Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

17657103 .. 17657625

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTATTTAGCAGCAATTGCCGATGCGCAACCACAGGCACCAGCTGCGCCTCCCCAGATGGCCCCACATCCTGCTATGCAACAGGCGGGGTATTACATGCAACATCCTCAGGCAGCAGCAATGGCTCAGCAACAGGGTATTTTCTCCCCGAAGATGCCGATGCAGTTCAATAACATGCATCAAATGAACGATCCACAGTTGCACCAACAAGCCATGCAAGGGCAAATGGGAATGAGACCTGGAGGGCCTAATGGCATGCCTTCCATGCTTCATACTGAGGCCACACATGGTGGTGGTAGTGGTGGCCCAAATTCTGCTGGAGGCCCAAATGATGGGCGTGGAGGAAGCAAGCAAGATGCCGCTGAGTCTGGGGCAGGTGGTGATGGCCAGGGGACCTCAGCCGGTGGGCATGGACATGGTGATGGAGAGGATGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

147

Amino Acids

14.77

Weight (kDa)

5.8

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	365
Acc16I	TGCGCA	1 cut(s)	27
Acc36I	ACCTGC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	37
AccB7I	CCANNNNNTGG	1 cut(s)	332
AciI	CCGC	2 cut(s)	86, 360
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	310
AdeI	CACNNNGTG	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	219, 332
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	238, 387
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	6 cut(s)	60, 245, 279, 304, 322, 385
ApeKI	GCWGC	4 cut(s)	11, 44, 113, 116
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	2 cut(s)	28, 49
AspS9I	GGNCC	5 cut(s)	61, 245, 305, 323, 393
AsuHPI	GGTGA	2 cut(s)	392, 431
AvaII	GGWCC	1 cut(s)	393
AxyI	CCTNAGG	1 cut(s)	108
BalI	TGGCCA	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	37
BbvCI	CCTCAGC	1 cut(s)	397
BbvI	GCAGC	4 cut(s)	23, 31, 125, 128
BccI	CCATC	5 cut(s)	52, 326, 377, 416, 425
BciT130I	CCWGG	2 cut(s)	240, 389
BcoDI	GTCTC	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	5 cut(s)	12, 45, 114, 117, 360
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	5 cut(s)	13, 46, 115, 118, 361
Bme1390I	CCNGG	2 cut(s)	240, 389
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	5 cut(s)	61, 245, 305, 323, 393
BmiI	GGNNCC	3 cut(s)	39, 63, 394
BmrFI	CCNGG	2 cut(s)	240, 389
BmsI	GCATC	5 cut(s)	13, 144, 150, 187, 346
BpmI	CTGGAG	2 cut(s)	261, 339
Bpu10I	CCTNAGC	1 cut(s)	397
Bpu1102I	GCTNAGC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 332
Bse118I	RCCGGY	1 cut(s)	401
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	240, 389
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	3 cut(s)	67, 103, 436
BseLI	CCNNNNNNNGG	2 cut(s)	219, 332
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	5 cut(s)	122, 140, 267, 354, 411
BseXI	GCAGC	4 cut(s)	23, 31, 125, 128
BshFI	GGCC	6 cut(s)	62, 247, 281, 306, 324, 387
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	219, 332
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	6 cut(s)	62, 247, 281, 306, 324, 387
Bso31I	GGTCTC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	190
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	86, 360
BspANI	GGCC	6 cut(s)	62, 247, 281, 306, 324, 387
BspCNI	CTCAG	5 cut(s)	121, 139, 268, 355, 410
BspLI	GGNNCC	3 cut(s)	39, 63, 394
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	240, 389
Bst4CI	ACNGT	1 cut(s)	198
BstAPI	GCANNNNNTGC	2 cut(s)	17, 44
BstC8I	GCNNGC	2 cut(s)	257, 350
BstDEI	CTNAG	5 cut(s)	108, 126, 276, 363, 397
BstF5I	GGATG	3 cut(s)	67, 103, 436
BstHHI	GCGC	2 cut(s)	28, 49
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 44, 122, 265
BstNI	CCWGG	2 cut(s)	240, 389
BstNSI	RCATGY	3 cut(s)	100, 178, 259
BstSCI	CCNGG	2 cut(s)	238, 387
BstV1I	GCAGC	4 cut(s)	23, 31, 125, 128
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	6 cut(s)	62, 247, 281, 306, 324, 387
BtsCI	GGATG	3 cut(s)	67, 103, 436
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	257, 350
CfoI	GCGC	2 cut(s)	28, 49
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	5 cut(s)	61, 245, 305, 323, 393
CviAII	CATG	8 cut(s)	97, 175, 214, 256, 265, 287, 410, 416
DdeI	CTNAG	5 cut(s)	108, 126, 276, 363, 397
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DraIII	CACNNNGTG	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	385
Eco31I	GGTCTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	393
Eco81I	CCTNAGG	1 cut(s)	108
EcoO109I	RGGNCCY	2 cut(s)	245, 393
EcoRII	CCWGG	2 cut(s)	238, 387
EcoT22I	ATGCAT	1 cut(s)	180
FaeI	CATG	8 cut(s)	100, 178, 217, 259, 268, 290, 413, 419
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	8 cut(s)	96, 174, 213, 255, 264, 286, 409, 415
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	5 cut(s)	12, 45, 114, 117, 360
FokI	GGATG	2 cut(s)	54, 90
Fsp4HI	GCNGC	5 cut(s)	12, 45, 114, 117, 360
FspI	TGCGCA	1 cut(s)	27
GlaI	GCGC	2 cut(s)	27, 48
GluI	GCNGC	5 cut(s)	12, 45, 114, 117, 360
GsuI	CTGGAG	2 cut(s)	261, 339
HaeIII	GGCC	6 cut(s)	62, 247, 281, 306, 324, 387
HapII	CCGG	1 cut(s)	402
HhaI	GCGC	2 cut(s)	28, 49
Hin1II	CATG	8 cut(s)	100, 178, 217, 259, 268, 290, 413, 419
Hin6I	GCGC	2 cut(s)	26, 47
HinP1I	GCGC	2 cut(s)	26, 47
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	2 cut(s)	392, 431
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	6 cut(s)	79, 100, 163, 178, 202, 217
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 44, 122, 265
HpyF3I	CTNAG	5 cut(s)	108, 126, 276, 363, 397
Hsp92II	CATG	8 cut(s)	100, 178, 217, 259, 268, 290, 413, 419
HspAI	GCGC	2 cut(s)	26, 47
Kzo9I	GATC	1 cut(s)	190
Lsp1109I	GCAGC	4 cut(s)	23, 31, 125, 128
LweI	GCATC	5 cut(s)	13, 144, 150, 187, 346
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	163
MfeI	CAATTG	1 cut(s)	15
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	2 cut(s)	15, 310
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	8 cut(s)	60, 117, 236, 271, 314, 335, 406, 421
Mox20I	TGGCCA	1 cut(s)	387
Mph1103I	ATGCAT	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	387
MslI	CAYNNNNRTG	3 cut(s)	291, 414, 420
Msp20I	TGGCCA	1 cut(s)	387
MspA1I	CMGCKG	2 cut(s)	44, 362
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	240, 389
MunI	CAATTG	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	240, 389
MwoI	GCNNNNNNNGC	4 cut(s)	17, 44, 122, 265
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	8 cut(s)	100, 178, 217, 259, 268, 290, 413, 419
NlaIV	GGNNCC	3 cut(s)	39, 63, 394
NsbI	TGCGCA	1 cut(s)	27
NsiI	ATGCAT	1 cut(s)	180
NspI	RCATGY	3 cut(s)	100, 178, 259
PaeI	GCATGC	1 cut(s)	259
PaqCI	CACCTGC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	332
PkrI	GCNGC	5 cut(s)	13, 46, 115, 118, 361
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	238, 387
PspGI	CCWGG	2 cut(s)	238, 387
PspN4I	GGNNCC	3 cut(s)	39, 63, 394
PspPI	GGNCC	5 cut(s)	61, 245, 305, 323, 393
PspPPI	RGGWCCY	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	44
RseI	CAYNNNNRTG	3 cut(s)	291, 414, 420
SatI	GCNGC	5 cut(s)	12, 45, 114, 117, 360
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	5 cut(s)	61, 245, 305, 323, 393
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	240, 389
SetI	ASST	4 cut(s)	46, 241, 379, 398
SfaNI	GCATC	5 cut(s)	13, 144, 150, 187, 346
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	3 cut(s)	291, 414, 420
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	15, 310
SsiI	CCGC	2 cut(s)	86, 360
StyD4I	CCNGG	2 cut(s)	238, 387
TaaI	ACNGT	1 cut(s)	198
TasI	AATT	2 cut(s)	15, 310
TauI	GCSGC	1 cut(s)	362
TseI	GCWGC	4 cut(s)	11, 44, 113, 116
TspDTI	ATGAA	2 cut(s)	200, 260
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	3 cut(s)	100, 178, 259
Zsp2I	ATGCAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.