Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Forward (+)

15108154 .. 15111201

Gene Structure 3048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027782

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCAGCAGCAGCCACAGCAAATGATGACCGGGATGCCTTCATTTCCACCCACTAACATCACCACCGAGCAAATTCAGAAGTGCCTTGATGAGAACAAAAAGTTGATTCTAGCAATATTGGACAATCAAAACCTTGGAAAACTTGCTGAGTGTGCCCAGTACCAAACTCAGCTTCAAAAGAATCTTATGTATTTAGCAGCAATTGCTGATGCTCAACCACAACCACAAGCACCAACAATGCCAGCCCAGCAGATGGCCCCGCATCCTGCGATGCAACAAGCGGGATATTACATGCAGCATCCTCAGGCTGCAGCGGCAATGGCTCAGCAACAGGGTCTTTTCCCTCAAAAGATGCAAATGCAGTTCAATAGCCCACATCAAATGCACGAATCACAGCAGCAGTTACACCAACAAGCCATGCAAGGCCAGATGGGAATGAGACCTGGAGGGGCCAATGGCATGCCTTCAATGCATCATACTGAGAGCACCCATGGAGGAAGCAAGCAAGACAACTCAGAGGCTGGGACAGGTGGCGATGGCCAGGGGAGCTCGGCAGGTGGGCACGGCAGTGGTGACGGAGAAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

197

Amino Acids

21.2

Weight (kDa)

5.93

Isoelectric Point (pI)

70.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	19 - 76	7.3e-23	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	545
Acc36I	ACCTGC	1 cut(s)	545
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	3 cut(s)	260, 281, 314
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	72
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	176, 367, 468
AjnI	CCWGG	2 cut(s)	442, 540
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AleI	CACNNNNGTG	1 cut(s)	567
AluBI	AGCT	2 cut(s)	172, 549
AluI	AGCT	2 cut(s)	172, 549
Alw21I	GWGCWC	2 cut(s)	488, 551
Alw26I	GTCTC	1 cut(s)	433
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	4 cut(s)	255, 424, 450, 538
ApeKI	GCWGC	8 cut(s)	4, 7, 10, 197, 295, 308, 311, 397
ApoI	RAATTY	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	256, 450
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	52, 584
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	2 cut(s)	157, 564
BalI	TGGCCA	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	551
Bbv12I	GWGCWC	2 cut(s)	488, 551
BbvI	GCAGC	8 cut(s)	16, 19, 22, 209, 295, 307, 323, 409
BccI	CCATC	3 cut(s)	247, 424, 530
BceAI	ACGGC	1 cut(s)	580
BciT130I	CCWGG	2 cut(s)	444, 542
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	545
BisI	GCNGC	9 cut(s)	5, 8, 11, 198, 296, 309, 312, 315, 398
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	9 cut(s)	6, 9, 12, 199, 297, 310, 313, 316, 399
Bme1390I	CCNGG	3 cut(s)	31, 444, 542
BmgT120I	GGNCC	2 cut(s)	256, 450
BmiI	GGNNCC	2 cut(s)	258, 451
BmrFI	CCNGG	3 cut(s)	31, 444, 542
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	7 cut(s)	24, 199, 261, 271, 307, 342, 481
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	3 cut(s)	133, 490, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	157
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	444, 542
BseDI	CCNNGG	3 cut(s)	133, 490, 541
BseGI	GGATG	3 cut(s)	39, 262, 298
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	6 cut(s)	138, 182, 317, 338, 471, 528
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	2 cut(s)	157, 564
BseXI	GCAGC	8 cut(s)	16, 19, 22, 209, 295, 307, 323, 409
BseYI	CCCAGC	2 cut(s)	246, 521
BshFI	GGCC	4 cut(s)	257, 426, 452, 540
BsiHKAI	GWGCWC	2 cut(s)	488, 551
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	538
BsnI	GGCC	4 cut(s)	257, 426, 452, 540
Bso31I	GGTCTC	1 cut(s)	433
Bsp1286I	GDGCHC	4 cut(s)	157, 488, 551, 564
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	3 cut(s)	260, 281, 314
BspANI	GGCC	4 cut(s)	257, 426, 452, 540
BspCNI	CTCAG	6 cut(s)	139, 181, 316, 337, 472, 527
BspLI	GGNNCC	2 cut(s)	258, 451
BspMAI	CTGCAG	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	3 cut(s)	133, 490, 541
BssT1I	CCWWGG	2 cut(s)	133, 490
Bst2UI	CCWGG	2 cut(s)	444, 542
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	3 cut(s)	243, 461, 503
BstDEI	CTNAG	6 cut(s)	147, 168, 303, 324, 480, 514
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	3 cut(s)	39, 262, 298
BstMAI	GTCTC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 16, 152, 203, 247, 314, 320, 469, 546
BstNI	CCWGG	2 cut(s)	444, 542
BstNSI	RCATGY	2 cut(s)	295, 463
BstSCI	CCNGG	3 cut(s)	29, 442, 540
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	2 cut(s)	157, 564
BstV1I	GCAGC	8 cut(s)	16, 19, 22, 209, 295, 307, 323, 409
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	4 cut(s)	257, 426, 452, 540
BtgI	CCRYGG	1 cut(s)	490
BtgZI	GCGATG	2 cut(s)	284, 549
BtsCI	GGATG	3 cut(s)	39, 262, 298
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	1 cut(s)	574
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	3 cut(s)	243, 461, 503
CaiI	CAGNNNCTG	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	256, 450
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	4 cut(s)	292, 418, 460, 491
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	6 cut(s)	147, 168, 303, 324, 480, 514
EaeI	YGGCCR	1 cut(s)	538
Ecl136II	GAGCTC	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	133, 490
Eco24I	GRGCYC	1 cut(s)	551
Eco31I	GGTCTC	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	549
Eco81I	CCTNAGG	1 cut(s)	303
EcoICRI	GAGCTC	1 cut(s)	549
EcoRII	CCWGG	2 cut(s)	442, 540
EcoT14I	CCWWGG	2 cut(s)	133, 490
EcoT22I	ATGCAT	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	551
ErhI	CCWWGG	2 cut(s)	133, 490
FaeI	CATG	4 cut(s)	295, 421, 463, 494
FaiI	YATR	6 cut(s)	188, 293, 419, 461, 477, 492
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	4 cut(s)	291, 417, 459, 490
FauI	CCCGC	2 cut(s)	267, 274
Fnu4HI	GCNGC	9 cut(s)	5, 8, 11, 198, 296, 309, 312, 315, 398
FokI	GGATG	3 cut(s)	46, 249, 285
FriOI	GRGCYC	1 cut(s)	551
Fsp4HI	GCNGC	9 cut(s)	5, 8, 11, 198, 296, 309, 312, 315, 398
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	9 cut(s)	5, 8, 11, 198, 296, 309, 312, 315, 398
GsaI	CCCAGC	2 cut(s)	250, 525
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	4 cut(s)	257, 426, 452, 540
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	4 cut(s)	295, 421, 463, 494
HinfI	GANTC	3 cut(s)	106, 181, 389
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	52, 584
Hpy188I	TCNGA	2 cut(s)	78, 517
HpyAV	CCTTC	2 cut(s)	48, 474
HpyCH4V	TGCA	9 cut(s)	4, 274, 295, 311, 355, 361, 385, 421, 472
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 16, 152, 203, 247, 314, 320, 469, 546
HpyF3I	CTNAG	6 cut(s)	147, 168, 303, 324, 480, 514
Hsp92II	CATG	4 cut(s)	295, 421, 463, 494
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	8 cut(s)	16, 19, 22, 209, 295, 307, 323, 409
LweI	GCATC	7 cut(s)	24, 199, 261, 271, 307, 342, 481
MaeI	CTAG	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	402, 572
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	4 cut(s)	157, 488, 551, 564
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	2 cut(s)	72, 201
MluNI	TGGCCA	1 cut(s)	540
MnlI	CCTC	5 cut(s)	312, 354, 440, 488, 511
Mox20I	TGGCCA	1 cut(s)	540
Mph1103I	ATGCAT	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	3 cut(s)	31, 444, 542
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	444, 542
MwoI	GCNNNNNNNGC	9 cut(s)	10, 16, 152, 203, 247, 314, 320, 469, 546
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	490
NlaIII	CATG	4 cut(s)	295, 421, 463, 494
NlaIV	GGNNCC	2 cut(s)	258, 451
NmeAIII	GCCGAG	1 cut(s)	530
NmuCI	GTSAC	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	474
NspI	RCATGY	2 cut(s)	295, 463
OliI	CACNNNNGTG	1 cut(s)	567
PaeI	GCATGC	1 cut(s)	463
PaqCI	CACCTGC	1 cut(s)	545
PfeI	GAWTC	3 cut(s)	106, 181, 389
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	9 cut(s)	6, 9, 12, 199, 297, 310, 313, 316, 399
Psp124BI	GAGCTC	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	442, 540
PspFI	CCCAGC	2 cut(s)	246, 521
PspGI	CCWGG	2 cut(s)	442, 540
PspN4I	GGNNCC	2 cut(s)	258, 451
PspPI	GGNCC	2 cut(s)	256, 450
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	551
SatI	GCNGC	9 cut(s)	5, 8, 11, 198, 296, 309, 312, 315, 398
Sau96I	GGNCC	2 cut(s)	256, 450
ScrFI	CCNGG	3 cut(s)	31, 444, 542
SduI	GDGCHC	4 cut(s)	157, 488, 551, 564
SetI	ASST	6 cut(s)	135, 174, 445, 532, 551, 559
SfaNI	GCATC	7 cut(s)	24, 199, 261, 271, 307, 342, 481
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	567
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	2 cut(s)	72, 201
SsiI	CCGC	3 cut(s)	260, 281, 314
SspI	AATATT	1 cut(s)	117
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	551
StyD4I	CCNGG	3 cut(s)	29, 442, 540
StyI	CCWWGG	2 cut(s)	133, 490
TasI	AATT	2 cut(s)	72, 201
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	3 cut(s)	106, 181, 389
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	8 cut(s)	4, 7, 10, 197, 295, 308, 311, 397
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	591
TspRI	CASTG	1 cut(s)	574
Van91I	CCANNNNNTGG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	72
XceI	RCATGY	2 cut(s)	295, 463
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.