Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

11992294 .. 11994792

Gene Structure 2499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCAGCAGCCACCGCAAATGATCCCCTTCATGCCTTCATTTCCTCCCACTAACATCACCACCGAGCAAATTCAGAGGTATCTTGATGACAACAAAACGTTGATTATGGCAATATTGGATAATCAAAATCTTGGAAAACTTGCCGAGTGTGCTCCGTACCAAGCTCAGCTTCAAAAGAATATGATATATTTAGCAGCAATTGCCGATGCGCAACCACTGTCACCAGCAGTGCCTGCCCAGATGGCCCCACATCCTGCTATGCAACAGGCGGGATATTACATGCAACATGCCCAGGCAGCAGCGATGGCTCAGCAACAAGGTATTTTCCCCCCAAAAATGCCGATGCAGTTCAATAACATGCATCAAATGCACGACCCGCAGCAGCAGCAGCAGCTACATCAGCAGAACCAACAAGCCATGCAAGGGCAAATGGGAATGAGACCCAGGGGGGCCAACGGCATGCCTTCCATGCATTATACTGAGGGCTCATTTGGTGGTGGTAGTGGCGGCCCAAACTCAGCGGGAGGCCCAAATGATGGGTGTGGAGGAAGCAAGCAAGATGCCTCGGATGCTAGGGTAGGTGGTGATGGCCAGGGGAGCTCAGCTGGTGGGCATGGCACCGGTGATGGAGATGACGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

215

Amino Acids

22.75

Weight (kDa)

5.69

Isoelectric Point (pI)

66.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	536
AciI	CCGC	5 cut(s)	14, 269, 377, 507, 521
AclI	AACGTT	1 cut(s)	98
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	69
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	423, 536
AgeI	ACCGGT	1 cut(s)	620
AgsI	TTSAA	2 cut(s)	173, 352
AjnI	CCWGG	3 cut(s)	291, 443, 591
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	5 cut(s)	164, 169, 394, 600, 605
AluI	AGCT	5 cut(s)	164, 169, 394, 600, 605
Alw21I	GWGCWC	2 cut(s)	154, 602
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	5 cut(s)	243, 450, 508, 526, 589
ApoI	RAATTY	1 cut(s)	69
AsiGI	ACCGGT	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	4 cut(s)	244, 450, 509, 527
AsuHPI	GGTGA	4 cut(s)	49, 213, 596, 635
BalI	TGGCCA	1 cut(s)	591
BanI	GGYRCC	1 cut(s)	617
BanII	GRGCYC	2 cut(s)	488, 602
Bbv12I	GWGCWC	2 cut(s)	154, 602
BccI	CCATC	5 cut(s)	235, 298, 530, 581, 620
BceAI	ACGGC	1 cut(s)	472
BciT130I	CCWGG	3 cut(s)	293, 445, 593
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	573
BglI	GCCNNNNNGGC	1 cut(s)	242
BlpI	GCTNAGC	3 cut(s)	165, 309, 601
Bme1390I	CCNGG	3 cut(s)	293, 445, 593
BmgT120I	GGNCC	4 cut(s)	244, 450, 509, 527
BmiI	GGNNCC	3 cut(s)	246, 451, 619
BmrFI	CCNGG	3 cut(s)	293, 445, 593
BmsI	GCATC	5 cut(s)	196, 333, 370, 550, 559
Bpu1102I	GCTNAGC	3 cut(s)	165, 309, 601
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	5 cut(s)	291, 443, 444, 564, 592
BsaWI	WCCGGW	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 536
Bse118I	RCCGGY	1 cut(s)	620
BseBI	CCWGG	3 cut(s)	293, 445, 593
BseDI	CCNNGG	5 cut(s)	291, 443, 444, 564, 592
BseGI	GGATG	2 cut(s)	250, 574
BseLI	CCNNNNNNNGG	2 cut(s)	423, 536
BseMII	CTCAG	5 cut(s)	179, 323, 471, 531, 615
BshFI	GGCC	5 cut(s)	245, 452, 510, 528, 591
BshNI	GGYRCC	1 cut(s)	617
BshTI	ACCGGT	1 cut(s)	620
BsiHKAI	GWGCWC	2 cut(s)	154, 602
BsiSI	CCGG	1 cut(s)	621
BslI	CCNNNNNNNGG	2 cut(s)	423, 536
BsmAI	GTCTC	1 cut(s)	433
BsnI	GGCC	5 cut(s)	245, 452, 510, 528, 591
Bso31I	GGTCTC	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	154, 488, 602
Bsp143I	GATC	1 cut(s)	21
Bsp1720I	GCTNAGC	3 cut(s)	165, 309, 601
BspACI	CCGC	5 cut(s)	14, 269, 377, 507, 521
BspANI	GGCC	5 cut(s)	245, 452, 510, 528, 591
BspCNI	CTCAG	5 cut(s)	178, 322, 472, 530, 614
BspLI	GGNNCC	3 cut(s)	246, 451, 619
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	617
BspTNI	GGTCTC	1 cut(s)	433
BsrFI	RCCGGY	1 cut(s)	620
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	5 cut(s)	291, 443, 444, 564, 592
BssMI	GATC	1 cut(s)	21
Bst2UI	CCWGG	3 cut(s)	293, 445, 593
Bst4CI	ACNGT	1 cut(s)	219
BstAPI	GCANNNNNTGC	3 cut(s)	200, 233, 367
BstC8I	GCNNGC	3 cut(s)	234, 461, 554
BstDEI	CTNAG	5 cut(s)	165, 309, 480, 517, 601
BstF5I	GGATG	2 cut(s)	250, 574
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	21
BstNI	CCWGG	3 cut(s)	293, 445, 593
BstNSI	RCATGY	4 cut(s)	283, 290, 361, 463
BstSCI	CCNGG	3 cut(s)	291, 443, 591
BsuRI	GGCC	5 cut(s)	245, 452, 510, 528, 591
BtgZI	GCGATG	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	250, 574
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	215, 234
Cac8I	GCNNGC	3 cut(s)	234, 461, 554
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	4 cut(s)	244, 450, 509, 527
Csp6I	GTAC	1 cut(s)	157
CspAI	ACCGGT	1 cut(s)	620
CviAII	CATG	8 cut(s)	31, 280, 287, 358, 418, 460, 469, 614
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	5 cut(s)	165, 309, 480, 517, 601
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	589
Ecl136II	GAGCTC	1 cut(s)	600
Eco24I	GRGCYC	2 cut(s)	488, 602
Eco31I	GGTCTC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	600
EcoICRI	GAGCTC	1 cut(s)	600
EcoRII	CCWGG	3 cut(s)	291, 443, 591
EcoT22I	ATGCAT	2 cut(s)	363, 474
EcoT38I	GRGCYC	2 cut(s)	488, 602
FaeI	CATG	8 cut(s)	34, 283, 290, 361, 421, 463, 472, 617
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	8 cut(s)	30, 279, 286, 357, 417, 459, 468, 613
FauI	CCCGC	3 cut(s)	262, 384, 514
FokI	GGATG	2 cut(s)	237, 581
FriOI	GRGCYC	2 cut(s)	488, 602
FspBI	CTAG	1 cut(s)	573
FspI	TGCGCA	1 cut(s)	210
GlaI	GCGC	1 cut(s)	210
HaeIII	GGCC	5 cut(s)	245, 452, 510, 528, 591
HapII	CCGG	1 cut(s)	621
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	8 cut(s)	34, 283, 290, 361, 421, 463, 472, 617
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	621
HphI	GGTGA	4 cut(s)	49, 213, 596, 635
Hpy188I	TCNGA	2 cut(s)	75, 568
Hpy188III	TCNNGA	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	37, 45, 474
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	8 cut(s)	4, 262, 283, 346, 361, 370, 421, 472
HpyF3I	CTNAG	5 cut(s)	165, 309, 480, 517, 601
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	8 cut(s)	34, 283, 290, 361, 421, 463, 472, 617
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	157, 597
LweI	GCATC	5 cut(s)	196, 333, 370, 550, 559
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	3 cut(s)	154, 488, 602
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	2 cut(s)	69, 198
MluNI	TGGCCA	1 cut(s)	591
MnlI	CCTC	6 cut(s)	54, 69, 475, 518, 539, 574
Mox20I	TGGCCA	1 cut(s)	591
Mph1103I	ATGCAT	2 cut(s)	363, 474
MscI	TGGCCA	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	2 cut(s)	521, 605
MspI	CCGG	1 cut(s)	621
MspR9I	CCNGG	3 cut(s)	293, 445, 593
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	3 cut(s)	293, 445, 593
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	8 cut(s)	34, 283, 290, 361, 421, 463, 472, 617
NlaIV	GGNNCC	3 cut(s)	246, 451, 619
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	219
NsbI	TGCGCA	1 cut(s)	210
NsiI	ATGCAT	2 cut(s)	363, 474
NspI	RCATGY	4 cut(s)	283, 290, 361, 463
PaeI	GCATGC	1 cut(s)	463
PasI	CCCWGGG	1 cut(s)	444
PflMI	CCANNNNNTGG	1 cut(s)	536
PinAI	ACCGGT	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	98
Psp6I	CCWGG	3 cut(s)	291, 443, 591
PspGI	CCWGG	3 cut(s)	291, 443, 591
PspN4I	GGNNCC	3 cut(s)	246, 451, 619
PspPI	GGNCC	4 cut(s)	244, 450, 509, 527
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	602
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	4 cut(s)	244, 450, 509, 527
ScrFI	CCNGG	3 cut(s)	293, 445, 593
SduI	GDGCHC	3 cut(s)	154, 488, 602
SetI	ASST	9 cut(s)	80, 101, 166, 171, 322, 396, 583, 602, 607
SfaNI	GCATC	5 cut(s)	196, 333, 370, 550, 559
SgrAI	CRCCGGYG	1 cut(s)	620
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	2 cut(s)	69, 198
SsiI	CCGC	5 cut(s)	14, 269, 377, 507, 521
SspI	AATATT	1 cut(s)	114
SspMI	CTAG	1 cut(s)	573
SstI	GAGCTC	1 cut(s)	602
StyD4I	CCNGG	3 cut(s)	291, 443, 591
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	1 cut(s)	101
TasI	AATT	2 cut(s)	69, 198
TauI	GCSGC	1 cut(s)	510
TscAI	CASTG	2 cut(s)	222, 234
TseFI	GTSAC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	19, 27
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	222, 234
Van91I	CCANNNNNTGG	1 cut(s)	536
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	4 cut(s)	283, 290, 361, 463
XspI	CTAG	1 cut(s)	573
Zsp2I	ATGCAT	2 cut(s)	363, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.