Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Forward (+)

31608083 .. 31608418

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1188200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCGGCTTCAGAGCTTGCTTGCACCTACGCCACACTGATCCTCCATGACGAAGGCATCCCCGTCACTGCCGAGAAGATTGCAACCTTGGTGAAAGCCGCTAACGTCCCTGTCGACTCTTACTGGCCCAGCCTCTTCGCCAAACTTGCCGAGAAGAGAAACATTGAAGATCTTGTCCTGAATGTTGGCTCTGGCGGTGCAGTTTCTGTAGCTGCCCCAGGTGTTGCCGAAGCTGCCGCCCCTGCTGCTGCTCCTCCACCAGAGGATAAGAAGAAGAAGGAAGAACCCGAGGAAGAGAGTGACGACGACTGTCCAATTTTCGATTTGTTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

112

Amino Acids

11.64

Weight (kDa)

4.3

Isoelectric Point (pI)

72.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 110	2.5e-24	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	3 cut(s)	99, 195, 237
AclWI	GGATC	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	3 cut(s)	16, 212, 233
AluI	AGCT	3 cut(s)	16, 212, 233
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	4 cut(s)	212, 233, 245, 248
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	287
BbvI	GCAGC	4 cut(s)	199, 220, 232, 235
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	207
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	6 cut(s)	99, 213, 234, 237, 246, 249
BlsI	GCNGC	6 cut(s)	100, 214, 235, 238, 247, 250
Bme1390I	CCNGG	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	66
BoxI	GACNNNNGTC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	87, 217, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	87, 217, 288
BseGI	GGATG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	4 cut(s)	199, 220, 232, 235
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	39, 169
BspACI	CCGC	3 cut(s)	99, 195, 237
BspANI	GGCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	87, 217, 288
BssMI	GATC	2 cut(s)	39, 169
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	3 cut(s)	140, 149, 288
BstC8I	GCNNGC	2 cut(s)	18, 22
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	42, 172
BstMBI	GATC	2 cut(s)	39, 169
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 233, 242, 245
BstNI	CCWGG	1 cut(s)	219
BstPAI	GACNNNNGTC	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	4 cut(s)	199, 220, 232, 235
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	35, 66
Cac8I	GCNNGC	2 cut(s)	18, 22
CaiI	CAGNNNCTG	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	126
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	8 cut(s)	8, 16, 98, 127, 132, 189, 212, 233
CviKI_1	RGCY	8 cut(s)	8, 16, 98, 127, 132, 189, 212, 233
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	2 cut(s)	41, 171
DpnII	GATC	2 cut(s)	39, 169
Eam1104I	CTCTTC	3 cut(s)	140, 149, 288
EarI	CTCTTC	3 cut(s)	140, 149, 288
Eco130I	CCWWGG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	50
FaiI	YATR	1 cut(s)	48
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	6 cut(s)	99, 213, 234, 237, 246, 249
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	6 cut(s)	99, 213, 234, 237, 246, 249
GluI	GCNGC	6 cut(s)	99, 213, 234, 237, 246, 249
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	115, 330
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	2 cut(s)	115, 330
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	47, 271
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	24, 83, 200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 233, 242, 245
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	50
Kzo9I	GATC	2 cut(s)	39, 169
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	9 cut(s)	109, 123, 142, 177, 191, 204, 231, 255, 273
Lsp1109I	GCAGC	4 cut(s)	199, 220, 232, 235
LweI	GCATC	1 cut(s)	66
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	64, 299
MalI	GATC	2 cut(s)	41, 171
MboI	GATC	2 cut(s)	39, 169
MboII	GAAGA	8 cut(s)	88, 127, 166, 179, 283, 286, 293, 305
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	5 cut(s)	53, 143, 256, 264, 283
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	146, 233, 242, 245
NdeII	GATC	2 cut(s)	39, 169
NlaIII	CATG	1 cut(s)	50
NmeAIII	GCCGAG	2 cut(s)	97, 175
NmuCI	GTSAC	2 cut(s)	64, 299
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PkrI	GCNGC	6 cut(s)	100, 214, 235, 238, 247, 250
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PshAI	GACNNNNGTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	126
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	169
SalI	GTCGAC	1 cut(s)	113
SatI	GCNGC	6 cut(s)	99, 213, 234, 237, 246, 249
Sau3AI	GATC	2 cut(s)	39, 169
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	7 cut(s)	18, 29, 89, 108, 214, 223, 235
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	3 cut(s)	99, 195, 237
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	114, 321
TasI	AATT	1 cut(s)	315
TauI	GCSGC	2 cut(s)	101, 239
TscAI	CASTG	2 cut(s)	42, 73
TseFI	GTSAC	2 cut(s)	64, 299
TseI	GCWGC	4 cut(s)	212, 233, 245, 248
Tsp45I	GTSAC	2 cut(s)	64, 299
TspRI	CASTG	2 cut(s)	42, 73
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.