Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

22841452 .. 22846035

Gene Structure 4584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1157200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCAGCAGCCACCACAAATGATCCCCGTCATGCCTTCATTTCCTCCCACCAACATCACCACCGAACAAATTCAGAAGTACCTTGATGACAACAAAAAGTTGATTCTGGCAATATTGGATAATCAAAATCTTGGAAAACTTGCTGAGTGTGCTCAGTACCAGGCTCTGCTTCAAAAGAATCTGATGTATTTAGCAGCAATTGCCGATGCGCAACCACAGGCCACAGCTGCCCCTCCCCAGATGGCCCCACATCCTGCTATGCAACAGGCAGGATATTACATGCAACATCCTCAGGCAGCAGCAATGGCTCAGCAACAGGGTATTTTCTCCCCAAAGATGCCGATGCAATTCAATAACATGCATCAAATGCACGATCCACAGCAGCACCAACAAGCCATGCAAGGGCAAATGGGAATGAGACCTGGAGGGCCTAACGGCATGCCTTCCATGCTTCATACTGAGGCCACACATGGTGGTGGTAGTGGCGGCCCAAATTCAGCTGGAGACCCAAATGATGGGCGTGGAGGAAGCAAGCAAGACGCCTCTGAGTCTGGGGCAGGTGGTGATGGCCAGGGGACCTCAGCCGGCGGGCGTGGAAATGGTGATGGAGAGGACGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

208

Amino Acids

21.82

Weight (kDa)

5.71

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSXT	PF05030	18 - 73	7e-21	SSXT protein (N-terminal region)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	548
Acc16I	TGCGCA	1 cut(s)	210
Acc36I	ACCTGC	1 cut(s)	548
AccB7I	CCANNNNNTGG	1 cut(s)	515
AciI	CCGC	2 cut(s)	486, 588
AclWI	GGATC	2 cut(s)	16, 368
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	2 cut(s)	69, 493
AcyI	GRCGYC	1 cut(s)	540
AdeI	CACNNNGTG	1 cut(s)	473
AfaI	GTAC	2 cut(s)	80, 158
AfiI	CCNNNNNNNGG	2 cut(s)	402, 515
AgsI	TTSAA	2 cut(s)	173, 352
AjnI	CCWGG	3 cut(s)	159, 421, 570
AluBI	AGCT	2 cut(s)	227, 500
AluI	AGCT	2 cut(s)	227, 500
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	412, 498
AlwI	GGATC	2 cut(s)	16, 368
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	6 cut(s)	219, 243, 428, 462, 487, 568
ApeKI	GCWGC	7 cut(s)	4, 7, 194, 227, 296, 299, 382
ApoI	RAATTY	2 cut(s)	69, 493
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	4 cut(s)	244, 428, 488, 576
AsuHPI	GGTGA	3 cut(s)	49, 575, 614
AvaII	GGWCC	1 cut(s)	576
AxyI	CCTNAGG	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	570
Bbv12I	GWGCWC	1 cut(s)	154
BbvCI	CCTCAGC	1 cut(s)	580
BbvI	GCAGC	7 cut(s)	16, 19, 206, 214, 308, 311, 394
BccI	CCATC	4 cut(s)	235, 509, 560, 599
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	3 cut(s)	161, 423, 572
BcoDI	GTCTC	2 cut(s)	412, 498
BfuAI	ACCTGC	1 cut(s)	548
BisI	GCNGC	8 cut(s)	5, 8, 195, 228, 297, 300, 383, 487
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	8 cut(s)	6, 9, 196, 229, 298, 301, 384, 488
Bme1390I	CCNGG	3 cut(s)	161, 423, 572
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	4 cut(s)	244, 428, 488, 576
BmiI	GGNNCC	2 cut(s)	246, 577
BmrFI	CCNGG	3 cut(s)	161, 423, 572
BmsI	GCATC	4 cut(s)	196, 327, 333, 370
BpmI	CTGGAG	2 cut(s)	444, 522
Bpu10I	CCTNAGC	1 cut(s)	580
Bpu1102I	GCTNAGC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	540
BsaI	GGTCTC	2 cut(s)	412, 498
BsaJI	CCNNGG	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 515
Bse118I	RCCGGY	1 cut(s)	584
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	3 cut(s)	161, 423, 572
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	2 cut(s)	250, 286
BseLI	CCNNNNNNNGG	2 cut(s)	402, 515
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	7 cut(s)	135, 167, 305, 323, 450, 537, 594
BseXI	GCAGC	7 cut(s)	16, 19, 206, 214, 308, 311, 394
BshFI	GGCC	6 cut(s)	221, 245, 430, 464, 489, 570
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	2 cut(s)	402, 515
BsmAI	GTCTC	2 cut(s)	412, 498
BsmFI	GGGAC	1 cut(s)	589
BsnI	GGCC	6 cut(s)	221, 245, 430, 464, 489, 570
Bso31I	GGTCTC	2 cut(s)	412, 498
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	21, 373
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	2 cut(s)	486, 588
BspANI	GGCC	6 cut(s)	221, 245, 430, 464, 489, 570
BspCNI	CTCAG	7 cut(s)	136, 166, 304, 322, 451, 538, 593
BspLI	GGNNCC	2 cut(s)	246, 577
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	16, 368
BspTNI	GGTCTC	2 cut(s)	412, 498
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	584
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	2 cut(s)	21, 373
BssNI	GRCGYC	1 cut(s)	540
Bst2UI	CCWGG	3 cut(s)	161, 423, 572
BstACI	GRCGYC	1 cut(s)	540
BstAPI	GCANNNNNTGC	2 cut(s)	200, 367
BstC8I	GCNNGC	4 cut(s)	440, 533, 586, 590
BstDEI	CTNAG	7 cut(s)	144, 153, 291, 309, 459, 546, 580
BstF5I	GGATG	2 cut(s)	250, 286
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	2 cut(s)	24, 376
BstMAI	GTCTC	2 cut(s)	412, 498
BstMBI	GATC	2 cut(s)	21, 373
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 200, 227, 305, 367, 448
BstNI	CCWGG	3 cut(s)	161, 423, 572
BstNSI	RCATGY	3 cut(s)	283, 361, 442
BstSCI	CCNGG	3 cut(s)	159, 421, 570
BstV1I	GCAGC	7 cut(s)	16, 19, 206, 214, 308, 311, 394
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	6 cut(s)	221, 245, 430, 464, 489, 570
BtsCI	GGATG	2 cut(s)	250, 286
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	4 cut(s)	440, 533, 586, 590
CaiI	CAGNNNCTG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	4 cut(s)	244, 428, 488, 576
CseI	GACGC	1 cut(s)	548
Csp6I	GTAC	2 cut(s)	79, 157
CviAII	CATG	7 cut(s)	31, 280, 358, 397, 439, 448, 470
CviQI	GTAC	2 cut(s)	79, 157
DdeI	CTNAG	7 cut(s)	144, 153, 291, 309, 459, 546, 580
DpnI	GATC	2 cut(s)	23, 375
DpnII	GATC	2 cut(s)	21, 373
DraIII	CACNNNGTG	1 cut(s)	473
EaeI	YGGCCR	1 cut(s)	568
Eco31I	GGTCTC	2 cut(s)	412, 498
Eco47I	GGWCC	1 cut(s)	576
Eco81I	CCTNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	2 cut(s)	428, 576
EcoRII	CCWGG	3 cut(s)	159, 421, 570
EcoT22I	ATGCAT	1 cut(s)	363
FaeI	CATG	7 cut(s)	34, 283, 361, 400, 442, 451, 473
FaiI	YATR	9 cut(s)	32, 260, 281, 359, 398, 440, 449, 456, 471
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	7 cut(s)	30, 279, 357, 396, 438, 447, 469
FauI	CCCGC	1 cut(s)	581
Fnu4HI	GCNGC	8 cut(s)	5, 8, 195, 228, 297, 300, 383, 487
FokI	GGATG	2 cut(s)	237, 273
Fsp4HI	GCNGC	8 cut(s)	5, 8, 195, 228, 297, 300, 383, 487
FspI	TGCGCA	1 cut(s)	210
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	8 cut(s)	5, 8, 195, 228, 297, 300, 383, 487
GsuI	CTGGAG	2 cut(s)	444, 522
HaeIII	GGCC	6 cut(s)	221, 245, 430, 464, 489, 570
HapII	CCGG	1 cut(s)	585
HgaI	GACGC	1 cut(s)	548
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	7 cut(s)	34, 283, 361, 400, 442, 451, 473
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	3 cut(s)	103, 178, 548
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	3 cut(s)	49, 575, 614
Hpy188I	TCNGA	3 cut(s)	75, 183, 547
HpyAV	CCTTC	2 cut(s)	45, 453
HpyCH4V	TGCA	7 cut(s)	4, 262, 283, 346, 361, 370, 400
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 200, 227, 305, 367, 448
HpyF3I	CTNAG	7 cut(s)	144, 153, 291, 309, 459, 546, 580
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	7 cut(s)	34, 283, 361, 400, 442, 451, 473
HspAI	GCGC	1 cut(s)	209
KroI	GCCGGC	1 cut(s)	584
KroNI	GCCGGC	1 cut(s)	586
Kzo9I	GATC	2 cut(s)	21, 373
Lsp1109I	GCAGC	7 cut(s)	16, 19, 206, 214, 308, 311, 394
LweI	GCATC	4 cut(s)	196, 327, 333, 370
MalI	GATC	2 cut(s)	23, 375
MboI	GATC	2 cut(s)	21, 373
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	4 cut(s)	69, 198, 347, 493
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	1 cut(s)	557
MnlI	CCTC	9 cut(s)	54, 243, 300, 419, 454, 518, 553, 589, 604
Mox20I	TGGCCA	1 cut(s)	570
Mph1103I	ATGCAT	1 cut(s)	363
MroNI	GCCGGC	1 cut(s)	584
MroXI	GAANNNNTTC	1 cut(s)	69
MscI	TGGCCA	1 cut(s)	570
MslI	CAYNNNNRTG	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	570
MspA1I	CMGCKG	2 cut(s)	227, 500
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	3 cut(s)	161, 423, 572
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	3 cut(s)	161, 423, 572
MwoI	GCNNNNNNNGC	6 cut(s)	149, 200, 227, 305, 367, 448
NaeI	GCCGGC	1 cut(s)	586
NdeII	GATC	2 cut(s)	21, 373
NgoMIV	GCCGGC	1 cut(s)	584
NlaIII	CATG	7 cut(s)	34, 283, 361, 400, 442, 451, 473
NlaIV	GGNNCC	2 cut(s)	246, 577
NsbI	TGCGCA	1 cut(s)	210
NsiI	ATGCAT	1 cut(s)	363
NspI	RCATGY	3 cut(s)	283, 361, 442
PaeI	GCATGC	1 cut(s)	442
PaqCI	CACCTGC	1 cut(s)	548
PdiI	GCCGGC	1 cut(s)	586
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	103, 178
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	8 cut(s)	6, 9, 196, 229, 298, 301, 384, 488
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
PpuMI	RGGWCCY	1 cut(s)	576
Psp5II	RGGWCCY	1 cut(s)	576
Psp6I	CCWGG	3 cut(s)	159, 421, 570
PspGI	CCWGG	3 cut(s)	159, 421, 570
PspN4I	GGNNCC	2 cut(s)	246, 577
PspPI	GGNCC	4 cut(s)	244, 428, 488, 576
PspPPI	RGGWCCY	1 cut(s)	576
PstNI	CAGNNNCTG	1 cut(s)	166
PvuII	CAGCTG	2 cut(s)	227, 500
RsaI	GTAC	2 cut(s)	80, 158
RsaNI	GTAC	2 cut(s)	79, 157
RseI	CAYNNNNRTG	1 cut(s)	474
SatI	GCNGC	8 cut(s)	5, 8, 195, 228, 297, 300, 383, 487
Sau3AI	GATC	2 cut(s)	21, 373
Sau96I	GGNCC	4 cut(s)	244, 428, 488, 576
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	3 cut(s)	161, 423, 572
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	6 cut(s)	84, 229, 424, 502, 562, 581
SfaNI	GCATC	4 cut(s)	196, 327, 333, 370
SinI	GGWCC	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	474
SphI	GCATGC	1 cut(s)	442
Sse9I	AATT	4 cut(s)	69, 198, 347, 493
SsiI	CCGC	2 cut(s)	486, 588
SspI	AATATT	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	159, 421, 570
TasI	AATT	4 cut(s)	69, 198, 347, 493
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	103, 178
TseI	GCWGC	7 cut(s)	4, 7, 194, 227, 296, 299, 382
TspDTI	ATGAA	2 cut(s)	27, 443
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	2 cut(s)	69, 493
XceI	RCATGY	3 cut(s)	283, 361, 442
XmnI	GAANNNNTTC	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.