Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

39510353 .. 39510877

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0282200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAACTACGCCAATCTCATCTTTCAACACACCCCCAACCCCAACATCCTCCTCTTCAACTCCATGATCAAGGGCATCTCGCTCTGCCACCCATTCGAAAAATCCGTCTCCATTTTCTCCCATATGAAACGCCGCGGCGTTTGGCCCAACGAGTACACTTTTGCGCCTTTACTGAAGTCCTGCTCCGACATGTCTTATTATAGGGTAGACCAGTGTGTGCATGGAGAGGTTTTGAGAATGGGGTTTGAGTGGTTTGGTTCAGTTAGGGATGGGATCATTGAGCTGTATGTGACTTGTGGGAGGGTGGGTGATGCACAAAAGGTGTTCGATGAAATGTCTAAAAGAGATGTGATTGTTTGGAATTTGATGATTCGTGGGTTTTGCAAGAGTGGCAATGTCGATACTGGGTTGTGTTTGTTTAGGAAGATGGGTGAGAGGAATGTTGTTTTGTGGAACTCGATGATTTCGTGCTTAGCGCAGTGTGGGAGGGACAGTGAAGCTTTGGGGTTTTTTAATGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

174

Amino Acids

19.96

Weight (kDa)

8.12

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	14 - 62	3.7e-08	PPR repeat family
PPR_1	PF12854	114 - 143	8e-07	PPR repeat
PPR_2	PF13041	115 - 148	3.3e-07	PPR repeat family
PPR	PF01535	119 - 148	1.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	133, 135
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	283, 500
AluI	AGCT	2 cut(s)	283, 500
Alw26I	GTCTC	2 cut(s)	112, 512
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AspLEI	GCGC	2 cut(s)	166, 478
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	320, 443
AsuII	TTCGAA	1 cut(s)	96
BccI	CCATC	2 cut(s)	263, 421
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	112, 512
BisI	GCNGC	2 cut(s)	133, 136
BlpI	GCTNAGC	1 cut(s)	472
BlsI	GCNGC	2 cut(s)	134, 137
BmgT120I	GGNCC	1 cut(s)	144
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	84, 301
BmuI	ACTGGG	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	472
Bpu14I	TTCGAA	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	133
BsaXI	ACNNNNNCTCC	4 cut(s)	292, 322, 478, 508
Bse1I	ACTGG	2 cut(s)	211, 409
Bse3DI	GCAATG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	45, 274
BseMI	GCAATG	1 cut(s)	400
BseNI	ACTGG	2 cut(s)	211, 409
BseRI	GAGGAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	503
BsmAI	GTCTC	2 cut(s)	112, 512
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	145
Bsp119I	TTCGAA	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	66, 273
Bsp1720I	GCTNAGC	1 cut(s)	472
BspACI	CCGC	2 cut(s)	133, 135
BspANI	GGCC	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	135
BspPI	GGATC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	211, 409
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	66, 273
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	472
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	45, 274
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	166, 478
BstKTI	GATC	2 cut(s)	69, 276
BstMAI	GTCTC	2 cut(s)	112, 512
BstMBI	GATC	2 cut(s)	66, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	193
BstUI	CGCG	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	45, 274
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	3 cut(s)	218, 485, 499
CfoI	GCGC	2 cut(s)	166, 478
Cfr13I	GGNCC	1 cut(s)	144
Cfr42I	CCGCGG	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	4 cut(s)	64, 190, 221, 522
CviJI	RGCY	3 cut(s)	145, 283, 500
CviKI_1	RGCY	3 cut(s)	145, 283, 500
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	472
DpnI	GATC	2 cut(s)	68, 275
DpnII	GATC	2 cut(s)	66, 273
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	194
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	4 cut(s)	67, 193, 224, 525
FaiI	YATR	8 cut(s)	65, 123, 125, 191, 201, 222, 288, 523
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	4 cut(s)	63, 189, 220, 521
FauNDI	CATATG	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	133, 136
FokI	GGATG	2 cut(s)	32, 281
Fsp4HI	GCNGC	2 cut(s)	133, 136
GlaI	GCGC	2 cut(s)	165, 477
GluI	GCNGC	2 cut(s)	133, 136
HaeIII	GGCC	1 cut(s)	145
HhaI	GCGC	2 cut(s)	166, 478
Hin1II	CATG	4 cut(s)	67, 193, 224, 525
Hin6I	GCGC	2 cut(s)	164, 476
HinP1I	GCGC	2 cut(s)	164, 476
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	1 cut(s)	370
HphI	GGTGA	2 cut(s)	320, 443
Hpy166II	GTNNAC	2 cut(s)	156, 208
Hpy188I	TCNGA	1 cut(s)	187
Hpy8I	GTNNAC	2 cut(s)	156, 208
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	3 cut(s)	220, 314, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	1 cut(s)	472
Hsp92II	CATG	4 cut(s)	67, 193, 224, 525
HspAI	GCGC	2 cut(s)	164, 476
Ksp22I	TGATCA	1 cut(s)	66
KspI	CCGCGG	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	66, 273
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	3 cut(s)	193, 224, 390
LweI	GCATC	2 cut(s)	84, 301
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	2 cut(s)	68, 275
MboI	GATC	2 cut(s)	66, 273
MboII	GAAGA	2 cut(s)	46, 436
MluCI	AATT	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	59, 62, 220, 294, 429, 480
MseI	TTAA	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	390
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	2 cut(s)	66, 273
NlaIII	CATG	4 cut(s)	67, 193, 224, 525
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	96
PciI	ACATGT	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 464
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	134, 137
PscI	ACATGT	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	144
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SacII	CCGCGG	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	2 cut(s)	133, 136
Sau3AI	GATC	2 cut(s)	66, 273
Sau96I	GGNCC	1 cut(s)	144
SetI	ASST	4 cut(s)	231, 285, 324, 502
SfaNI	GCATC	2 cut(s)	84, 301
Sfr303I	CCGCGG	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	136
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	2 cut(s)	133, 135
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	4 cut(s)	96, 327, 399, 458
TasI	AATT	1 cut(s)	361
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	2 cut(s)	135, 138
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	3 cut(s)	218, 485, 499
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	17, 140, 345
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	3 cut(s)	218, 485, 499
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.