Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

39044244 .. 39047260

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG258700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCAGCAGCAGCCGCAGCAAATGATGACCGGGATGCCTTCATTTCCACCCACTAACATCACCACCGAGCAAATTCAGAAGTGCCTTGATGAGAACAAAAAGTTGATTCTAGCAATATTGGACAATCAAAACCTTGGAAAACTTGCTGAGTGTGCCCAGTACCAAACTCAGCTTCAAAAGAATCTTATGTATTTAGCAGCAATTGCTGATGCTCAACCACAACCACAAGCACCAACAATGCCAGCCCAGCAGATGGCCCCGCATCCTGCGATGCAACAAGCGGGATATTACATGCAGCATCCTCAGGCTGCAGCAGCAATGGCTCAGCAACAGGGTCTTTTCCCTCAAAAGATGCAAATGCAGTTCAATAGCCCACATCAAATGCACGAATCACACCAGCAGTTACACCAACAAGCCATGCAAGGCCAGATGGGAATGAGACCTGGAGGGGCCAATGGCATGCCTTCAATGCATCATACTGAGAGCACCCATGGAGGAAGCAAGCAAGACAACTCAGAGGCTGGGACAGGTGGCGATGGCCATGGGAGCTCGGCTGGTGGGCACGGCAATGGTGACGGAGAAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

196

Amino Acids

21.24

Weight (kDa)

6.08

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	19 - 76	7.3e-23	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	3 cut(s)	14, 260, 281
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	72
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	176, 367, 468
AjnI	CCWGG	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	2 cut(s)	172, 549
AluI	AGCT	2 cut(s)	172, 549
Alw21I	GWGCWC	2 cut(s)	488, 551
Alw26I	GTCTC	1 cut(s)	433
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	4 cut(s)	255, 424, 450, 538
ApeKI	GCWGC	9 cut(s)	4, 7, 10, 16, 197, 295, 308, 311, 314
ApoI	RAATTY	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	256, 450
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	52, 584
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	2 cut(s)	157, 564
BalI	TGGCCA	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	551
Bbv12I	GWGCWC	2 cut(s)	488, 551
BbvI	GCAGC	9 cut(s)	16, 19, 22, 28, 209, 295, 307, 323, 326
BccI	CCATC	3 cut(s)	247, 424, 530
BceAI	ACGGC	1 cut(s)	580
BciT130I	CCWGG	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	309
BlpI	GCTNAGC	1 cut(s)	324
Bme1390I	CCNGG	2 cut(s)	31, 444
BmgT120I	GGNCC	2 cut(s)	256, 450
BmiI	GGNNCC	2 cut(s)	258, 451
BmrFI	CCNGG	2 cut(s)	31, 444
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	7 cut(s)	24, 199, 261, 271, 307, 342, 481
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	3 cut(s)	133, 490, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	157
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	2 cut(s)	324, 574
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	133, 490, 541
BseGI	GGATG	3 cut(s)	39, 262, 298
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	2 cut(s)	324, 574
BseMII	CTCAG	6 cut(s)	138, 182, 317, 338, 471, 528
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	2 cut(s)	157, 564
BseXI	GCAGC	9 cut(s)	16, 19, 22, 28, 209, 295, 307, 323, 326
BseYI	CCCAGC	2 cut(s)	246, 521
BshFI	GGCC	4 cut(s)	257, 426, 452, 540
BsiHKAI	GWGCWC	2 cut(s)	488, 551
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	538
BsnI	GGCC	4 cut(s)	257, 426, 452, 540
Bso31I	GGTCTC	1 cut(s)	433
Bsp1286I	GDGCHC	4 cut(s)	157, 488, 551, 564
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	2 cut(s)	490, 541
BspACI	CCGC	3 cut(s)	14, 260, 281
BspANI	GGCC	4 cut(s)	257, 426, 452, 540
BspCNI	CTCAG	6 cut(s)	139, 181, 316, 337, 472, 527
BspLI	GGNNCC	2 cut(s)	258, 451
BspMAI	CTGCAG	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	2 cut(s)	324, 574
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	3 cut(s)	133, 490, 541
BssT1I	CCWWGG	3 cut(s)	133, 490, 541
Bst2UI	CCWGG	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	243, 461, 503
BstDEI	CTNAG	6 cut(s)	147, 168, 303, 324, 480, 514
BstDSI	CCRYGG	2 cut(s)	490, 541
BstF5I	GGATG	3 cut(s)	39, 262, 298
BstMAI	GTCTC	1 cut(s)	433
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	2 cut(s)	295, 463
BstSCI	CCNGG	2 cut(s)	29, 442
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	2 cut(s)	157, 564
BstV1I	GCAGC	9 cut(s)	16, 19, 22, 28, 209, 295, 307, 323, 326
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	257, 426, 452, 540
BtgI	CCRYGG	2 cut(s)	490, 541
BtgZI	GCGATG	2 cut(s)	284, 549
BtsCI	GGATG	3 cut(s)	39, 262, 298
Cac8I	GCNNGC	3 cut(s)	243, 461, 503
CaiI	CAGNNNCTG	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	256, 450
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	5 cut(s)	292, 418, 460, 491, 542
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	6 cut(s)	147, 168, 303, 324, 480, 514
EaeI	YGGCCR	1 cut(s)	538
Ecl136II	GAGCTC	1 cut(s)	549
Eco130I	CCWWGG	3 cut(s)	133, 490, 541
Eco24I	GRGCYC	1 cut(s)	551
Eco31I	GGTCTC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	549
Eco81I	CCTNAGG	1 cut(s)	303
EcoICRI	GAGCTC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	3 cut(s)	133, 490, 541
EcoT22I	ATGCAT	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	551
ErhI	CCWWGG	3 cut(s)	133, 490, 541
FaeI	CATG	5 cut(s)	295, 421, 463, 494, 545
FaiI	YATR	7 cut(s)	188, 293, 419, 461, 477, 492, 543
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	5 cut(s)	291, 417, 459, 490, 541
FauI	CCCGC	2 cut(s)	267, 274
FokI	GGATG	3 cut(s)	46, 249, 285
FriOI	GRGCYC	1 cut(s)	551
FspBI	CTAG	1 cut(s)	110
GsaI	CCCAGC	2 cut(s)	250, 525
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	4 cut(s)	257, 426, 452, 540
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	5 cut(s)	295, 421, 463, 494, 545
HinfI	GANTC	3 cut(s)	106, 181, 389
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	52, 584
Hpy188I	TCNGA	2 cut(s)	78, 517
HpyAV	CCTTC	2 cut(s)	48, 474
HpyCH4V	TGCA	9 cut(s)	4, 274, 295, 311, 355, 361, 385, 421, 472
HpyF3I	CTNAG	6 cut(s)	147, 168, 303, 324, 480, 514
Hsp92II	CATG	5 cut(s)	295, 421, 463, 494, 545
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	9 cut(s)	16, 19, 22, 28, 209, 295, 307, 323, 326
LweI	GCATC	7 cut(s)	24, 199, 261, 271, 307, 342, 481
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	402, 572
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	4 cut(s)	157, 488, 551, 564
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	2 cut(s)	72, 201
MluNI	TGGCCA	1 cut(s)	540
MnlI	CCTC	5 cut(s)	312, 354, 440, 488, 511
Mox20I	TGGCCA	1 cut(s)	540
Mph1103I	ATGCAT	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	540
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	31, 444
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	444
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	2 cut(s)	490, 541
NlaIII	CATG	5 cut(s)	295, 421, 463, 494, 545
NlaIV	GGNNCC	2 cut(s)	258, 451
NmeAIII	GCCGAG	1 cut(s)	530
NmuCI	GTSAC	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	474
NspI	RCATGY	2 cut(s)	295, 463
PaeI	GCATGC	1 cut(s)	463
PfeI	GAWTC	3 cut(s)	106, 181, 389
PflMI	CCANNNNNTGG	1 cut(s)	253
Psp124BI	GAGCTC	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	442
PspFI	CCCAGC	2 cut(s)	246, 521
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	258, 451
PspPI	GGNCC	2 cut(s)	256, 450
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	551
Sau96I	GGNCC	2 cut(s)	256, 450
ScrFI	CCNGG	2 cut(s)	31, 444
SduI	GDGCHC	4 cut(s)	157, 488, 551, 564
SetI	ASST	5 cut(s)	135, 174, 445, 532, 551
SfaNI	GCATC	7 cut(s)	24, 199, 261, 271, 307, 342, 481
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	567
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	2 cut(s)	72, 201
SsiI	CCGC	3 cut(s)	14, 260, 281
SspI	AATATT	1 cut(s)	117
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	551
StyD4I	CCNGG	2 cut(s)	29, 442
StyI	CCWWGG	3 cut(s)	133, 490, 541
TasI	AATT	2 cut(s)	72, 201
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	3 cut(s)	106, 181, 389
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	9 cut(s)	4, 7, 10, 16, 197, 295, 308, 311, 314
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	591
Van91I	CCANNNNNTGG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	72
XceI	RCATGY	2 cut(s)	295, 463
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.