MD05G1185100.v1.1

translational elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0004595
Physical Location & Seq
Reverse (-)
31367538 .. 31367891
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1185100.v1.1.491

Sequence Viewer

Length: 354 bp
ATGAGGGAGAACAGAAATGAGAACGGAATATCAGTGAAGAGCGTGCGCATACTCACACATGTAAATGCATTAATATTTTCTCTTTTTTCAGAAACTCAAAAAACAAGGAATCCCCATGACGAAGGCATCCCCATTACCGCCGAGAAGATTGCAACCTTGGTGAAAGCTGCCAACGTCCCCGTCGAGCCTTACTGGCCTGGCCTGTTCACCAAGCTCGCTAAGAAGAAAAACATTGAAGATCTTATCCTGAATTCTGGTGCTGGTGGTGCTGTTGCCGCTCCTGCCCCAGGTGTACGAGATGCTACGGAGGATAAGAAGGAGGAACCTGAGGAAGAGAGTGACCACCAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000322 GO:0000323 GO:0000324 GO:0000956 GO:0001932 GO:0001934 GO:0002181 GO:0002182 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006414 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0014074 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0019207 GO:0019209 GO:0019220 GO:0019222 GO:0019439 GO:0019538 GO:0019887 GO:0022625 GO:0022626 GO:0030234 GO:0030295 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032991 GO:0033036 GO:0033365 GO:0033674 GO:0034248 GO:0034250 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042221 GO:0042325 GO:0042327 GO:0042788 GO:0042886 GO:0043021 GO:0043043 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043549 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0045727 GO:0045859 GO:0045860 GO:0045937 GO:0046483 GO:0046683 GO:0046700 GO:0046907 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051591 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070727 GO:0070887 GO:0070972 GO:0071310 GO:0071320 GO:0071407 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0090150 GO:0090304 GO:0098772 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1904400 GO:1904401 GO:1904587 GO:1904588 GO:1990904 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 ko01110 ko03010 ko03040 ko04657 ko05168 map00564 map01100 map01110 map03010 map03040 map04657 map05168
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

118

Amino Acids

12.89

Weight (kDa)

5.62

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 45 - 114 5.7e-16 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 47
AccBSI CCGCTC 1 cut(s) 278
AciI CCGC 2 cut(s) 138, 276
AcsI RAATTY 1 cut(s) 250
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 2 cut(s) 196, 286
AluBI AGCT 2 cut(s) 167, 214
AluI AGCT 2 cut(s) 167, 214
AoxI GGCC 2 cut(s) 194, 199
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 250
AseI ATTAAT 1 cut(s) 71
AspLEI GCGC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 172, 199
AxyI CCTNAGG 1 cut(s) 327
BbvI GCAGC 1 cut(s) 154
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 2 cut(s) 198, 288
BglI GCCNNNNNGGC 1 cut(s) 193
BglII AGATCT 1 cut(s) 238
BisI GCNGC 2 cut(s) 168, 276
BlsI GCNGC 2 cut(s) 169, 277
Bme1390I CCNGG 2 cut(s) 198, 288
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 2 cut(s) 198, 288
BmsI GCATC 2 cut(s) 135, 289
BsaJI CCNNGG 2 cut(s) 156, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 197, 346
Bse21I CCTNAGG 1 cut(s) 327
BseBI CCWGG 2 cut(s) 198, 288
BseDI CCNNGG 2 cut(s) 156, 286
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 2 cut(s) 197, 346
BseXI GCAGC 1 cut(s) 154
BshFI GGCC 2 cut(s) 196, 201
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 2 cut(s) 196, 201
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 2 cut(s) 138, 276
BspANI GGCC 2 cut(s) 196, 201
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 324
BspQI GCTCTTC 1 cut(s) 32
BsrBI CCGCTC 1 cut(s) 278
BsrI ACTGG 2 cut(s) 197, 346
BssECI CCNNGG 2 cut(s) 156, 286
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 198, 288
Bst6I CTCTTC 2 cut(s) 32, 327
BstC8I GCNNGC 2 cut(s) 44, 216
BstDEI CTNAG 2 cut(s) 219, 327
BstENI CCTNNNNNAGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 4 cut(s) 193, 266, 275, 281
BstNI CCWGG 2 cut(s) 198, 288
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 196, 286
BstV1I GCAGC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 2 cut(s) 196, 201
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 39, 353
Cac8I GCNNGC 2 cut(s) 44, 216
CfoI GCGC 1 cut(s) 48
Csp6I GTAC 1 cut(s) 293
CviAII CATG 2 cut(s) 59, 116
CviJI RGCY 5 cut(s) 167, 187, 196, 201, 214
CviKI_1 RGCY 5 cut(s) 167, 187, 196, 201, 214
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 2 cut(s) 219, 327
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 32, 327
EarI CTCTTC 2 cut(s) 32, 327
Eco130I CCWWGG 1 cut(s) 156
Eco81I CCTNAGG 1 cut(s) 327
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 196, 286
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 62, 119
FaiI YATR 3 cut(s) 50, 60, 117
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 58, 115
Fnu4HI GCNGC 2 cut(s) 168, 276
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 168, 276
FspAI RTGCGCAY 1 cut(s) 47
FspI TGCGCA 1 cut(s) 47
GlaI GCGC 1 cut(s) 47
GluI GCNGC 2 cut(s) 168, 276
HaeIII GGCC 2 cut(s) 196, 201
HhaI GCGC 1 cut(s) 48
Hin1II CATG 2 cut(s) 62, 119
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 1 cut(s) 109
HphI GGTGA 2 cut(s) 172, 199
Hpy166II GTNNAC 2 cut(s) 207, 293
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 2 cut(s) 207, 293
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 116, 310
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 68, 152
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 266, 275, 281
HpyF3I CTNAG 2 cut(s) 219, 327
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 2 cut(s) 62, 119
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 2 cut(s) 135, 289
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 338
MalI GATC 1 cut(s) 240
MbiI CCGCTC 1 cut(s) 278
MboI GATC 1 cut(s) 238
MboII GAAGA 5 cut(s) 49, 157, 235, 248, 344
MflI RGATCY 1 cut(s) 238
MluCI AATT 1 cut(s) 250
MnlI CCTC 3 cut(s) 301, 313, 322
Mph1103I ATGCAT 1 cut(s) 70
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 198, 288
MvaI CCWGG 2 cut(s) 198, 288
MwoI GCNNNNNNNGC 4 cut(s) 193, 266, 275, 281
NdeII GATC 1 cut(s) 238
NlaIII CATG 2 cut(s) 62, 119
NlaIV GGNNCC 1 cut(s) 324
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 338
NsbI TGCGCA 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 70
NspI RCATGY 1 cut(s) 62
PciI ACATGT 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 169, 277
PscI ACATGT 1 cut(s) 58
PshBI ATTAAT 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 196, 286
PspGI CCWGG 2 cut(s) 196, 286
PspN4I GGNNCC 1 cut(s) 324
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 2 cut(s) 168, 276
Sau3AI GATC 1 cut(s) 238
ScrFI CCNGG 2 cut(s) 198, 288
SetI ASST 6 cut(s) 158, 169, 177, 216, 292, 328
SfaNI GCATC 2 cut(s) 135, 289
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 1 cut(s) 250
SsiI CCGC 2 cut(s) 138, 276
SspI AATATT 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 196, 286
StyI CCWWGG 1 cut(s) 156
TaiI ACGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 183
TasI AATT 1 cut(s) 250
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 2 cut(s) 39, 353
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 338
TspGWI ACGGA 2 cut(s) 39, 320
TspRI CASTG 2 cut(s) 39, 353
VspI ATTAAT 1 cut(s) 71
XagI CCTNNNNNAGG 1 cut(s) 285
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.