Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Forward (+)

357345 .. 359337

Gene Structure 1993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCAGCAATCTCCACAGATGATTCCGATGGTTCTTCCTTCATTTCCGCCCACCAATAATATCACCACCGAACAGATCCAAAAGTATCTTGATGAGAACAAGAAGCTGATAATGGCGATCTTGGAAAATCAGAACCTCGGTAAACTTGCAGAATGTGCTCAGTATCAAGCTCTTCTCCAGAAGAATTTGATGTATCTCGCTGCAATTGCGGATGCTCAACCTCAGCCACCAGCAGCTACACTAACATCAGGAGCCATGACTCCCCAAGCAATGGCTCCTAATCCGTCATCAATGCAGCCACCACCAAGCTACTTCATGCAGCAACATCAAGCTGTGGGAATGGCTCAACAAATACCTCCTGGGATTTTCCCTCCTAGAGGTCCATTGCAATTTGGTAGCCCGCATCAGTTTCTGGATCCGCAGCAACAGTTACATCAACAAGCTATGCAAGGGCACATGGGGATTAGACCAATGGGTTTGAATAATAACAACGGACTGCAACATCAAATGCACCACCATGAAACTGCTCTTGCCGCAAACAATGCGGGTCCTAACGATGCTAGTGGAGGAGGTAAACCGGATGGGACCAATATGAGCCAGAGTGGAGCTGATGGGCAAGGTGGCTCAGCCGCTAGACATGGCGGTGGTGATGCAAAAACTGAAGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

223

Amino Acids

23.77

Weight (kDa)

6.48

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	20 - 75	2.4e-22	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AciI	CCGC	8 cut(s)	47, 209, 401, 419, 534, 545, 630, 642
AclWI	GGATC	3 cut(s)	70, 410, 423
AcsI	RAATTY	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	271, 377
AgsI	TTSAA	1 cut(s)	481
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	7 cut(s)	106, 170, 236, 309, 332, 443, 608
AluI	AGCT	7 cut(s)	106, 170, 236, 309, 332, 443, 608
Alw21I	GWGCWC	1 cut(s)	160
AlwI	GGATC	3 cut(s)	70, 410, 423
AlwNI	CAGNNNCTG	1 cut(s)	412
ApeKI	GCWGC	6 cut(s)	4, 200, 233, 295, 319, 421
ApoI	RAATTY	1 cut(s)	184
AspS9I	GGNCC	3 cut(s)	380, 548, 585
AsuHPI	GGTGA	2 cut(s)	55, 659
AvaII	GGWCC	3 cut(s)	380, 548, 585
BaeGI	GKGCMC	1 cut(s)	456
BamHI	GGATCC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	160
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	6 cut(s)	16, 187, 245, 307, 331, 433
BccI	CCATC	3 cut(s)	22, 575, 605
BciT130I	CCWGG	1 cut(s)	360
BfaI	CTAG	3 cut(s)	375, 561, 633
BisI	GCNGC	8 cut(s)	5, 201, 234, 296, 320, 422, 534, 630
BlpI	GCTNAGC	1 cut(s)	625
BlsI	GCNGC	8 cut(s)	6, 202, 235, 297, 321, 423, 535, 631
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	3 cut(s)	380, 548, 585
BmgT120I	GGNCC	3 cut(s)	380, 548, 585
BmiI	GGNNCC	5 cut(s)	253, 276, 417, 549, 586
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	4 cut(s)	202, 412, 547, 640
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	136, 359
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 377
Bse3DI	GCAATG	2 cut(s)	276, 383
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	136, 359
BseGI	GGATG	2 cut(s)	217, 586
BseLI	CCNNNNNNNGG	2 cut(s)	271, 377
BseMI	GCAATG	2 cut(s)	276, 383
BseMII	CTCAG	3 cut(s)	173, 236, 639
BseRI	GAGGAG	1 cut(s)	582
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	6 cut(s)	16, 187, 245, 307, 331, 433
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	578
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	2 cut(s)	271, 377
BsmFI	GGGAC	1 cut(s)	598
Bsp1286I	GDGCHC	2 cut(s)	160, 456
Bsp143I	GATC	3 cut(s)	75, 117, 415
Bsp1720I	GCTNAGC	1 cut(s)	625
BspACI	CCGC	8 cut(s)	47, 209, 401, 419, 534, 545, 630, 642
BspCNI	CTCAG	3 cut(s)	172, 235, 638
BspLI	GGNNCC	5 cut(s)	253, 276, 417, 549, 586
BspPI	GGATC	3 cut(s)	70, 410, 423
BspQI	GCTCTTC	1 cut(s)	177
BsrDI	GCAATG	2 cut(s)	276, 383
BssECI	CCNNGG	2 cut(s)	136, 359
BssMI	GATC	3 cut(s)	75, 117, 415
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	177
BstAPI	GCANNNNNTGC	2 cut(s)	155, 542
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	3 cut(s)	159, 222, 625
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	217, 586
BstKTI	GATC	3 cut(s)	78, 120, 418
BstMBI	GATC	3 cut(s)	75, 117, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 206, 533, 542
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	456
BstV1I	GCAGC	6 cut(s)	16, 187, 245, 307, 331, 433
BstX2I	RGATCY	2 cut(s)	75, 415
BstYI	RGATCY	2 cut(s)	75, 415
BtsCI	GGATG	2 cut(s)	217, 586
Cac8I	GCNNGC	1 cut(s)	401
CaiI	CAGNNNCTG	1 cut(s)	412
Cfr13I	GGNCC	3 cut(s)	380, 548, 585
CviAII	CATG	5 cut(s)	256, 316, 457, 518, 638
DdeI	CTNAG	3 cut(s)	159, 222, 625
DpnI	GATC	3 cut(s)	77, 119, 417
DpnII	GATC	3 cut(s)	75, 117, 415
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	36
Eco47I	GGWCC	3 cut(s)	380, 548, 585
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	358
FaeI	CATG	5 cut(s)	259, 319, 460, 521, 641
FaiI	YATR	7 cut(s)	257, 317, 446, 458, 519, 593, 639
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	5 cut(s)	255, 315, 456, 517, 637
FauI	CCCGC	2 cut(s)	408, 538
Fnu4HI	GCNGC	8 cut(s)	5, 201, 234, 296, 320, 422, 534, 630
FokI	GGATG	2 cut(s)	224, 593
Fsp4HI	GCNGC	8 cut(s)	5, 201, 234, 296, 320, 422, 534, 630
FspBI	CTAG	3 cut(s)	375, 561, 633
GluI	GCNGC	8 cut(s)	5, 201, 234, 296, 320, 422, 534, 630
GsuI	CTGGAG	1 cut(s)	161
HapII	CCGG	1 cut(s)	578
Hin1II	CATG	5 cut(s)	259, 319, 460, 521, 641
HinfI	GANTC	2 cut(s)	22, 259
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	2 cut(s)	55, 659
Hpy166II	GTNNAC	2 cut(s)	143, 575
Hpy188I	TCNGA	2 cut(s)	27, 132
Hpy188III	TCNNGA	4 cut(s)	89, 178, 249, 413
Hpy8I	GTNNAC	2 cut(s)	143, 575
HpyAV	CCTTC	2 cut(s)	48, 656
HpyCH4III	ACNGT	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 206, 533, 542
HpyF3I	CTNAG	3 cut(s)	159, 222, 625
Hsp92II	CATG	5 cut(s)	259, 319, 460, 521, 641
Kzo9I	GATC	3 cut(s)	75, 117, 415
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	251, 280, 605
LpnPI	CCDG	8 cut(s)	191, 234, 243, 345, 372, 398, 591, 611
Lsp1109I	GCAGC	6 cut(s)	16, 187, 245, 307, 331, 433
LweI	GCATC	4 cut(s)	202, 412, 547, 640
MaeI	CTAG	3 cut(s)	375, 561, 633
MaeIII	GTNAC	1 cut(s)	429
MalI	GATC	3 cut(s)	77, 119, 417
MboI	GATC	3 cut(s)	75, 117, 415
MboII	GAAGA	3 cut(s)	26, 164, 193
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	2 cut(s)	75, 415
MhlI	GDGCHC	2 cut(s)	160, 456
MluCI	AATT	3 cut(s)	184, 204, 389
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	7 cut(s)	146, 231, 366, 371, 381, 560, 563
MslI	CAYNNNNRTG	2 cut(s)	516, 642
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	360
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	155, 206, 533, 542
NdeII	GATC	3 cut(s)	75, 117, 415
NlaIII	CATG	5 cut(s)	259, 319, 460, 521, 641
NlaIV	GGNNCC	5 cut(s)	253, 276, 417, 549, 586
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	8 cut(s)	6, 202, 235, 297, 321, 423, 535, 631
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	548
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	5 cut(s)	253, 276, 417, 549, 586
PspPI	GGNCC	3 cut(s)	380, 548, 585
PspPPI	RGGWCCY	1 cut(s)	548
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	75, 415
RseI	CAYNNNNRTG	2 cut(s)	516, 642
SapI	GCTCTTC	1 cut(s)	177
SatI	GCNGC	8 cut(s)	5, 201, 234, 296, 320, 422, 534, 630
Sau3AI	GATC	3 cut(s)	75, 117, 415
Sau96I	GGNCC	3 cut(s)	380, 548, 585
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	2 cut(s)	160, 456
SfaNI	GCATC	4 cut(s)	202, 412, 547, 640
SinI	GGWCC	3 cut(s)	380, 548, 585
SmiMI	CAYNNNNRTG	2 cut(s)	516, 642
Sse9I	AATT	3 cut(s)	184, 204, 389
SsiI	CCGC	8 cut(s)	47, 209, 401, 419, 534, 545, 630, 642
SspMI	CTAG	3 cut(s)	375, 561, 633
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	429
TasI	AATT	3 cut(s)	184, 204, 389
TauI	GCSGC	2 cut(s)	536, 632
TfiI	GAWTC	1 cut(s)	22
TseI	GCWGC	6 cut(s)	4, 200, 233, 295, 319, 421
TspDTI	ATGAA	3 cut(s)	30, 304, 534
TspGWI	ACGGA	2 cut(s)	273, 507
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	380, 548, 585
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	1 cut(s)	184
XspI	CTAG	3 cut(s)	375, 561, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.