Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

52715464 .. 52719496

Gene Structure 4033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58578

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCAGCAGCAGCAGCAGCCACAGCAAATGATGACCGGGATGCCTTCATTTCCACCCACTAACATCACCACCGAGCAAATTCAGAAGTGCCTTGATGAGAACAAAAAGTTGATTCTAGCAATATTGGACAATCAAAACCTTGGAAAACTTGCTGAGTGTGCCCAGTACCAAACTCAGCTTCAAAAGAATCTTATGTATTTAGCAGCAATTGCTGATGCTCAACCACAACCACAAGCACCAACAATGCCAGCCCAGCAGATGGCCCCGCATCCTGCGATGCAACAAGCGGGATATTACATGCAGCATCCTCAGGCTGCAGCGGCAATGGCTCAGCAACAGGGTCTTTTCCCTCAAAAGATGCAAATGCAGTTCAATAGCCCACATCAAATGCACGAATCACACCAGCAGTTACACCAACATGCCATGCAAGGCCAGATGGGAATGAGACCTGGAGGGGCCAATGGCATGCCTTCAATGCATCATACTGAGAGCACCCATGGAGGAAGCAAGCAAGACAACTCAGAGGCTGGGACAGGTGGCGATGGCCAGGGGAGCTCGGCTGGTGGGCACGGCAATGGTGACGGAGAAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

198

Amino Acids

21.5

Weight (kDa)

6.08

Isoelectric Point (pI)

67.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	21 - 78	7.4e-23	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	259
AciI	CCGC	3 cut(s)	266, 287, 320
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	78
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	3 cut(s)	182, 373, 474
AjnI	CCWGG	2 cut(s)	448, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	2 cut(s)	178, 555
AluI	AGCT	2 cut(s)	178, 555
Alw21I	GWGCWC	2 cut(s)	494, 557
Alw26I	GTCTC	1 cut(s)	439
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	4 cut(s)	261, 430, 456, 544
ApeKI	GCWGC	9 cut(s)	4, 7, 10, 13, 16, 203, 301, 314, 317
ApoI	RAATTY	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	262, 456
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	58, 590
AxyI	CCTNAGG	1 cut(s)	309
BaeGI	GKGCMC	2 cut(s)	163, 570
BalI	TGGCCA	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	557
Bbv12I	GWGCWC	2 cut(s)	494, 557
BbvI	GCAGC	9 cut(s)	16, 19, 22, 25, 28, 215, 301, 313, 329
BccI	CCATC	3 cut(s)	253, 430, 536
BceAI	ACGGC	1 cut(s)	586
BciT130I	CCWGG	2 cut(s)	450, 548
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	315
BlpI	GCTNAGC	1 cut(s)	330
Bme1390I	CCNGG	3 cut(s)	37, 450, 548
BmgT120I	GGNCC	2 cut(s)	262, 456
BmiI	GGNNCC	2 cut(s)	264, 457
BmrFI	CCNGG	3 cut(s)	37, 450, 548
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	7 cut(s)	30, 205, 267, 277, 313, 348, 487
BmuI	ACTGGG	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	471
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	439
BsaJI	CCNNGG	3 cut(s)	139, 496, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	2 cut(s)	330, 580
BseBI	CCWGG	2 cut(s)	450, 548
BseDI	CCNNGG	3 cut(s)	139, 496, 547
BseGI	GGATG	3 cut(s)	45, 268, 304
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	2 cut(s)	330, 580
BseMII	CTCAG	6 cut(s)	144, 188, 323, 344, 477, 534
BseNI	ACTGG	1 cut(s)	163
BseSI	GKGCMC	2 cut(s)	163, 570
BseXI	GCAGC	9 cut(s)	16, 19, 22, 25, 28, 215, 301, 313, 329
BseYI	CCCAGC	2 cut(s)	252, 527
BshFI	GGCC	4 cut(s)	263, 432, 458, 546
BsiHKAI	GWGCWC	2 cut(s)	494, 557
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	439
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	4 cut(s)	263, 432, 458, 546
Bso31I	GGTCTC	1 cut(s)	439
Bsp1286I	GDGCHC	4 cut(s)	163, 494, 557, 570
Bsp1720I	GCTNAGC	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	496
BspACI	CCGC	3 cut(s)	266, 287, 320
BspANI	GGCC	4 cut(s)	263, 432, 458, 546
BspCNI	CTCAG	6 cut(s)	145, 187, 322, 343, 478, 533
BspLI	GGNNCC	2 cut(s)	264, 457
BspMAI	CTGCAG	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	439
BsrDI	GCAATG	2 cut(s)	330, 580
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	139, 496, 547
BssT1I	CCWWGG	2 cut(s)	139, 496
Bst2UI	CCWGG	2 cut(s)	450, 548
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	249, 467, 509
BstDEI	CTNAG	6 cut(s)	153, 174, 309, 330, 486, 520
BstDSI	CCRYGG	1 cut(s)	496
BstF5I	GGATG	3 cut(s)	45, 268, 304
BstMAI	GTCTC	1 cut(s)	439
BstNI	CCWGG	2 cut(s)	450, 548
BstNSI	RCATGY	3 cut(s)	301, 422, 469
BstSCI	CCNGG	3 cut(s)	35, 448, 546
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	2 cut(s)	163, 570
BstV1I	GCAGC	9 cut(s)	16, 19, 22, 25, 28, 215, 301, 313, 329
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	4 cut(s)	263, 432, 458, 546
BtgI	CCRYGG	1 cut(s)	496
BtgZI	GCGATG	2 cut(s)	290, 555
BtsCI	GGATG	3 cut(s)	45, 268, 304
Cac8I	GCNNGC	3 cut(s)	249, 467, 509
CaiI	CAGNNNCTG	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	262, 456
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	5 cut(s)	298, 419, 424, 466, 497
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	6 cut(s)	153, 174, 309, 330, 486, 520
EaeI	YGGCCR	1 cut(s)	544
Ecl136II	GAGCTC	1 cut(s)	555
Eco130I	CCWWGG	2 cut(s)	139, 496
Eco24I	GRGCYC	1 cut(s)	557
Eco31I	GGTCTC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	555
Eco81I	CCTNAGG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	555
EcoRII	CCWGG	2 cut(s)	448, 546
EcoT14I	CCWWGG	2 cut(s)	139, 496
EcoT22I	ATGCAT	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	557
ErhI	CCWWGG	2 cut(s)	139, 496
FaeI	CATG	5 cut(s)	301, 422, 427, 469, 500
FaiI	YATR	7 cut(s)	194, 299, 420, 425, 467, 483, 498
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	5 cut(s)	297, 418, 423, 465, 496
FauI	CCCGC	2 cut(s)	273, 280
FokI	GGATG	3 cut(s)	52, 255, 291
FriOI	GRGCYC	1 cut(s)	557
FspBI	CTAG	1 cut(s)	116
GsaI	CCCAGC	2 cut(s)	256, 531
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	4 cut(s)	263, 432, 458, 546
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	5 cut(s)	301, 422, 427, 469, 500
HinfI	GANTC	3 cut(s)	112, 187, 395
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	58, 590
Hpy188I	TCNGA	2 cut(s)	84, 523
HpyAV	CCTTC	2 cut(s)	54, 480
HpyCH4V	TGCA	9 cut(s)	4, 280, 301, 317, 361, 367, 391, 427, 478
HpyF3I	CTNAG	6 cut(s)	153, 174, 309, 330, 486, 520
Hsp92II	CATG	5 cut(s)	301, 422, 427, 469, 500
LmnI	GCTCC	1 cut(s)	552
Lsp1109I	GCAGC	9 cut(s)	16, 19, 22, 25, 28, 215, 301, 313, 329
LweI	GCATC	7 cut(s)	30, 205, 267, 277, 313, 348, 487
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	408, 578
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	4 cut(s)	163, 494, 557, 570
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	2 cut(s)	78, 207
MluNI	TGGCCA	1 cut(s)	546
MnlI	CCTC	5 cut(s)	318, 360, 446, 494, 517
Mox20I	TGGCCA	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	546
MslI	CAYNNNNRTG	2 cut(s)	417, 573
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	3 cut(s)	37, 450, 548
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	2 cut(s)	450, 548
NciI	CCSGG	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	496
NlaIII	CATG	5 cut(s)	301, 422, 427, 469, 500
NlaIV	GGNNCC	2 cut(s)	264, 457
NmeAIII	GCCGAG	1 cut(s)	536
NmuCI	GTSAC	1 cut(s)	578
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	3 cut(s)	301, 422, 469
PaeI	GCATGC	1 cut(s)	469
PfeI	GAWTC	3 cut(s)	112, 187, 395
PflMI	CCANNNNNTGG	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	448, 546
PspFI	CCCAGC	2 cut(s)	252, 527
PspGI	CCWGG	2 cut(s)	448, 546
PspN4I	GGNNCC	2 cut(s)	264, 457
PspPI	GGNCC	2 cut(s)	262, 456
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	417, 573
SacI	GAGCTC	1 cut(s)	557
Sau96I	GGNCC	2 cut(s)	262, 456
ScrFI	CCNGG	3 cut(s)	37, 450, 548
SduI	GDGCHC	4 cut(s)	163, 494, 557, 570
SetI	ASST	5 cut(s)	141, 180, 451, 538, 557
SfaNI	GCATC	7 cut(s)	30, 205, 267, 277, 313, 348, 487
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	2 cut(s)	417, 573
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	2 cut(s)	78, 207
SsiI	CCGC	3 cut(s)	266, 287, 320
SspI	AATATT	1 cut(s)	123
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	557
StyD4I	CCNGG	3 cut(s)	35, 448, 546
StyI	CCWWGG	2 cut(s)	139, 496
TasI	AATT	2 cut(s)	78, 207
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	3 cut(s)	112, 187, 395
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	9 cut(s)	4, 7, 10, 13, 16, 203, 301, 314, 317
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	597
Van91I	CCANNNNNTGG	1 cut(s)	259
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	3 cut(s)	301, 422, 469
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.