCCA	1 cut(s)	130
MwoI	GCNNNNNNNGC	7 cut(s)	149, 236, 239, 251, 260, 263, 269
NdeII	GATC	2 cut(s)	42, 316
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	180
PaqCI	CACCTGC	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshAI	GACNNNNGTC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	316
SalI	GTCGAC	1 cut(s)	4
Sau3AI	GATC	2 cut(s)	42, 316
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	4 cut(s)	32, 177, 238, 256
SsiI	CCGC	4 cut(s)	101, 210, 231, 297
TaaI	ACNGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	5, 336
TauI	GCSGC	2 cut(s)	104, 233
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	8 cut(s)	27, 227, 239, 242, 254, 257, 260, 263
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.