Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Forward (+)

20485444 .. 20485782

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g17300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCGGCTTCAGAGCTTGCTTGCAGTTACGCCATTCTAATCCTCCATGACGAAGGCATCCCAGTCACTGCTGAGAAGATTACAACATTAGCAAAAGCTGCCAATGTCTCTGTTGAGTCTTACTGGCCTGGCTTGTTCGCCAAGCTTGCTGAGAAGAGAGACATTGACGATCTTATCCTGAATGTTGGCGTTGGTGGCGGCGCTAGTGCAGTAGCCGCTGCTGCCCCAGGTGTCGGCGTGGCTGCCGCCCCAGCTGCTGCTGCTCCTCCACCAGAGGAGAAGAACGAAGAACCCAAGGAAGAAAGTGATGACGAGGGACTTTTCAATTTGTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

113

Amino Acids

11.45

Weight (kDa)

4.22

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 111	1.5e-20	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	198, 216, 246
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	127, 226
AluBI	AGCT	4 cut(s)	16, 98, 145, 254
AluI	AGCT	4 cut(s)	16, 98, 145, 254
Alw26I	GTCTC	2 cut(s)	112, 153
AlwNI	CAGNNNCTG	2 cut(s)	68, 257
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	7 cut(s)	98, 218, 221, 242, 254, 257, 260
AspLEI	GCGC	1 cut(s)	203
BbvI	GCAGC	7 cut(s)	85, 205, 208, 229, 241, 244, 247
BciT130I	CCWGG	2 cut(s)	129, 228
BcoDI	GTCTC	2 cut(s)	112, 153
BfaI	CTAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	129, 228
BmrFI	CCNGG	2 cut(s)	129, 228
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	226, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	62, 128
BseBI	CCWGG	2 cut(s)	129, 228
BseDI	CCNNGG	2 cut(s)	226, 294
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	63, 141
BseNI	ACTGG	2 cut(s)	62, 128
BseRI	GAGGAG	2 cut(s)	255, 290
BseXI	GCAGC	7 cut(s)	85, 205, 208, 229, 241, 244, 247
BseYI	CCCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	2 cut(s)	112, 153
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	3 cut(s)	198, 216, 246
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	64, 142
BsrI	ACTGG	2 cut(s)	62, 128
BssECI	CCNNGG	2 cut(s)	226, 294
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	129, 228
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	18, 22, 147
BstDEI	CTNAG	2 cut(s)	72, 150
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	112, 153
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	8 cut(s)	98, 146, 195, 215, 221, 251, 254, 260
BstNI	CCWGG	2 cut(s)	129, 228
BstSCI	CCNGG	2 cut(s)	127, 226
BstV1I	GCAGC	7 cut(s)	85, 205, 208, 229, 241, 244, 247
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	3 cut(s)	18, 22, 147
CaiI	CAGNNNCTG	2 cut(s)	68, 257
CfoI	GCGC	1 cut(s)	203
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	9 cut(s)	8, 16, 98, 127, 132, 145, 215, 242, 254
CviKI_1	RGCY	9 cut(s)	8, 16, 98, 127, 132, 145, 215, 242, 254
DdeI	CTNAG	2 cut(s)	72, 150
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	294
EcoRII	CCWGG	2 cut(s)	127, 226
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	50
FaiI	YATR	1 cut(s)	48
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	1 cut(s)	46
FokI	GGATG	1 cut(s)	44
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	1 cut(s)	202
GsaI	CCCAGC	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	24, 209
HpyF10VI	GCNNNNNNNGC	8 cut(s)	98, 146, 195, 215, 221, 251, 254, 260
HpyF3I	CTNAG	2 cut(s)	72, 150
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	75, 109, 114, 141, 191, 213, 240, 264, 285
Lsp1109I	GCAGC	7 cut(s)	85, 205, 208, 229, 241, 244, 247
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	26, 64
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	5 cut(s)	88, 166, 292, 299, 311
MluCI	AATT	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	53, 268, 276, 307
MspA1I	CMGCKG	2 cut(s)	218, 254
MspR9I	CCNGG	2 cut(s)	129, 228
MvaI	CCWGG	2 cut(s)	129, 228
MwoI	GCNNNNNNNGC	8 cut(s)	98, 146, 195, 215, 221, 251, 254, 260
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	127, 226
PspFI	CCCAGC	1 cut(s)	250
PspGI	CCWGG	2 cut(s)	127, 226
PstNI	CAGNNNCTG	2 cut(s)	68, 257
PvuII	CAGCTG	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	129, 228
SetI	ASST	5 cut(s)	18, 100, 147, 232, 256
SfaNI	GCATC	1 cut(s)	66
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	3 cut(s)	198, 216, 246
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	127, 226
StyI	CCWWGG	1 cut(s)	294
TaqI	TCGA	1 cut(s)	333
TasI	AATT	1 cut(s)	325
TauI	GCSGC	3 cut(s)	201, 218, 248
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	7 cut(s)	98, 218, 221, 242, 254, 257, 260
Tsp45I	GTSAC	1 cut(s)	64
TspRI	CASTG	1 cut(s)	73
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.