Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Reverse (-)

14816450 .. 14817442

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCGTTTTCATCCGCAGAGCACTCTCAAGCACAATCACTCTCAGATCTCATCTTCCTCAGAACCATGTCGATTTCAGAGATTGCTTGCACTTACGCCGCTTTGATCCTCCACGACGATGGCATCCCCATCACTGCTGAGAAGATTGCCGCTTTGGTCAAAGCTGCCAATGTCTCTGTGGAGTCCTACTGGCCTGGTTTGTTTGCCAAGCTTGCCGAGAAGAGAGACATCGGTGACCTCATCTTGAATGTAGGTGCCGGAGGCGGTGGCGGTGCTGTTGCCGTTGCTACCCCAGGTGCAGGTGCAGGTGCCGCTGCCCCTGCTGCAGCTGCTCCAGTGGAAGAGAAGAAGGAGGAGCCAAAGGAAGAGAGTGATGAAGATATGGGTTTCAGCTTGTTCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

135

Amino Acids

13.71

Weight (kDa)

4.43

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	44 - 133	1.1e-26	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	290, 296
Acc36I	ACCTGC	2 cut(s)	290, 296
AccB1I	GGYRCC	2 cut(s)	254, 308
AciI	CCGC	6 cut(s)	15, 99, 150, 264, 270, 312
AclWI	GGATC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	193, 292
AluBI	AGCT	4 cut(s)	164, 211, 329, 393
AluI	AGCT	4 cut(s)	164, 211, 329, 393
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	178, 219
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	5 cut(s)	164, 314, 323, 326, 329
AsuHPI	GGTGA	1 cut(s)	245
BanI	GGYRCC	2 cut(s)	254, 308
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	5 cut(s)	151, 301, 310, 316, 338
BccI	CCATC	2 cut(s)	113, 137
BceAI	ACGGC	1 cut(s)	266
BciT130I	CCWGG	2 cut(s)	195, 294
BcoDI	GTCTC	2 cut(s)	178, 219
BfaI	CTAG	1 cut(s)	403
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	2 cut(s)	290, 296
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	8 cut(s)	99, 150, 165, 312, 315, 324, 327, 330
BlsI	GCNGC	8 cut(s)	100, 151, 166, 313, 316, 325, 328, 331
Bme1390I	CCNGG	2 cut(s)	195, 294
BmiI	GGNNCC	3 cut(s)	256, 310, 357
BmrFI	CCNGG	2 cut(s)	195, 294
BmsI	GCATC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	194, 335
BseBI	CCWGG	2 cut(s)	195, 294
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	2 cut(s)	11, 123
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	3 cut(s)	57, 73, 129
BseNI	ACTGG	2 cut(s)	194, 335
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	5 cut(s)	151, 301, 310, 316, 338
BsgI	GTGCAG	2 cut(s)	318, 324
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	2 cut(s)	254, 308
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	178, 219
BsnI	GGCC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	46, 105
BspACI	CCGC	6 cut(s)	15, 99, 150, 264, 270, 312
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	3 cut(s)	56, 72, 130
BspLI	GGNNCC	3 cut(s)	256, 310, 357
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	2 cut(s)	290, 296
BspPI	GGATC	1 cut(s)	100
BspT107I	GGYRCC	2 cut(s)	254, 308
BsrI	ACTGG	2 cut(s)	194, 335
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	46, 105
Bst2UI	CCWGG	2 cut(s)	195, 294
Bst6I	CTCTTC	3 cut(s)	215, 336, 360
BstC8I	GCNNGC	2 cut(s)	88, 213
BstDEI	CTNAG	3 cut(s)	43, 59, 138
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	11, 123
BstKTI	GATC	2 cut(s)	49, 108
BstMAI	GTCTC	2 cut(s)	178, 219
BstMBI	GATC	2 cut(s)	46, 105
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 311, 320, 323, 329
BstNI	CCWGG	2 cut(s)	195, 294
BstPI	GGTNACC	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	193, 292
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	5 cut(s)	151, 301, 310, 316, 338
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	11, 123
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	132, 342
BveI	ACCTGC	2 cut(s)	290, 296
Cac8I	GCNNGC	2 cut(s)	88, 213
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	6 cut(s)	164, 193, 211, 329, 358, 393
CviKI_1	RGCY	6 cut(s)	164, 193, 211, 329, 358, 393
DdeI	CTNAG	3 cut(s)	43, 59, 138
DpnI	GATC	2 cut(s)	48, 107
DpnII	GATC	2 cut(s)	46, 105
Eam1104I	CTCTTC	3 cut(s)	215, 336, 360
EarI	CTCTTC	3 cut(s)	215, 336, 360
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	193, 292
FaeI	CATG	1 cut(s)	70
FaiI	YATR	2 cut(s)	68, 383
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	8 cut(s)	99, 150, 165, 312, 315, 324, 327, 330
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	8 cut(s)	99, 150, 165, 312, 315, 324, 327, 330
FspBI	CTAG	1 cut(s)	403
GluI	GCNGC	8 cut(s)	99, 150, 165, 312, 315, 324, 327, 330
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	46, 62, 79
Hpy188III	TCNNGA	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	343
HpyCH4V	TGCA	4 cut(s)	90, 299, 305, 326
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 311, 320, 323, 329
HpyF3I	CTNAG	3 cut(s)	43, 59, 138
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	46, 105
LmnI	GCTCC	2 cut(s)	337, 355
Lsp1109I	GCAGC	5 cut(s)	151, 301, 310, 316, 338
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	2 cut(s)	48, 107
MboI	GATC	2 cut(s)	46, 105
MboII	GAAGA	7 cut(s)	46, 154, 232, 353, 358, 377, 389
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	5 cut(s)	68, 119, 248, 254, 346
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	2 cut(s)	314, 329
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	2 cut(s)	195, 294
MvaI	CCWGG	2 cut(s)	195, 294
MwoI	GCNNNNNNNGC	5 cut(s)	212, 311, 320, 323, 329
NdeII	GATC	2 cut(s)	46, 105
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	3 cut(s)	256, 310, 357
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	233
PaqCI	CACCTGC	2 cut(s)	290, 296
PkrI	GCNGC	8 cut(s)	100, 151, 166, 313, 316, 325, 328, 331
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	193, 292
PspEI	GGTNACC	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	193, 292
PspN4I	GGNNCC	3 cut(s)	256, 310, 357
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	8 cut(s)	99, 150, 165, 312, 315, 324, 327, 330
Sau3AI	GATC	2 cut(s)	46, 105
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	195, 294
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	9 cut(s)	166, 213, 240, 256, 298, 304, 310, 331, 395
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
SsiI	CCGC	6 cut(s)	15, 99, 150, 264, 270, 312
SspMI	CTAG	1 cut(s)	403
StyD4I	CCNGG	2 cut(s)	193, 292
TaqI	TCGA	2 cut(s)	71, 399
TauI	GCSGC	3 cut(s)	101, 152, 314
TscAI	CASTG	2 cut(s)	139, 342
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	5 cut(s)	164, 314, 323, 326, 329
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	390
TspRI	CASTG	2 cut(s)	139, 342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XspI	CTAG	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.