Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

22826369 .. 22827940

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1157100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAGTACCTTGATGACAACAAAAAGTTGATTCTGGCAATATTGGATAATCAAAATCTTGGAAAACTTGCTGAGTGTGCTCAGTACCAGGCTCTGCTTCAAAAGAATCTGATGTATTTAGCAGCAATTGCCGATGCGCAACCACAGGCACCAGCTGCCCCTCCCCAGATGGCCCCACATCCTGCTATGCAACAGGCAGGATATTACATGCAACATCCTCAGGCAGCAGCAATGGCTCAGCAACAGGGTATTTTCTCCCCAAAGATGCCGATGCAATTCAATAACATGCATCAAATGCACGATCCACAGCAGCACCAACAAGCCATGCAAGGGCAAATGGGAATGAGACCTGGAGGGCCTAACGGCATGCCTTCCATGCTTCATACTGAGGCCACACATGGTGGTGGTGGTAGTGGCGGCCCAAATTCAGCTGGAGACCCAAATGATGGGCGTGGAGGAAGCAAGCAAGACGCCTCTGAGTCTGGGGCAGGTGGTGATGGCCAGGGGACCTCAGCCGGCGGGCGTGGAAATGGTGATGGAGAGGACGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

185

Amino Acids

19.17

Weight (kDa)

5.7

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	4 - 49	1.1e-16	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc16I	TGCGCA	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	446
AciI	CCGC	2 cut(s)	417, 519
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	424
AcyI	GRCGYC	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	8, 86
AfiI	CCNNNNNNNGG	2 cut(s)	330, 446
AgsI	TTSAA	2 cut(s)	101, 280
AjnI	CCWGG	3 cut(s)	87, 349, 501
AluBI	AGCT	2 cut(s)	155, 431
AluI	AGCT	2 cut(s)	155, 431
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	2 cut(s)	340, 429
AlwI	GGATC	1 cut(s)	296
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	5 cut(s)	171, 356, 390, 418, 499
ApeKI	GCWGC	5 cut(s)	122, 155, 224, 227, 310
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	4 cut(s)	172, 356, 419, 507
AsuHPI	GGTGA	2 cut(s)	506, 545
AvaII	GGWCC	1 cut(s)	507
AxyI	CCTNAGG	1 cut(s)	219
BalI	TGGCCA	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	82
BbvCI	CCTCAGC	1 cut(s)	511
BbvI	GCAGC	5 cut(s)	134, 142, 236, 239, 322
BccI	CCATC	4 cut(s)	163, 440, 491, 530
BceAI	ACGGC	1 cut(s)	379
BciT130I	CCWGG	3 cut(s)	89, 351, 503
BcoDI	GTCTC	2 cut(s)	340, 429
BfuAI	ACCTGC	1 cut(s)	479
BisI	GCNGC	6 cut(s)	123, 156, 225, 228, 311, 418
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	6 cut(s)	124, 157, 226, 229, 312, 419
Bme1390I	CCNGG	3 cut(s)	89, 351, 503
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	4 cut(s)	172, 356, 419, 507
BmiI	GGNNCC	3 cut(s)	150, 174, 508
BmrFI	CCNGG	3 cut(s)	89, 351, 503
BmsI	GCATC	4 cut(s)	124, 255, 261, 298
BpmI	CTGGAG	2 cut(s)	372, 453
Bpu10I	CCTNAGC	1 cut(s)	511
Bpu1102I	GCTNAGC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	471
BsaI	GGTCTC	2 cut(s)	340, 429
BsaJI	CCNNGG	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 446
Bse118I	RCCGGY	1 cut(s)	515
Bse21I	CCTNAGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	3 cut(s)	89, 351, 503
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	2 cut(s)	178, 214
BseLI	CCNNNNNNNGG	2 cut(s)	330, 446
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	7 cut(s)	63, 95, 233, 251, 378, 468, 525
BseXI	GCAGC	5 cut(s)	134, 142, 236, 239, 322
BshFI	GGCC	5 cut(s)	173, 358, 392, 420, 501
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	2 cut(s)	330, 446
BsmAI	GTCTC	2 cut(s)	340, 429
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	5 cut(s)	173, 358, 392, 420, 501
Bso31I	GGTCTC	2 cut(s)	340, 429
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	301
Bsp1720I	GCTNAGC	1 cut(s)	237
BspACI	CCGC	2 cut(s)	417, 519
BspANI	GGCC	5 cut(s)	173, 358, 392, 420, 501
BspCNI	CTCAG	7 cut(s)	64, 94, 232, 250, 379, 469, 524
BspLI	GGNNCC	3 cut(s)	150, 174, 508
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	148
BspTNI	GGTCTC	2 cut(s)	340, 429
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	1 cut(s)	301
BssNI	GRCGYC	1 cut(s)	471
Bst2UI	CCWGG	3 cut(s)	89, 351, 503
BstACI	GRCGYC	1 cut(s)	471
BstAPI	GCANNNNNTGC	3 cut(s)	128, 155, 295
BstC8I	GCNNGC	4 cut(s)	368, 464, 517, 521
BstDEI	CTNAG	7 cut(s)	72, 81, 219, 237, 387, 477, 511
BstF5I	GGATG	2 cut(s)	178, 214
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	340, 429
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 128, 155, 233, 295, 376
BstNI	CCWGG	3 cut(s)	89, 351, 503
BstNSI	RCATGY	3 cut(s)	211, 289, 370
BstSCI	CCNGG	3 cut(s)	87, 349, 501
BstV1I	GCAGC	5 cut(s)	134, 142, 236, 239, 322
Bsu36I	CCTNAGG	1 cut(s)	219
BsuRI	GGCC	5 cut(s)	173, 358, 392, 420, 501
BtsCI	GGATG	2 cut(s)	178, 214
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	4 cut(s)	368, 464, 517, 521
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	4 cut(s)	172, 356, 419, 507
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	7, 85
CviAII	CATG	6 cut(s)	208, 286, 325, 367, 376, 398
CviQI	GTAC	2 cut(s)	7, 85
DdeI	CTNAG	7 cut(s)	72, 81, 219, 237, 387, 477, 511
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
DraIII	CACNNNGTG	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	499
Eco31I	GGTCTC	2 cut(s)	340, 429
Eco47I	GGWCC	1 cut(s)	507
Eco81I	CCTNAGG	1 cut(s)	219
EcoO109I	RGGNCCY	2 cut(s)	356, 507
EcoRII	CCWGG	3 cut(s)	87, 349, 501
EcoT22I	ATGCAT	1 cut(s)	291
FaeI	CATG	6 cut(s)	211, 289, 328, 370, 379, 401
FaiI	YATR	8 cut(s)	188, 209, 287, 326, 368, 377, 384, 399
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	6 cut(s)	207, 285, 324, 366, 375, 397
FauI	CCCGC	1 cut(s)	512
Fnu4HI	GCNGC	6 cut(s)	123, 156, 225, 228, 311, 418
FokI	GGATG	2 cut(s)	165, 201
Fsp4HI	GCNGC	6 cut(s)	123, 156, 225, 228, 311, 418
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	6 cut(s)	123, 156, 225, 228, 311, 418
GsuI	CTGGAG	2 cut(s)	372, 453
HaeIII	GGCC	5 cut(s)	173, 358, 392, 420, 501
HapII	CCGG	1 cut(s)	516
HgaI	GACGC	1 cut(s)	479
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	6 cut(s)	211, 289, 328, 370, 379, 401
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	3 cut(s)	31, 106, 479
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	2 cut(s)	506, 545
Hpy188I	TCNGA	2 cut(s)	111, 478
HpyAV	CCTTC	1 cut(s)	381
HpyCH4V	TGCA	7 cut(s)	4, 190, 211, 274, 289, 298, 328
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 128, 155, 233, 295, 376
HpyF3I	CTNAG	7 cut(s)	72, 81, 219, 237, 387, 477, 511
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	6 cut(s)	211, 289, 328, 370, 379, 401
HspAI	GCGC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	515
KroNI	GCCGGC	1 cut(s)	517
Kzo9I	GATC	1 cut(s)	301
Lsp1109I	GCAGC	5 cut(s)	134, 142, 236, 239, 322
LweI	GCATC	4 cut(s)	124, 255, 261, 298
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	501
MluCI	AATT	3 cut(s)	126, 275, 424
MluNI	TGGCCA	1 cut(s)	501
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	8 cut(s)	171, 228, 347, 382, 449, 484, 520, 535
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	291
MroNI	GCCGGC	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	501
MspA1I	CMGCKG	2 cut(s)	155, 431
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	3 cut(s)	89, 351, 503
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	3 cut(s)	89, 351, 503
MwoI	GCNNNNNNNGC	6 cut(s)	77, 128, 155, 233, 295, 376
NaeI	GCCGGC	1 cut(s)	517
NdeII	GATC	1 cut(s)	301
NgoMIV	GCCGGC	1 cut(s)	515
NlaIII	CATG	6 cut(s)	211, 289, 328, 370, 379, 401
NlaIV	GGNNCC	3 cut(s)	150, 174, 508
NsbI	TGCGCA	1 cut(s)	138
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	3 cut(s)	211, 289, 370
PaeI	GCATGC	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	517
PfeI	GAWTC	2 cut(s)	31, 106
PflMI	CCANNNNNTGG	1 cut(s)	446
PkrI	GCNGC	6 cut(s)	124, 157, 226, 229, 312, 419
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PpuMI	RGGWCCY	1 cut(s)	507
Psp5II	RGGWCCY	1 cut(s)	507
Psp6I	CCWGG	3 cut(s)	87, 349, 501
PspGI	CCWGG	3 cut(s)	87, 349, 501
PspN4I	GGNNCC	3 cut(s)	150, 174, 508
PspPI	GGNCC	4 cut(s)	172, 356, 419, 507
PspPPI	RGGWCCY	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	94
PvuII	CAGCTG	2 cut(s)	155, 431
RsaI	GTAC	2 cut(s)	8, 86
RsaNI	GTAC	2 cut(s)	7, 85
RseI	CAYNNNNRTG	1 cut(s)	402
SatI	GCNGC	6 cut(s)	123, 156, 225, 228, 311, 418
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	4 cut(s)	172, 356, 419, 507
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	3 cut(s)	89, 351, 503
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	6 cut(s)	12, 157, 352, 433, 493, 512
SfaNI	GCATC	4 cut(s)	124, 255, 261, 298
SinI	GGWCC	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	402
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	3 cut(s)	126, 275, 424
SsiI	CCGC	2 cut(s)	417, 519
SspI	AATATT	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	87, 349, 501
TasI	AATT	3 cut(s)	126, 275, 424
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	31, 106
TseI	GCWGC	5 cut(s)	122, 155, 224, 227, 310
TspDTI	ATGAA	1 cut(s)	371
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	3 cut(s)	211, 289, 370
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.