Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Reverse (-)

2313010 .. 2313219

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1033000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTCGGCTTCAGAGCTTGCTTGCACCTACGCCACTCTGATCCTCCATGACGAAGGCATCCCCGTCACTGCCGAGAAGATTGCAACCTTGGTGAAAGTTGCCAATGTCCCTGTCGAGTCTTACTGGCCTGGCCTCTTCGCCAAGCTTTCCGGGAAGAGAAACATCGAGGATCTTGTCCTGAATGCTAAATCATTCACTAGTACTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

70

Amino Acids

7.46

Weight (kDa)

6.03

Isoelectric Point (pI)

59.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 65	1.9e-07	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	34, 177
AfaI	GTAC	1 cut(s)	202
AhlI	ACTAGT	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	2 cut(s)	16, 145
AluI	AGCT	2 cut(s)	16, 145
AlwI	GGATC	2 cut(s)	34, 177
AoxI	GGCC	2 cut(s)	125, 130
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	151
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	1 cut(s)	198
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	129, 151
BmrFI	CCNGG	2 cut(s)	129, 151
BmsI	GCATC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	127, 132
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	127, 132
Bsp143I	GATC	2 cut(s)	39, 169
BspANI	GGCC	2 cut(s)	127, 132
BspPI	GGATC	2 cut(s)	34, 177
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	39, 169
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	140, 149
BstC8I	GCNNGC	2 cut(s)	18, 22
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	42, 172
BstMBI	GATC	2 cut(s)	39, 169
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	2 cut(s)	127, 149
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	127, 132
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	18, 22
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	5 cut(s)	8, 16, 127, 132, 145
CviKI_1	RGCY	5 cut(s)	8, 16, 127, 132, 145
CviQI	GTAC	1 cut(s)	201
DpnI	GATC	2 cut(s)	41, 171
DpnII	GATC	2 cut(s)	39, 169
Eam1104I	CTCTTC	2 cut(s)	140, 149
EarI	CTCTTC	2 cut(s)	140, 149
Eco130I	CCWWGG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	50
FaiI	YATR	1 cut(s)	48
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	46
FokI	GGATG	1 cut(s)	44
FspBI	CTAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	127, 132
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	13, 39
Hpy188III	TCNNGA	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	24, 83
Hsp92II	CATG	1 cut(s)	50
Kzo9I	GATC	2 cut(s)	39, 169
LpnPI	CCDG	6 cut(s)	109, 114, 123, 141, 163, 191
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	41, 171
MboI	GATC	2 cut(s)	39, 169
MboII	GAAGA	3 cut(s)	88, 127, 166
MflI	RGATCY	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	53, 143, 160
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	129, 151
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	129
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	2 cut(s)	39, 169
NlaIII	CATG	1 cut(s)	50
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	187
PfoI	TCCNGGA	1 cut(s)	149
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	39, 169
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	129, 151
SetI	ASST	4 cut(s)	18, 29, 89, 147
SfaNI	GCATC	1 cut(s)	66
SpeI	ACTAGT	1 cut(s)	197
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	127, 149
StyI	CCWWGG	1 cut(s)	87
TaqI	TCGA	2 cut(s)	114, 165
TatI	WGTACW	1 cut(s)	200
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspRI	CASTG	1 cut(s)	73
XspI	CTAG	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.