Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

19620768 .. 19624165

Gene Structure 3398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1087000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCAGCAGCCACCGCAAATGATCCCCGTCATGCCTTCATTTCCGCCCACCAACATCACCACCGAGCAAATTCAGAAGTATCTTGATGACAACAAAAAGTTGATTCTGGCAATATTGGATAATCAAAATCTTGGAAAACTTGCCGAGTGTGCTCAGTACCAAGCTCAGCTTCAAAAGAATCTGATGTATTTAGCAGCAATTGCCGATGCGCAGCCACAGGCACCAGCAGTGCCTGCCCAGATGGCCCCACATCCTGCCATGCAACAGGCGGGATATTACATGCAACATCCTCAGGCAGCAGCAATGGCTCAGCAACAGGGTATTTTCCCCCCAAAAATGCCGATGCAGTTCAATAACATGCATCAAATGCATGACCCGCAGCAGCAGCAGCAGCTACATCAGCAGCACCAACAAGCCATGCAAGGGCAAATGGGAATGAGACCCGGGGGGGCCAACGGCATGCCTTCCATGCATCATACTGAGGGCTCATTTGGTGGTGGTAGTGGCGGCCCAAACTCAGTGGGAGGCCCAAATGATGGGCGTGGAGGAAGCAAGCAAGACGCCTCGGATGCTGGGGCCGGTGGTGATGGCCAGGGGAGCTCAGCTGGTGGGCATGGCAACGGTGATGGAGAGGACGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

215

Amino Acids

22.62

Weight (kDa)

5.92

Isoelectric Point (pI)

66.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	18 - 73	1e-20	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	536
AciI	CCGC	5 cut(s)	14, 44, 269, 377, 507
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	423, 536
AgsI	TTSAA	2 cut(s)	173, 352
AjnI	CCWGG	1 cut(s)	591
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	5 cut(s)	164, 169, 394, 600, 605
AluI	AGCT	5 cut(s)	164, 169, 394, 600, 605
Alw21I	GWGCWC	2 cut(s)	154, 602
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	6 cut(s)	243, 450, 508, 526, 576, 589
ApoI	RAATTY	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	5 cut(s)	244, 450, 509, 527, 576
AsuC2I	CCSGG	2 cut(s)	444, 445
AsuHPI	GGTGA	3 cut(s)	49, 596, 635
AvaI	CYCGRG	1 cut(s)	443
AxyI	CCTNAGG	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	591
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	488, 602
Bbv12I	GWGCWC	2 cut(s)	154, 602
BccI	CCATC	4 cut(s)	235, 530, 581, 620
BceAI	ACGGC	1 cut(s)	472
BciT130I	CCWGG	1 cut(s)	593
BcnI	CCSGG	2 cut(s)	444, 445
BcoDI	GTCTC	1 cut(s)	433
BglI	GCCNNNNNGGC	1 cut(s)	242
BlpI	GCTNAGC	3 cut(s)	165, 309, 601
Bme1390I	CCNGG	3 cut(s)	444, 445, 593
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	5 cut(s)	244, 450, 509, 527, 576
BmiI	GGNNCC	4 cut(s)	222, 246, 451, 577
BmrFI	CCNGG	3 cut(s)	444, 445, 593
BmsI	GCATC	5 cut(s)	196, 333, 370, 481, 559
Bpu1102I	GCTNAGC	3 cut(s)	165, 309, 601
BpuMI	CCSGG	2 cut(s)	444, 445
BsaHI	GRCGYC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	4 cut(s)	443, 444, 564, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 536
Bse118I	RCCGGY	1 cut(s)	578
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	4 cut(s)	443, 444, 564, 592
BseGI	GGATG	3 cut(s)	250, 286, 574
BseLI	CCNNNNNNNGG	2 cut(s)	423, 536
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	7 cut(s)	167, 179, 305, 323, 471, 531, 615
BseYI	CCCAGC	1 cut(s)	572
BshFI	GGCC	6 cut(s)	245, 452, 510, 528, 578, 591
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	154, 602
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	444, 579
BslI	CCNNNNNNNGG	2 cut(s)	423, 536
BsmAI	GTCTC	1 cut(s)	433
BsnI	GGCC	6 cut(s)	245, 452, 510, 528, 578, 591
Bso31I	GGTCTC	1 cut(s)	433
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	3 cut(s)	154, 488, 602
Bsp143I	GATC	1 cut(s)	21
Bsp1720I	GCTNAGC	3 cut(s)	165, 309, 601
BspACI	CCGC	5 cut(s)	14, 44, 269, 377, 507
BspANI	GGCC	6 cut(s)	245, 452, 510, 528, 578, 591
BspCNI	CTCAG	7 cut(s)	166, 178, 304, 322, 472, 530, 614
BspLI	GGNNCC	4 cut(s)	222, 246, 451, 577
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	578
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	4 cut(s)	443, 444, 564, 592
BssMI	GATC	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	1 cut(s)	623
BstACI	GRCGYC	1 cut(s)	561
BstAPI	GCANNNNNTGC	3 cut(s)	200, 233, 367
BstC8I	GCNNGC	3 cut(s)	234, 461, 554
BstDEI	CTNAG	7 cut(s)	153, 165, 291, 309, 480, 517, 601
BstF5I	GGATG	3 cut(s)	250, 286, 574
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	3 cut(s)	283, 361, 463
BstSCI	CCNGG	3 cut(s)	442, 443, 591
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	6 cut(s)	245, 452, 510, 528, 578, 591
BtsCI	GGATG	3 cut(s)	250, 286, 574
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	234, 525
Cac8I	GCNNGC	3 cut(s)	234, 461, 554
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	5 cut(s)	244, 450, 509, 527, 576
Cfr9I	CCCGGG	1 cut(s)	443
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviAII	CATG	9 cut(s)	31, 259, 280, 358, 371, 418, 460, 469, 614
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	7 cut(s)	153, 165, 291, 309, 480, 517, 601
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	589
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	600
Eco24I	GRGCYC	2 cut(s)	488, 602
Eco31I	GGTCTC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	600
Eco81I	CCTNAGG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	591
EcoT22I	ATGCAT	3 cut(s)	363, 372, 474
EcoT38I	GRGCYC	2 cut(s)	488, 602
FaeI	CATG	9 cut(s)	34, 262, 283, 361, 374, 421, 463, 472, 617
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	9 cut(s)	30, 258, 279, 357, 370, 417, 459, 468, 613
FauI	CCCGC	2 cut(s)	262, 384
FokI	GGATG	3 cut(s)	237, 273, 581
FriOI	GRGCYC	2 cut(s)	488, 602
FspI	TGCGCA	1 cut(s)	210
GlaI	GCGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	576
HaeIII	GGCC	6 cut(s)	245, 452, 510, 528, 578, 591
HapII	CCGG	2 cut(s)	444, 579
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	9 cut(s)	34, 262, 283, 361, 374, 421, 463, 472, 617
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	2 cut(s)	103, 178
HpaII	CCGG	2 cut(s)	444, 579
HphI	GGTGA	3 cut(s)	49, 596, 635
Hpy188I	TCNGA	3 cut(s)	75, 183, 568
Hpy188III	TCNNGA	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	45, 474
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4V	TGCA	8 cut(s)	4, 262, 283, 346, 361, 370, 421, 472
HpyF3I	CTNAG	7 cut(s)	153, 165, 291, 309, 480, 517, 601
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	9 cut(s)	34, 262, 283, 361, 374, 421, 463, 472, 617
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	597
LweI	GCATC	5 cut(s)	196, 333, 370, 481, 559
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	3 cut(s)	154, 488, 602
MlsI	TGGCCA	1 cut(s)	591
MluCI	AATT	2 cut(s)	69, 198
MluNI	TGGCCA	1 cut(s)	591
MnlI	CCTC	6 cut(s)	300, 475, 518, 539, 574, 625
Mox20I	TGGCCA	1 cut(s)	591
Mph1103I	ATGCAT	3 cut(s)	363, 372, 474
MscI	TGGCCA	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	605
MspI	CCGG	2 cut(s)	444, 579
MspR9I	CCNGG	3 cut(s)	444, 445, 593
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	593
NciI	CCSGG	2 cut(s)	444, 445
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	9 cut(s)	34, 262, 283, 361, 374, 421, 463, 472, 617
NlaIV	GGNNCC	4 cut(s)	222, 246, 451, 577
NmeAIII	GCCGAG	1 cut(s)	169
NsbI	TGCGCA	1 cut(s)	210
NsiI	ATGCAT	3 cut(s)	363, 372, 474
NspI	RCATGY	3 cut(s)	283, 361, 463
PaeI	GCATGC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	103, 178
PflMI	CCANNNNNTGG	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	591
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	4 cut(s)	222, 246, 451, 577
PspPI	GGNCC	5 cut(s)	244, 450, 509, 527, 576
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	602
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	5 cut(s)	244, 450, 509, 527, 576
ScrFI	CCNGG	3 cut(s)	444, 445, 593
SduI	GDGCHC	3 cut(s)	154, 488, 602
SetI	ASST	5 cut(s)	166, 171, 396, 602, 607
SfaNI	GCATC	5 cut(s)	196, 333, 370, 481, 559
SmaI	CCCGGG	1 cut(s)	445
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	2 cut(s)	69, 198
SsiI	CCGC	5 cut(s)	14, 44, 269, 377, 507
SspI	AATATT	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	602
StyD4I	CCNGG	3 cut(s)	442, 443, 591
TaaI	ACNGT	1 cut(s)	623
TasI	AATT	2 cut(s)	69, 198
TauI	GCSGC	1 cut(s)	510
TfiI	GAWTC	2 cut(s)	103, 178
TscAI	CASTG	2 cut(s)	234, 525
TspDTI	ATGAA	1 cut(s)	27
TspMI	CCCGGG	1 cut(s)	443
TspRI	CASTG	2 cut(s)	234, 525
Van91I	CCANNNNNTGG	1 cut(s)	536
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	3 cut(s)	283, 361, 463
XmaI	CCCGGG	1 cut(s)	443
Zsp2I	ATGCAT	3 cut(s)	363, 372, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.