Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Forward (+)

52759252 .. 52760922

Gene Structure 1671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG296500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTCGATTTCAGAGATTGCTTGCACTTACGCCGCTTTGATCCTCCATGACGATGGCATCCCCATCACTGCTGAGAAGATTGCCGCTTTGGTCAAAGCTGCCAATGTCTCTGTGGAGTCCTACTGGCCTGGTTTGTTTGCCAAGCTTGCTGAGAAGAGAGACATCGGTGACCTCATCTTGAATGTTGGTGCCGGAGGCGGTGGCGGTGCTGTTGCCGTTTCTGCCCCAGGTGCAGGCGCCGCCGCCCCTGCTGCAGCTGCTCCAGTGGAAGAGAAGAAGGTAGTCGAATTATTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

99

Amino Acids

9.84

Weight (kDa)

4.75

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 93	1.6e-16	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 236
AciI	CCGC	6 cut(s)	33, 84, 198, 204, 240, 243
AclWI	GGATC	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	127, 226
AluBI	AGCT	3 cut(s)	98, 145, 257
AluI	AGCT	3 cut(s)	98, 145, 257
Alw26I	GTCTC	2 cut(s)	112, 153
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	4 cut(s)	98, 251, 254, 257
AspLEI	GCGC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	188, 236
BbvI	GCAGC	4 cut(s)	85, 238, 244, 266
BccI	CCATC	2 cut(s)	47, 71
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	129, 228
BcoDI	GTCTC	2 cut(s)	112, 153
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	8 cut(s)	33, 84, 99, 240, 243, 252, 255, 258
BlsI	GCNGC	8 cut(s)	34, 85, 100, 241, 244, 253, 256, 259
Bme1390I	CCNGG	2 cut(s)	129, 228
BmiI	GGNNCC	2 cut(s)	190, 238
BmrFI	CCNGG	2 cut(s)	129, 228
BmsI	GCATC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	128, 263
BseBI	CCWGG	2 cut(s)	129, 228
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	63, 141
BseNI	ACTGG	2 cut(s)	128, 263
BseXI	GCAGC	4 cut(s)	85, 238, 244, 266
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	2 cut(s)	188, 236
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	2 cut(s)	112, 153
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	6 cut(s)	33, 84, 198, 204, 240, 243
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	64, 142
BspLI	GGNNCC	2 cut(s)	190, 238
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	2 cut(s)	188, 236
BsrI	ACTGG	2 cut(s)	128, 263
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	129, 228
Bst6I	CTCTTC	2 cut(s)	149, 264
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	22, 147, 235
BstDEI	CTNAG	2 cut(s)	72, 150
BstEII	GGTNACC	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	2 cut(s)	112, 153
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 221, 230, 239, 248, 251, 257
BstNI	CCWGG	2 cut(s)	129, 228
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	127, 226
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	85, 238, 244, 266
BstXI	CCANNNNNNTGG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 270
Cac8I	GCNNGC	3 cut(s)	22, 147, 235
CfoI	GCGC	1 cut(s)	239
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	4 cut(s)	98, 127, 145, 257
CviKI_1	RGCY	4 cut(s)	98, 127, 145, 257
DdeI	CTNAG	2 cut(s)	72, 150
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	149, 264
EarI	CTCTTC	2 cut(s)	149, 264
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	127, 226
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
FaeI	CATG	1 cut(s)	50
FaiI	YATR	2 cut(s)	48, 298
FatI	CATG	1 cut(s)	46
Fnu4HI	GCNGC	8 cut(s)	33, 84, 99, 240, 243, 252, 255, 258
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	8 cut(s)	33, 84, 99, 240, 243, 252, 255, 258
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	8 cut(s)	33, 84, 99, 240, 243, 252, 255, 258
GsuI	CTGGAG	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	24, 233, 254
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 221, 230, 239, 248, 251, 257
HpyF3I	CTNAG	2 cut(s)	72, 150
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	1 cut(s)	237
KasI	GGCGCC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	9 cut(s)	109, 114, 141, 205, 213, 219, 240, 261, 276
Lsp1109I	GCAGC	4 cut(s)	85, 238, 244, 266
LweI	GCATC	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	4 cut(s)	88, 166, 281, 286
MluCI	AATT	1 cut(s)	287
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	53, 182, 188
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	129, 228
MvaI	CCWGG	2 cut(s)	129, 228
MwoI	GCNNNNNNNGC	7 cut(s)	146, 221, 230, 239, 248, 251, 257
NarI	GGCGCC	1 cut(s)	237
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	2 cut(s)	190, 238
NmuCI	GTSAC	1 cut(s)	167
PkrI	GCNGC	8 cut(s)	34, 85, 100, 241, 244, 253, 256, 259
PleI	GAGTC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	127, 226
PspEI	GGTNACC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	127, 226
PspN4I	GGNNCC	2 cut(s)	190, 238
PstI	CTGCAG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	8 cut(s)	33, 84, 99, 240, 243, 252, 255, 258
Sau3AI	GATC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	129, 228
SetI	ASST	6 cut(s)	100, 147, 174, 232, 259, 282
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	1 cut(s)	252
SfoI	GGCGCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	6 cut(s)	33, 84, 198, 204, 240, 243
SspDI	GGCGCC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	127, 226
TaqI	TCGA	2 cut(s)	5, 285
TasI	AATT	1 cut(s)	287
TauI	GCSGC	4 cut(s)	35, 86, 242, 245
TscAI	CASTG	2 cut(s)	73, 270
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	4 cut(s)	98, 251, 254, 257
Tsp45I	GTSAC	1 cut(s)	167
TspRI	CASTG	2 cut(s)	73, 270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.