Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

23327157 .. 23330843

Gene Structure 3687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G195600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCAGCAGCCACAGCAAATGATCCCTGTGATGCCTACTTCATTTCCACCCACTAACATCACCACCGAGCAAATTCAGAAGTACCTTGACGAGAACAAAAAATTGATTCTGGCAATATTGGATAATCAAAACCTTGGAAAACTTGCTGAGTGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATCTGATGTATTTAGCAGCTATTGCTGATGCACAACCACAGGCACCAACAGTGCCTGCTCAGATGGCCCCACATCCTGCTATGCAACAAGCAGGATATTACATGCAACATCCTCAGGCAGCAGCAATGGCTCAGCAACAGGGTATTTTCCCCCCAAAGATGCCATTGCAGTTCAATAACCCGCACCAAATGCATGATGCAGCACAGCAGCTACACCAGCAGCACCAACAAGCCATGCAAGGGCAAATGGGAATGAGAGCTGGAGGGGCCAATGGCATGCCTTCCATGCATCATACTGAAGCCACACTTGGTGGTGGTAGTGGTGGCCCAACTTCAGGTGGAGGGGGTCCAAACGATGGGCGTGGAGGAAGCAAGCAAGACAACTCAGAGGCTGGGACAGGTGGTGATGGCCAGGGGAGCTCAGCCGGCGGGCATGGCAATGGTGATGGAGAAGATGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

215

Amino Acids

22.46

Weight (kDa)

5.93

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccB7I	CCANNNNNTGG	1 cut(s)	536
AciI	CCGC	2 cut(s)	362, 609
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	2 cut(s)	498, 498
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	2 cut(s)	83, 161
AfiI	CCNNNNNNNGG	3 cut(s)	420, 515, 536
AgsI	TTSAA	2 cut(s)	176, 355
AjnI	CCWGG	1 cut(s)	591
AjuI	GAANNNNNNNTTGG	4 cut(s)	156, 188, 471, 503
AluBI	AGCT	6 cut(s)	167, 172, 200, 391, 440, 600
AluI	AGCT	6 cut(s)	167, 172, 200, 391, 440, 600
Alw21I	GWGCWC	1 cut(s)	602
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	2 cut(s)	236, 572
AoxI	GGCC	4 cut(s)	246, 447, 505, 589
ApeKI	GCWGC	8 cut(s)	4, 7, 197, 299, 302, 380, 388, 400
ApoI	RAATTY	1 cut(s)	72
AspS9I	GGNCC	4 cut(s)	247, 447, 506, 527
AsuHPI	GGTGA	3 cut(s)	52, 596, 635
AvaII	GGWCC	1 cut(s)	527
AxyI	CCTNAGG	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	591
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	602
BbvI	GCAGC	8 cut(s)	16, 19, 209, 311, 314, 392, 400, 412
BccI	CCATC	5 cut(s)	238, 530, 581, 620, 629
BciT130I	CCWGG	1 cut(s)	593
BisI	GCNGC	8 cut(s)	5, 8, 198, 300, 303, 381, 389, 401
BlpI	GCTNAGC	3 cut(s)	168, 312, 601
BlsI	GCNGC	8 cut(s)	6, 9, 199, 301, 304, 382, 390, 402
Bme1390I	CCNGG	1 cut(s)	593
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	4 cut(s)	247, 447, 506, 527
BmiI	GGNNCC	4 cut(s)	225, 249, 448, 528
BmrFI	CCNGG	1 cut(s)	593
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	5 cut(s)	21, 199, 330, 367, 478
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	462
Bpu1102I	GCTNAGC	3 cut(s)	168, 312, 601
BsaJI	CCNNGG	2 cut(s)	133, 592
Bsc4I	CCNNNNNNNGG	3 cut(s)	420, 515, 536
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	1 cut(s)	157
Bse21I	CCTNAGG	1 cut(s)	294
Bse3DI	GCAATG	3 cut(s)	312, 344, 625
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	133, 592
BseGI	GGATG	2 cut(s)	253, 289
BseLI	CCNNNNNNNGG	3 cut(s)	420, 515, 536
BseMI	GCAATG	3 cut(s)	312, 344, 625
BseMII	CTCAG	7 cut(s)	138, 182, 254, 308, 326, 579, 615
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	8 cut(s)	16, 19, 209, 311, 314, 392, 400, 412
BseYI	CCCAGC	1 cut(s)	572
BshFI	GGCC	4 cut(s)	248, 449, 507, 591
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	602
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	3 cut(s)	420, 515, 536
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	4 cut(s)	248, 449, 507, 591
Bsp1286I	GDGCHC	2 cut(s)	157, 602
Bsp143I	GATC	1 cut(s)	21
Bsp1720I	GCTNAGC	3 cut(s)	168, 312, 601
BspACI	CCGC	2 cut(s)	362, 609
BspANI	GGCC	4 cut(s)	248, 449, 507, 591
BspCNI	CTCAG	7 cut(s)	139, 181, 253, 307, 325, 578, 614
BspLI	GGNNCC	4 cut(s)	225, 249, 448, 528
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	223
BsrDI	GCAATG	3 cut(s)	312, 344, 625
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	133, 592
BssMI	GATC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	1 cut(s)	232
BstAPI	GCANNNNNTGC	2 cut(s)	203, 370
BstC8I	GCNNGC	5 cut(s)	237, 458, 554, 607, 611
BstDEI	CTNAG	7 cut(s)	147, 168, 240, 294, 312, 565, 601
BstF5I	GGATG	2 cut(s)	253, 289
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	2 cut(s)	286, 460
BstSCI	CCNGG	1 cut(s)	591
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	8 cut(s)	16, 19, 209, 311, 314, 392, 400, 412
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	4 cut(s)	248, 449, 507, 591
BtsCI	GGATG	2 cut(s)	253, 289
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	5 cut(s)	237, 458, 554, 607, 611
CaiI	CAGNNNCTG	2 cut(s)	236, 572
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	4 cut(s)	247, 447, 506, 527
Csp6I	GTAC	2 cut(s)	82, 160
CviAII	CATG	6 cut(s)	283, 374, 415, 457, 466, 614
CviQI	GTAC	2 cut(s)	82, 160
DdeI	CTNAG	7 cut(s)	147, 168, 240, 294, 312, 565, 601
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
DraIII	CACNNNGTG	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	589
Ecl136II	GAGCTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	527
Eco53kI	GAGCTC	1 cut(s)	600
Eco57I	CTGAAG	2 cut(s)	498, 498
Eco81I	CCTNAGG	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	133
EcoT22I	ATGCAT	2 cut(s)	375, 471
EcoT38I	GRGCYC	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	6 cut(s)	286, 377, 418, 460, 469, 617
FaiI	YATR	8 cut(s)	263, 284, 375, 416, 458, 467, 474, 615
FalI	AAGNNNNNCTT	4 cut(s)	156, 188, 471, 503
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	6 cut(s)	282, 373, 414, 456, 465, 613
FauI	CCCGC	2 cut(s)	369, 602
Fnu4HI	GCNGC	8 cut(s)	5, 8, 198, 300, 303, 381, 389, 401
FokI	GGATG	2 cut(s)	240, 276
FriOI	GRGCYC	1 cut(s)	602
Fsp4HI	GCNGC	8 cut(s)	5, 8, 198, 300, 303, 381, 389, 401
GluI	GCNGC	8 cut(s)	5, 8, 198, 300, 303, 381, 389, 401
GsaI	CCCAGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	4 cut(s)	248, 449, 507, 591
HapII	CCGG	1 cut(s)	606
Hin1II	CATG	6 cut(s)	286, 377, 418, 460, 469, 617
HinfI	GANTC	2 cut(s)	106, 181
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	3 cut(s)	52, 596, 635
Hpy188I	TCNGA	4 cut(s)	78, 186, 243, 568
HpyAV	CCTTC	1 cut(s)	471
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	9 cut(s)	4, 212, 265, 286, 349, 373, 380, 418, 469
HpyF3I	CTNAG	7 cut(s)	147, 168, 240, 294, 312, 565, 601
Hsp92II	CATG	6 cut(s)	286, 377, 418, 460, 469, 617
KroI	GCCGGC	1 cut(s)	605
KroNI	GCCGGC	1 cut(s)	607
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	597
Lsp1109I	GCAGC	8 cut(s)	16, 19, 209, 311, 314, 392, 400, 412
LweI	GCATC	5 cut(s)	21, 199, 330, 367, 478
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	1 cut(s)	644
MhlI	GDGCHC	2 cut(s)	157, 602
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	2 cut(s)	72, 101
MluNI	TGGCCA	1 cut(s)	591
MnlI	CCTC	5 cut(s)	303, 437, 515, 539, 562
Mox20I	TGGCCA	1 cut(s)	591
Mph1103I	ATGCAT	2 cut(s)	375, 471
MroNI	GCCGGC	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	591
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	593
MvaI	CCWGG	1 cut(s)	593
NaeI	GCCGGC	1 cut(s)	607
NdeII	GATC	1 cut(s)	21
NgoMIV	GCCGGC	1 cut(s)	605
NlaIII	CATG	6 cut(s)	286, 377, 418, 460, 469, 617
NlaIV	GGNNCC	4 cut(s)	225, 249, 448, 528
NsiI	ATGCAT	2 cut(s)	375, 471
NspI	RCATGY	2 cut(s)	286, 460
PaeI	GCATGC	1 cut(s)	460
PdiI	GCCGGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	106, 181
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	8 cut(s)	6, 9, 199, 301, 304, 382, 390, 402
Psp124BI	GAGCTC	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	591
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	4 cut(s)	225, 249, 448, 528
PspPI	GGNCC	4 cut(s)	247, 447, 506, 527
PstNI	CAGNNNCTG	2 cut(s)	236, 572
RsaI	GTAC	2 cut(s)	83, 161
RsaNI	GTAC	2 cut(s)	82, 160
RseI	CAYNNNNRTG	1 cut(s)	618
SacI	GAGCTC	1 cut(s)	602
SatI	GCNGC	8 cut(s)	5, 8, 198, 300, 303, 381, 389, 401
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	4 cut(s)	247, 447, 506, 527
ScrFI	CCNGG	1 cut(s)	593
SduI	GDGCHC	2 cut(s)	157, 602
SfaNI	GCATC	5 cut(s)	21, 199, 330, 367, 478
SinI	GGWCC	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	618
SphI	GCATGC	1 cut(s)	460
Sse9I	AATT	2 cut(s)	72, 101
SsiI	CCGC	2 cut(s)	362, 609
SspI	AATATT	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	232
TasI	AATT	2 cut(s)	72, 101
TfiI	GAWTC	2 cut(s)	106, 181
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	8 cut(s)	4, 7, 197, 299, 302, 380, 388, 400
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	237
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	72
XceI	RCATGY	2 cut(s)	286, 460
Zsp2I	ATGCAT	2 cut(s)	375, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.