Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004595

Physical Location & Seq

Genomic Coordinates Forward (+)

23443285 .. 23445550

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G197300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCAGTCTCAGAGCTTGCTTGCACTTACGCCGCCCTAGTCCTCCATGACGATGGCATCCCCATCACTGCTGAGAAGATTGCAACATTGGTGAAAGCTGCCAATGTCACAGTTGAGTCCTACTGGCCTGGATTGTTCGCTAAGCTCGCCGAGAAGCGAAACATTGAGGACCTTATTCTGAATGTCGGTGCCGGAGGGGGTGGTGGTGCAGTTGCTGTTGCCGCCCCAGGTGCAGGTGCCGCTGCCCCTGCTGCTGCTCCCGCAGCAGAGGAGAAGAAGGAGGAACCCAAGGAAGAAAGTGATGACGATATGGGATTCAGCTTGTTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009893 GO:0009987 GO:0010467 GO:0010562 GO:0010604 GO:0015934 GO:0016020 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0034641 GO:0034645 GO:0042325 GO:0042327 GO:0042788 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080090 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

111

Amino Acids

11.16

Weight (kDa)

4.36

Isoelectric Point (pI)

60.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004595)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01100 AT1G01100 AT1G01100 AT1G01100 AT4G00810 AT4G00810 AT5G47700 AT5G47700
fragaria_vesca	FvH4_7g17620
malus_domestica	MD05G1185100.v1.1 MD05G1188200.v1.1 MD05G1188300.v1.1 MD07G1159200.v1.1 MD10G1175700.v1.1 MD13G1033000.v1.1
prunus_persica	Prupe.2G197300_v2.0.a1
pyrus_communis	pycom05g17290 pycom05g17300 pycom10g15140
rosa_chinensis	RchiOBHm_Chr1g0361051
rosa_laevigata	RLG00000027752
rosa_multiflora	Rmu_sc0002437.1_g000001 Rmu_sc0033549.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295470
rosa_rugosa	Rorug01G0285100 Rorug06G0077500
rosa_samantha	Rh1AG296500 Rh1BG260800 Rh1CG278100 Rh1DG290800
rosa_wichuraiana	Rw1G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	224
AccB1I	GGYRCC	2 cut(s)	188, 236
AciI	CCGC	4 cut(s)	33, 222, 240, 261
AfiI	CCNNNNNNNGG	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	127, 226
AluBI	AGCT	4 cut(s)	16, 98, 145, 321
AluI	AGCT	4 cut(s)	16, 98, 145, 321
Alw26I	GTCTC	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	5 cut(s)	98, 242, 251, 254, 263
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	188, 236
BbvI	GCAGC	5 cut(s)	85, 229, 238, 241, 275
BccI	CCATC	2 cut(s)	47, 71
BciT130I	CCWGG	2 cut(s)	129, 228
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	8 cut(s)	33, 99, 222, 240, 243, 252, 255, 264
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	8 cut(s)	34, 100, 223, 241, 244, 253, 256, 265
Bme1390I	CCNGG	2 cut(s)	129, 228
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	3 cut(s)	190, 238, 285
BmrFI	CCNGG	2 cut(s)	129, 228
BmsI	GCATC	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	226, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	129, 228
BseDI	CCNNGG	2 cut(s)	226, 288
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	24, 63
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	5 cut(s)	85, 229, 238, 241, 275
BsgI	GTGCAG	2 cut(s)	228, 252
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	2 cut(s)	188, 236
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	127
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	4 cut(s)	33, 222, 240, 261
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	23, 64
BspLI	GGNNCC	3 cut(s)	190, 238, 285
BspMI	ACCTGC	1 cut(s)	224
BspT107I	GGYRCC	2 cut(s)	188, 236
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	226, 288
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	129, 228
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	3 cut(s)	18, 22, 147
BstDEI	CTNAG	3 cut(s)	10, 72, 141
BstF5I	GGATG	1 cut(s)	57
BstMAI	GTCTC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 221, 230, 239, 248, 251, 260, 263
BstNI	CCWGG	2 cut(s)	129, 228
BstSCI	CCNGG	2 cut(s)	127, 226
BstV1I	GCAGC	5 cut(s)	85, 229, 238, 241, 275
BstXI	CCANNNNNNTGG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	3 cut(s)	18, 22, 147
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	169
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	5 cut(s)	16, 98, 127, 145, 321
CviKI_1	RGCY	5 cut(s)	16, 98, 127, 145, 321
DdeI	CTNAG	3 cut(s)	10, 72, 141
Eco130I	CCWWGG	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	127, 226
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	1 cut(s)	50
FaiI	YATR	2 cut(s)	48, 311
FatI	CATG	1 cut(s)	46
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	8 cut(s)	33, 99, 222, 240, 243, 252, 255, 264
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	8 cut(s)	33, 99, 222, 240, 243, 252, 255, 264
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	8 cut(s)	33, 99, 222, 240, 243, 252, 255, 264
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	1 cut(s)	50
HinfI	GANTC	2 cut(s)	116, 315
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	13, 180
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	24, 83, 209, 233
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 221, 230, 239, 248, 251, 260, 263
HpyF3I	CTNAG	3 cut(s)	10, 72, 141
Hsp92II	CATG	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	109, 114, 141, 205, 213, 219, 240, 261
Lsp1109I	GCAGC	5 cut(s)	85, 229, 238, 241, 275
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	106
MboII	GAAGA	3 cut(s)	88, 286, 305
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	5 cut(s)	53, 160, 188, 262, 274
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	129, 228
MvaI	CCWGG	2 cut(s)	129, 228
MwoI	GCNNNNNNNGC	8 cut(s)	146, 221, 230, 239, 248, 251, 260, 263
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	3 cut(s)	190, 238, 285
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	8 cut(s)	34, 100, 223, 241, 244, 253, 256, 265
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	127, 226
PspGI	CCWGG	2 cut(s)	127, 226
PspN4I	GGNNCC	3 cut(s)	190, 238, 285
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	8 cut(s)	33, 99, 222, 240, 243, 252, 255, 264
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	129, 228
SetI	ASST	7 cut(s)	18, 100, 147, 174, 232, 238, 323
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	51
SsiI	CCGC	4 cut(s)	33, 222, 240, 261
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	127, 226
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	112
TauI	GCSGC	3 cut(s)	35, 224, 242
TfiI	GAWTC	1 cut(s)	315
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	5 cut(s)	98, 242, 251, 254, 263
Tsp45I	GTSAC	1 cut(s)	106
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	169
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.