Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

52466877 .. 52470875

Gene Structure 3999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG293900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTGCAGTGCCTTGATGAGAACAAAAAGTTGATTCTAGCAATATTGGACAATCAAAACCTTGGAAAACTTGCTGAGTGTGCCCAGTACCAAACTCAGCTTCAAAAGAATCTTATGTATTTAGCAGCAATTGCTGATGCACAACCACAACCACAAGCACCAACAATGCCAGCCCAGCAGATGGCCCCGCATCCTGCGATGCAACAAGCGGGATATTACATGCAGCATCCTCAGGCTGCAGCGGCAATGGCTCAGCAACAGGGTCTTTTCCCTCAAAAGATGCAAATGCAGTTCAATAGCCCACATCAAATGCACGAATCACACCAGCAGTTACACCAACAAGCCATGCAAGGCCAGATGGGAATGAGACCTGGAGGGGCCAATGGCATGCCTTCAATGCATCATACTGAGAGCACCCATGGAGGAAGCAAGCAAGACAACTCAGAGGCTGGGACAGGTGGCGATGGCCATGGGAGCTCAGCTGGTGGGCACGGCAATGGTGACGGAGAAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

172

Amino Acids

18.51

Weight (kDa)

6.07

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	4 - 52	1.2e-18	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AciI	CCGC	3 cut(s)	188, 209, 242
AcoI	YGGCCR	1 cut(s)	466
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	104, 295, 396
AjnI	CCWGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	3 cut(s)	100, 477, 482
AluI	AGCT	3 cut(s)	100, 477, 482
Alw21I	GWGCWC	2 cut(s)	416, 479
Alw26I	GTCTC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	4 cut(s)	183, 352, 378, 466
ApeKI	GCWGC	4 cut(s)	125, 223, 236, 239
AspS9I	GGNCC	2 cut(s)	184, 378
AsuHPI	GGTGA	1 cut(s)	512
AxyI	CCTNAGG	1 cut(s)	231
BaeGI	GKGCMC	2 cut(s)	85, 492
BalI	TGGCCA	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	479
Bbv12I	GWGCWC	2 cut(s)	416, 479
BbvI	GCAGC	4 cut(s)	137, 223, 235, 251
BccI	CCATC	3 cut(s)	175, 352, 458
BceAI	ACGGC	1 cut(s)	508
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	5 cut(s)	126, 224, 237, 240, 243
BlpI	GCTNAGC	2 cut(s)	252, 478
BlsI	GCNGC	5 cut(s)	127, 225, 238, 241, 244
Bme1390I	CCNGG	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	184, 378
BmiI	GGNNCC	2 cut(s)	186, 379
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	6 cut(s)	127, 189, 199, 235, 270, 409
BmuI	ACTGGG	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	393
Bpu1102I	GCTNAGC	2 cut(s)	252, 478
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	3 cut(s)	61, 418, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	252, 502
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	3 cut(s)	61, 418, 469
BseGI	GGATG	2 cut(s)	190, 226
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	2 cut(s)	252, 502
BseMII	CTCAG	7 cut(s)	66, 110, 245, 266, 399, 456, 492
BseNI	ACTGG	1 cut(s)	85
BseSI	GKGCMC	2 cut(s)	85, 492
BseXI	GCAGC	4 cut(s)	137, 223, 235, 251
BseYI	CCCAGC	2 cut(s)	174, 449
BshFI	GGCC	4 cut(s)	185, 354, 380, 468
BsiHKAI	GWGCWC	2 cut(s)	416, 479
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	4 cut(s)	185, 354, 380, 468
Bso31I	GGTCTC	1 cut(s)	361
Bsp1286I	GDGCHC	4 cut(s)	85, 416, 479, 492
Bsp1720I	GCTNAGC	2 cut(s)	252, 478
Bsp19I	CCATGG	2 cut(s)	418, 469
BspACI	CCGC	3 cut(s)	188, 209, 242
BspANI	GGCC	4 cut(s)	185, 354, 380, 468
BspCNI	CTCAG	7 cut(s)	67, 109, 244, 265, 400, 455, 491
BspLI	GGNNCC	2 cut(s)	186, 379
BspMAI	CTGCAG	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	361
BsrDI	GCAATG	2 cut(s)	252, 502
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	3 cut(s)	61, 418, 469
BssT1I	CCWWGG	3 cut(s)	61, 418, 469
Bst2UI	CCWGG	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	171, 389, 431
BstDEI	CTNAG	7 cut(s)	75, 96, 231, 252, 408, 442, 478
BstDSI	CCRYGG	2 cut(s)	418, 469
BstF5I	GGATG	2 cut(s)	190, 226
BstMAI	GTCTC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 131, 175, 242, 248, 397, 474
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	2 cut(s)	223, 391
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	2 cut(s)	85, 492
BstV1I	GCAGC	4 cut(s)	137, 223, 235, 251
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	185, 354, 380, 468
BtgI	CCRYGG	2 cut(s)	418, 469
BtgZI	GCGATG	2 cut(s)	212, 477
BtsCI	GGATG	2 cut(s)	190, 226
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	171, 389, 431
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr13I	GGNCC	2 cut(s)	184, 378
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	5 cut(s)	220, 346, 388, 419, 470
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	7 cut(s)	75, 96, 231, 252, 408, 442, 478
EaeI	YGGCCR	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	3 cut(s)	61, 418, 469
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	477
Eco81I	CCTNAGG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	3 cut(s)	61, 418, 469
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	3 cut(s)	61, 418, 469
FaeI	CATG	5 cut(s)	223, 349, 391, 422, 473
FaiI	YATR	7 cut(s)	116, 221, 347, 389, 405, 420, 471
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	5 cut(s)	219, 345, 387, 418, 469
FauI	CCCGC	2 cut(s)	195, 202
Fnu4HI	GCNGC	5 cut(s)	126, 224, 237, 240, 243
FokI	GGATG	2 cut(s)	177, 213
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	5 cut(s)	126, 224, 237, 240, 243
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	5 cut(s)	126, 224, 237, 240, 243
GsaI	CCCAGC	2 cut(s)	178, 453
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	4 cut(s)	185, 354, 380, 468
Hin1II	CATG	5 cut(s)	223, 349, 391, 422, 473
HinfI	GANTC	3 cut(s)	34, 109, 317
HphI	GGTGA	1 cut(s)	512
Hpy188I	TCNGA	1 cut(s)	445
HpyAV	CCTTC	1 cut(s)	402
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 131, 175, 242, 248, 397, 474
HpyF3I	CTNAG	7 cut(s)	75, 96, 231, 252, 408, 442, 478
Hsp92II	CATG	5 cut(s)	223, 349, 391, 422, 473
LmnI	GCTCC	1 cut(s)	474
Lsp1109I	GCAGC	4 cut(s)	137, 223, 235, 251
LweI	GCATC	6 cut(s)	127, 189, 199, 235, 270, 409
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	330, 500
MfeI	CAATTG	1 cut(s)	129
MhlI	GDGCHC	4 cut(s)	85, 416, 479, 492
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	468
MnlI	CCTC	5 cut(s)	240, 282, 368, 416, 439
Mox20I	TGGCCA	1 cut(s)	468
Mph1103I	ATGCAT	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	468
MspA1I	CMGCKG	2 cut(s)	242, 482
MspR9I	CCNGG	1 cut(s)	372
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	7 cut(s)	80, 131, 175, 242, 248, 397, 474
NcoI	CCATGG	2 cut(s)	418, 469
NlaIII	CATG	5 cut(s)	223, 349, 391, 422, 473
NlaIV	GGNNCC	2 cut(s)	186, 379
NmuCI	GTSAC	1 cut(s)	500
NsiI	ATGCAT	1 cut(s)	402
NspI	RCATGY	2 cut(s)	223, 391
PaeI	GCATGC	1 cut(s)	391
PfeI	GAWTC	3 cut(s)	34, 109, 317
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	127, 225, 238, 241, 244
Psp124BI	GAGCTC	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	370
PspFI	CCCAGC	2 cut(s)	174, 449
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	186, 379
PspPI	GGNCC	2 cut(s)	184, 378
PstI	CTGCAG	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	449
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	479
SatI	GCNGC	5 cut(s)	126, 224, 237, 240, 243
Sau96I	GGNCC	2 cut(s)	184, 378
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	4 cut(s)	85, 416, 479, 492
SetI	ASST	6 cut(s)	63, 102, 373, 460, 479, 484
SfaNI	GCATC	6 cut(s)	127, 189, 199, 235, 270, 409
SfcI	CTRYAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	495
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	3 cut(s)	188, 209, 242
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	3 cut(s)	61, 418, 469
TasI	AATT	1 cut(s)	129
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	3 cut(s)	34, 109, 317
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	4 cut(s)	125, 223, 236, 239
Tsp45I	GTSAC	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	1 cut(s)	14
Van91I	CCANNNNNTGG	1 cut(s)	181
XceI	RCATGY	2 cut(s)	223, 391
XspI	CTAG	1 cut(s)	38
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.