Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Forward (+)

72339 .. 74096

Gene Structure 1758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGCAGCAGCAGCAGTCTCCGCAAATGTTTCCGATGGTTCCGTCGATTCCCCCTGCTAACAACATCACTACCGAACAGATCCAAAAGTACCTTGATGAGAACAAGAAGCTGATTATGGCCATCATGGAAAACCAGAATCTCGGTAAACTTGCTGAGTGCGCCCAGTACCAAGCTCTTCTCCAGAAGAACTTGATGTATCTTGCTGCAATTGCTGATGCTCAACCCCCACCACCTACGCCAGGACCTTCACCATCTACAGCTGTCGCTGCCCAGATGGCAACACCGCATTCTGGGATGCAACCACCTAGCTACTTCATGCAACACCCACAAGCATCCCCTGCAGGGATTTTCGCTCCAAGGGGTCCTTTACAGTTTGGTAGCCCACTCCAGTTTCAGGATCCGCAACAGCAGCAGCAGATACATCAGCAAGCTATGCAAGGACACATGGGGATTAGACCAATGGGTATGACCAACAACGGGATGCAGCATGCGATGCAACAACCAGAAACCGGTCTTGGAGGAAACGTGGGGCTTAGAGGAGGAAAGCAAGATGGAGCAGATGGACAAGGAAAAGATGATGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

195

Amino Acids

21.04

Weight (kDa)

6.49

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	65 - 108	7.7e-19	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	20, 284, 401
AclWI	GGATC	3 cut(s)	73, 392, 405
AcoI	YGGCCR	1 cut(s)	117
AfaI	GTAC	2 cut(s)	89, 167
AfiI	CCNNNNNNNGG	6 cut(s)	239, 290, 342, 394, 477, 509
AgeI	ACCGGT	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	5 cut(s)	109, 173, 260, 309, 431
AluI	AGCT	5 cut(s)	109, 173, 260, 309, 431
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	3 cut(s)	73, 392, 405
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	8 cut(s)	4, 7, 10, 203, 266, 409, 412, 484
AsiGI	ACCGGT	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	242, 362
AsuHPI	GGTGA	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	242, 362
BalI	TGGCCA	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	397
BbvI	GCAGC	8 cut(s)	16, 19, 22, 190, 253, 421, 424, 496
BccI	CCATC	7 cut(s)	28, 128, 259, 268, 545, 554, 572
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	2 cut(s)	255, 339
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	8 cut(s)	5, 8, 11, 204, 267, 410, 413, 485
BlsI	GCNGC	8 cut(s)	6, 9, 12, 205, 268, 411, 414, 486
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	2 cut(s)	242, 362
BmgT120I	GGNCC	2 cut(s)	242, 362
BmiI	GGNNCC	3 cut(s)	39, 363, 399
BmrFI	CCNGG	1 cut(s)	240
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	5 cut(s)	205, 285, 341, 471, 483
BmuI	ACTGGG	1 cut(s)	157
BpmI	CTGGAG	2 cut(s)	164, 371
BsaJI	CCNNGG	1 cut(s)	356
BsaWI	WCCGGW	1 cut(s)	509
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	6 cut(s)	239, 290, 342, 394, 477, 509
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	163, 388
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	3 cut(s)	300, 332, 486
BseLI	CCNNNNNNNGG	6 cut(s)	239, 290, 342, 394, 477, 509
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	163, 388
BseRI	GAGGAG	1 cut(s)	552
BseXI	GCAGC	8 cut(s)	16, 19, 22, 190, 253, 421, 424, 496
BshFI	GGCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	510
BslI	CCNNNNNNNGG	6 cut(s)	239, 290, 342, 394, 477, 509
BsmAI	GTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	78, 397
BspACI	CCGC	3 cut(s)	20, 284, 401
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	3 cut(s)	39, 363, 399
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	3 cut(s)	73, 392, 405
BspQI	GCTCTTC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	163, 388
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	2 cut(s)	78, 397
BssT1I	CCWWGG	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	372
Bst6I	CTCTTC	1 cut(s)	180
BstAPI	GCANNNNNTGC	3 cut(s)	338, 433, 493
BstC8I	GCNNGC	2 cut(s)	429, 489
BstDEI	CTNAG	2 cut(s)	153, 533
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	3 cut(s)	300, 332, 486
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	81, 400
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	2 cut(s)	78, 397
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	2 cut(s)	255, 339
BstV1I	GCAGC	8 cut(s)	16, 19, 22, 190, 253, 421, 424, 496
BstX2I	RGATCY	2 cut(s)	78, 397
BstYI	RGATCY	2 cut(s)	78, 397
BsuRI	GGCC	1 cut(s)	119
BtgZI	GCGATG	1 cut(s)	506
BtsCI	GGATG	3 cut(s)	300, 332, 486
Cac8I	GCNNGC	2 cut(s)	429, 489
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	242, 362
Csp6I	GTAC	2 cut(s)	88, 166
CspAI	ACCGGT	1 cut(s)	509
CviAII	CATG	4 cut(s)	124, 316, 445, 488
CviJI	RGCY	8 cut(s)	109, 119, 173, 260, 309, 381, 431, 532
CviKI_1	RGCY	8 cut(s)	109, 119, 173, 260, 309, 381, 431, 532
CviQI	GTAC	2 cut(s)	88, 166
DdeI	CTNAG	2 cut(s)	153, 533
DpnI	GATC	2 cut(s)	80, 399
DpnII	GATC	2 cut(s)	78, 397
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	356
Eco47I	GGWCC	2 cut(s)	242, 362
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoO109I	RGGNCCY	2 cut(s)	242, 362
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	356
FaeI	CATG	4 cut(s)	127, 319, 448, 491
FaiI	YATR	7 cut(s)	116, 125, 317, 434, 446, 467, 489
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FatI	CATG	4 cut(s)	123, 315, 444, 487
Fnu4HI	GCNGC	8 cut(s)	5, 8, 11, 204, 267, 410, 413, 485
FokI	GGATG	3 cut(s)	307, 319, 493
Fsp4HI	GCNGC	8 cut(s)	5, 8, 11, 204, 267, 410, 413, 485
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	8 cut(s)	5, 8, 11, 204, 267, 410, 413, 485
GsuI	CTGGAG	2 cut(s)	164, 371
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	510
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	4 cut(s)	127, 319, 448, 491
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	46, 136
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	1 cut(s)	240
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	2 cut(s)	181, 395
Hpy8I	GTNNAC	1 cut(s)	146
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	8 cut(s)	4, 206, 298, 319, 341, 436, 484, 496
HpyF3I	CTNAG	2 cut(s)	153, 533
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	4 cut(s)	127, 319, 448, 491
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	78, 397
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	358, 554
Lsp1109I	GCAGC	8 cut(s)	16, 19, 22, 190, 253, 421, 424, 496
LweI	GCATC	5 cut(s)	205, 285, 341, 471, 483
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	525
MalI	GATC	2 cut(s)	80, 399
MboI	GATC	2 cut(s)	78, 397
MboII	GAAGA	2 cut(s)	167, 196
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	2 cut(s)	78, 397
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	1 cut(s)	207
MluNI	TGGCCA	1 cut(s)	119
MnlI	CCTC	3 cut(s)	512, 530, 533
Mox20I	TGGCCA	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	240
NdeII	GATC	2 cut(s)	78, 397
NlaIII	CATG	4 cut(s)	127, 319, 448, 491
NlaIV	GGNNCC	3 cut(s)	39, 363, 399
NspI	RCATGY	1 cut(s)	491
PaeI	GCATGC	1 cut(s)	491
PciSI	GCTCTTC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	46, 136
PinAI	ACCGGT	1 cut(s)	509
PkrI	GCNGC	8 cut(s)	6, 9, 12, 205, 268, 411, 414, 486
PpuMI	RGGWCCY	2 cut(s)	242, 362
Psp5II	RGGWCCY	2 cut(s)	242, 362
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	39, 363, 399
PspPI	GGNCC	2 cut(s)	242, 362
PspPPI	RGGWCCY	2 cut(s)	242, 362
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	78, 397
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	89, 167
RsaNI	GTAC	2 cut(s)	88, 166
SapI	GCTCTTC	1 cut(s)	180
SatI	GCNGC	8 cut(s)	5, 8, 11, 204, 267, 410, 413, 485
Sau3AI	GATC	2 cut(s)	78, 397
Sau96I	GGNCC	2 cut(s)	242, 362
SbfI	CCTGCAGG	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	240
SdaI	CCTGCAGG	1 cut(s)	343
SfaNI	GCATC	5 cut(s)	205, 285, 341, 471, 483
SfcI	CTRYAG	2 cut(s)	255, 339
SinI	GGWCC	2 cut(s)	242, 362
SphI	GCATGC	1 cut(s)	491
Sse8387I	CCTGCAGG	1 cut(s)	343
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	3 cut(s)	20, 284, 401
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	46, 136
TseI	GCWGC	8 cut(s)	4, 7, 10, 203, 266, 409, 412, 484
TspDTI	ATGAA	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	242, 362
XagI	CCTNNNNNAGG	1 cut(s)	237
XceI	RCATGY	1 cut(s)	491
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.