Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

14800001 .. 14803862

Gene Structure 3862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17400.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCAGCAGCAGCCACAGCAGATGATGCCCAACATGACTTCGCTTCCTCCCAATACCATCACCACCGAGCAAATTCAGAAGTGCCTTGATGAGAACAAAAAGTTGATTCTAGCAATATTGGACAATCAAAACCTTGGAAAACTTGCTGAGTGTGCCCAGTACCAAACTCAGCTTCAAAAGAATCTCATGTATTTAGCAGCAATTGCTGATGCACAACCACAACCACAACCACAAGCACCAGCAATGCCGGCCCAGCTGGCCCCGCATCCTGCGATGCAACAAGCTGGATATTACATGCAGCATCCTCAGGCTGCAGCAGCAATGGCTCAGCAACAGGGTCTTTTCCCTCAAAAGATGCAAATGCAGTTTAATAGCCCACAACAAATGCACGAGATGCAGCAGCAGTTACACCAACAGGCCATGCATGGCCAGATGGGGATGAGACCTGGAGGGGCCAATGGGATGCCTTCAATGCATCATACTGAGAACACCCATGGAGGAAGCAAGCAAGACAACTCAGAGGCTGGGGCAGGTGGTGATGGCCAGGGGAACTCAGCCGGTGGCCACAGAAGTGGCGACGGAGAGGACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

198

Amino Acids

21.44

Weight (kDa)

6.1

Isoelectric Point (pI)

71.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	19 - 77	1.3e-22	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	521
Acc36I	ACCTGC	1 cut(s)	521
AciI	CCGC	1 cut(s)	263
AcoI	YGGCCR	3 cut(s)	427, 541, 562
AcsI	RAATTY	1 cut(s)	72
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	176, 471
AjnI	CCWGG	2 cut(s)	445, 543
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AleI	CACNNNNGTG	1 cut(s)	570
AluBI	AGCT	3 cut(s)	172, 256, 284
AluI	AGCT	3 cut(s)	172, 256, 284
Alw26I	GTCTC	1 cut(s)	436
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	7 cut(s)	249, 258, 417, 427, 453, 541, 562
ApoI	RAATTY	1 cut(s)	72
AspS9I	GGNCC	3 cut(s)	250, 259, 453
AsuHPI	GGTGA	2 cut(s)	52, 548
AxyI	CCTNAGG	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	157
BalI	TGGCCA	3 cut(s)	429, 543, 564
BauI	CACGAG	1 cut(s)	389
BccI	CCATC	3 cut(s)	65, 427, 533
BciT130I	CCWGG	2 cut(s)	447, 545
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	521
BglI	GCCNNNNNGGC	1 cut(s)	257
BlpI	GCTNAGC	1 cut(s)	327
Bme1390I	CCNGG	2 cut(s)	447, 545
BmgT120I	GGNCC	3 cut(s)	250, 259, 453
BmiI	GGNNCC	2 cut(s)	261, 454
BmrFI	CCNGG	2 cut(s)	447, 545
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	9 cut(s)	15, 199, 264, 274, 310, 345, 384, 453, 484
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	133, 493, 544
Bse118I	RCCGGY	2 cut(s)	247, 557
Bse1I	ACTGG	1 cut(s)	157
Bse21I	CCTNAGG	1 cut(s)	306
Bse3DI	GCAATG	2 cut(s)	249, 327
BseBI	CCWGG	2 cut(s)	447, 545
BseDI	CCNNGG	3 cut(s)	133, 493, 544
BseGI	GGATG	4 cut(s)	265, 301, 444, 468
BseMI	GCAATG	2 cut(s)	249, 327
BseMII	CTCAG	7 cut(s)	138, 182, 320, 341, 474, 531, 567
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	157
BseYI	CCCAGC	2 cut(s)	252, 524
BshFI	GGCC	7 cut(s)	251, 260, 419, 429, 455, 543, 564
BsiSI	CCGG	2 cut(s)	248, 558
BsmAI	GTCTC	1 cut(s)	436
BsnI	GGCC	7 cut(s)	251, 260, 419, 429, 455, 543, 564
Bso31I	GGTCTC	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	7 cut(s)	251, 260, 419, 429, 455, 543, 564
BspCNI	CTCAG	7 cut(s)	139, 181, 319, 340, 475, 530, 566
BspLI	GGNNCC	2 cut(s)	261, 454
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	436
BsrDI	GCAATG	2 cut(s)	249, 327
BsrFI	RCCGGY	2 cut(s)	247, 557
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	2 cut(s)	247, 557
BssECI	CCNNGG	3 cut(s)	133, 493, 544
BssSI	CACGAG	1 cut(s)	389
BssT1I	CCWWGG	2 cut(s)	133, 493
Bst2BI	CACGAG	1 cut(s)	389
Bst2UI	CCWGG	2 cut(s)	447, 545
BstAPI	GCANNNNNTGC	3 cut(s)	25, 203, 394
BstC8I	GCNNGC	3 cut(s)	249, 258, 506
BstDEI	CTNAG	7 cut(s)	147, 168, 306, 327, 483, 517, 553
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	4 cut(s)	265, 301, 444, 468
BstMAI	GTCTC	1 cut(s)	436
BstNI	CCWGG	2 cut(s)	447, 545
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	445, 543
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	572
Bsu36I	CCTNAGG	1 cut(s)	306
BsuRI	GGCC	7 cut(s)	251, 260, 419, 429, 455, 543, 564
BtgI	CCRYGG	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	287
BtsCI	GGATG	4 cut(s)	265, 301, 444, 468
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	3 cut(s)	249, 258, 506
CaiI	CAGNNNCTG	1 cut(s)	524
Cfr10I	RCCGGY	2 cut(s)	247, 557
Cfr13I	GGNCC	3 cut(s)	250, 259, 453
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	6 cut(s)	34, 187, 295, 421, 425, 494
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	7 cut(s)	147, 168, 306, 327, 483, 517, 553
EaeI	YGGCCR	3 cut(s)	427, 541, 562
Eco130I	CCWWGG	2 cut(s)	133, 493
Eco31I	GGTCTC	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	306
EcoRII	CCWGG	2 cut(s)	445, 543
EcoT14I	CCWWGG	2 cut(s)	133, 493
EcoT22I	ATGCAT	2 cut(s)	426, 477
ErhI	CCWWGG	2 cut(s)	133, 493
FaeI	CATG	6 cut(s)	37, 190, 298, 424, 428, 497
FaiI	YATR	7 cut(s)	35, 188, 296, 422, 426, 480, 495
FatI	CATG	6 cut(s)	33, 186, 294, 420, 424, 493
FauI	CCCGC	1 cut(s)	270
FokI	GGATG	4 cut(s)	252, 288, 451, 475
FspBI	CTAG	1 cut(s)	110
GsaI	CCCAGC	2 cut(s)	256, 528
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	7 cut(s)	251, 260, 419, 429, 455, 543, 564
HapII	CCGG	2 cut(s)	248, 558
Hin1II	CATG	6 cut(s)	37, 190, 298, 424, 428, 497
HinfI	GANTC	2 cut(s)	106, 181
HpaII	CCGG	2 cut(s)	248, 558
HphI	GGTGA	2 cut(s)	52, 548
Hpy188I	TCNGA	2 cut(s)	78, 520
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	1 cut(s)	477
HpyF3I	CTNAG	7 cut(s)	147, 168, 306, 327, 483, 517, 553
Hsp92II	CATG	6 cut(s)	37, 190, 298, 424, 428, 497
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
LweI	GCATC	9 cut(s)	15, 199, 264, 274, 310, 345, 384, 453, 484
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	405
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	157
MlsI	TGGCCA	3 cut(s)	429, 543, 564
MluCI	AATT	2 cut(s)	72, 201
MluNI	TGGCCA	3 cut(s)	429, 543, 564
MnlI	CCTC	7 cut(s)	57, 315, 357, 443, 491, 514, 577
Mox20I	TGGCCA	3 cut(s)	429, 543, 564
Mph1103I	ATGCAT	2 cut(s)	426, 477
MroNI	GCCGGC	1 cut(s)	247
MscI	TGGCCA	3 cut(s)	429, 543, 564
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	570
Msp20I	TGGCCA	3 cut(s)	429, 543, 564
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	2 cut(s)	248, 558
MspR9I	CCNGG	2 cut(s)	447, 545
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	447, 545
NaeI	GCCGGC	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	493
NgoMIV	GCCGGC	1 cut(s)	247
NlaIII	CATG	6 cut(s)	37, 190, 298, 424, 428, 497
NlaIV	GGNNCC	2 cut(s)	261, 454
NsiI	ATGCAT	2 cut(s)	426, 477
NspI	RCATGY	1 cut(s)	298
OliI	CACNNNNGTG	1 cut(s)	570
PaqCI	CACCTGC	1 cut(s)	521
PdiI	GCCGGC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	106, 181
Psp6I	CCWGG	2 cut(s)	445, 543
PspFI	CCCAGC	2 cut(s)	252, 524
PspGI	CCWGG	2 cut(s)	445, 543
PspN4I	GGNNCC	2 cut(s)	261, 454
PspPI	GGNCC	3 cut(s)	250, 259, 453
PstI	CTGCAG	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	1 cut(s)	369
Sau96I	GGNCC	3 cut(s)	250, 259, 453
ScrFI	CCNGG	2 cut(s)	447, 545
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	6 cut(s)	135, 174, 258, 286, 448, 535
SfaNI	GCATC	9 cut(s)	15, 199, 264, 274, 310, 345, 384, 453, 484
SfcI	CTRYAG	1 cut(s)	312
SfiI	GGCCNNNNNGGCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	570
Sse9I	AATT	2 cut(s)	72, 201
SsiI	CCGC	1 cut(s)	263
SspI	AATATT	1 cut(s)	117
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	445, 543
StyI	CCWWGG	2 cut(s)	133, 493
TasI	AATT	2 cut(s)	72, 201
TfiI	GAWTC	2 cut(s)	106, 181
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TspGWI	ACGGA	1 cut(s)	594
XapI	RAATTY	1 cut(s)	72
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	2 cut(s)	426, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.