Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006105

Physical Location & Seq

Genomic Coordinates Reverse (-)

17683559 .. 17686834

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCAGCAGCCACCGCAAATGATCCCCGTCATGCCTTCACTTCCTCCCACCAACATCACCACCGAGCAAATTCAGAAGTACCTTGATGACAACAAAAAGTTGATTCTGGCAATATTGGATAATCAAAATCTTGGAAAACTTGCTGAGTGTGCTCAGTACCAGGCTCTGCTTCAAAAGAATCTGATGTATTTAGCAGCAATTGCTGATGCGCAACCACAGGCACCAGCTGCGCCTCCCCAGATGGCCCCACATCCTGCTATGCAACAGGCGGGATATTACATGCAACATCCTCAGGCAGCAGCAATGGCTCAGCAACAGGGTATTTTCTCCCCAAAGATGCCGATGCAGTTTAATAACATGCATCAAATGCACGATCCACAGCAGCACCAACAAGCCATGCAAGGGCAAATGGGAATGAGACCTGGAGGGCCTAATGGCATGCCTTCCATGCATCATACTGAGGCCACACATGGTGGTGGTAGTGGCGGCCCAAATTCAGCTGGAGGCCCAAATGATGGGCGTGGACGAAGCAAAGACGCCTCAGAGTCTGGGGCAGGTGGTGATGGCCAGGGGACCTCAGCCGGTGGGCATGGAAACGGTGATGGAGAGGACGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0008283 GO:0009889 GO:0009891 GO:0009893 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSXT

Protein Analysis

207

Amino Acids

21.7

Weight (kDa)

6.09

Isoelectric Point (pI)

66.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01160 AT1G01160 AT4G00850 AT4G00850
fragaria_vesca	FvH4_7g17400 FvH4_7g17400 FvH4_7g17400
malus_domestica	MD01G1087000.v1.1 MD07G1157100.v1.1 MD07G1157200.v1.1
prunus_persica	Prupe.2G195600_v2.0.a1
pyrus_communis	pycom01g11090 pycom07g15360 pycom07g15380
rosa_chinensis	RchiOBHm_Chr1g0360841
rosa_laevigata	RLG00000027782
rosa_multiflora	Rmu_ssc0000022.1_g000047
rosa_roxburghii	Rroxscaffold_4G00295770
rosa_rugosa	Rorug01G0282000 Rorug01G0282100 Rorug01G0282100 Rorug01G0282200
rosa_samantha	Rh1AG293900 Rh1BG258700 Rh1CG276300 Rh1DG288900
rosa_wichuraiana	Rw1G026010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	545
Acc16I	TGCGCA	1 cut(s)	210
Acc36I	ACCTGC	1 cut(s)	545
AccB1I	GGYRCC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	515
AciI	CCGC	3 cut(s)	14, 269, 486
AclWI	GGATC	2 cut(s)	16, 368
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	2 cut(s)	69, 493
AcyI	GRCGYC	1 cut(s)	537
AdeI	CACNNNGTG	1 cut(s)	473
AfaI	GTAC	2 cut(s)	80, 158
AfiI	CCNNNNNNNGG	2 cut(s)	402, 515
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	3 cut(s)	159, 421, 567
AluBI	AGCT	2 cut(s)	227, 500
AluI	AGCT	2 cut(s)	227, 500
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	2 cut(s)	16, 368
AlwNI	CAGNNNCTG	2 cut(s)	166, 548
AoxI	GGCC	6 cut(s)	243, 428, 462, 487, 505, 565
ApeKI	GCWGC	7 cut(s)	4, 7, 194, 227, 296, 299, 382
ApoI	RAATTY	2 cut(s)	69, 493
AspLEI	GCGC	2 cut(s)	211, 232
AspS9I	GGNCC	5 cut(s)	244, 428, 488, 506, 573
AsuHPI	GGTGA	3 cut(s)	49, 572, 611
AvaII	GGWCC	1 cut(s)	573
AxyI	CCTNAGG	1 cut(s)	291
BalI	TGGCCA	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	154
BbvCI	CCTCAGC	1 cut(s)	577
BbvI	GCAGC	7 cut(s)	16, 19, 206, 214, 308, 311, 394
BccI	CCATC	4 cut(s)	235, 509, 557, 596
BciT130I	CCWGG	3 cut(s)	161, 423, 569
BcoDI	GTCTC	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	545
BisI	GCNGC	8 cut(s)	5, 8, 195, 228, 297, 300, 383, 487
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	8 cut(s)	6, 9, 196, 229, 298, 301, 384, 488
Bme1390I	CCNGG	3 cut(s)	161, 423, 569
Bme18I	GGWCC	1 cut(s)	573
BmgT120I	GGNCC	5 cut(s)	244, 428, 488, 506, 573
BmiI	GGNNCC	3 cut(s)	222, 246, 574
BmrFI	CCNGG	3 cut(s)	161, 423, 569
BmsI	GCATC	5 cut(s)	196, 327, 333, 370, 460
BpmI	CTGGAG	2 cut(s)	444, 522
Bpu10I	CCTNAGC	1 cut(s)	577
Bpu1102I	GCTNAGC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	2 cut(s)	402, 515
Bse118I	RCCGGY	1 cut(s)	581
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	3 cut(s)	161, 423, 569
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	2 cut(s)	250, 286
BseLI	CCNNNNNNNGG	2 cut(s)	402, 515
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	7 cut(s)	135, 167, 305, 323, 450, 555, 591
BseXI	GCAGC	7 cut(s)	16, 19, 206, 214, 308, 311, 394
BshFI	GGCC	6 cut(s)	245, 430, 464, 489, 507, 567
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	2 cut(s)	402, 515
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	586
BsnI	GGCC	6 cut(s)	245, 430, 464, 489, 507, 567
Bso31I	GGTCTC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	21, 373
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	3 cut(s)	14, 269, 486
BspANI	GGCC	6 cut(s)	245, 430, 464, 489, 507, 567
BspCNI	CTCAG	7 cut(s)	136, 166, 304, 322, 451, 554, 590
BspLI	GGNNCC	3 cut(s)	222, 246, 574
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	2 cut(s)	16, 368
BspT107I	GGYRCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	581
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	2 cut(s)	21, 373
BssNI	GRCGYC	1 cut(s)	537
Bst2UI	CCWGG	3 cut(s)	161, 423, 569
Bst4CI	ACNGT	1 cut(s)	599
BstACI	GRCGYC	1 cut(s)	537
BstAPI	GCANNNNNTGC	3 cut(s)	200, 227, 367
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	7 cut(s)	144, 153, 291, 309, 459, 541, 577
BstF5I	GGATG	2 cut(s)	250, 286
BstHHI	GCGC	2 cut(s)	211, 232
BstKTI	GATC	2 cut(s)	24, 376
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	2 cut(s)	21, 373
BstMWI	GCNNNNNNNGC	7 cut(s)	13, 149, 200, 227, 305, 367, 448
BstNI	CCWGG	3 cut(s)	161, 423, 569
BstNSI	RCATGY	3 cut(s)	283, 361, 442
BstSCI	CCNGG	3 cut(s)	159, 421, 567
BstV1I	GCAGC	7 cut(s)	16, 19, 206, 214, 308, 311, 394
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	6 cut(s)	245, 430, 464, 489, 507, 567
BtsCI	GGATG	2 cut(s)	250, 286
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	1 cut(s)	440
CaiI	CAGNNNCTG	2 cut(s)	166, 548
CfoI	GCGC	2 cut(s)	211, 232
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	5 cut(s)	244, 428, 488, 506, 573
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	79, 157
CviAII	CATG	8 cut(s)	31, 280, 358, 397, 439, 448, 470, 590
CviQI	GTAC	2 cut(s)	79, 157
DdeI	CTNAG	7 cut(s)	144, 153, 291, 309, 459, 541, 577
DpnI	GATC	2 cut(s)	23, 375
DpnII	GATC	2 cut(s)	21, 373
DraIII	CACNNNGTG	1 cut(s)	473
EaeI	YGGCCR	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	573
Eco81I	CCTNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	2 cut(s)	428, 573
EcoRII	CCWGG	3 cut(s)	159, 421, 567
EcoT22I	ATGCAT	2 cut(s)	363, 453
FaeI	CATG	8 cut(s)	34, 283, 361, 400, 442, 451, 473, 593
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	8 cut(s)	30, 279, 357, 396, 438, 447, 469, 589
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	8 cut(s)	5, 8, 195, 228, 297, 300, 383, 487
FokI	GGATG	2 cut(s)	237, 273
Fsp4HI	GCNGC	8 cut(s)	5, 8, 195, 228, 297, 300, 383, 487
FspI	TGCGCA	1 cut(s)	210
GlaI	GCGC	2 cut(s)	210, 231
GluI	GCNGC	8 cut(s)	5, 8, 195, 228, 297, 300, 383, 487
GsuI	CTGGAG	2 cut(s)	444, 522
HaeIII	GGCC	6 cut(s)	245, 430, 464, 489, 507, 567
HapII	CCGG	1 cut(s)	582
HgaI	GACGC	1 cut(s)	545
HhaI	GCGC	2 cut(s)	211, 232
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	8 cut(s)	34, 283, 361, 400, 442, 451, 473, 593
Hin6I	GCGC	2 cut(s)	209, 230
HinP1I	GCGC	2 cut(s)	209, 230
HinfI	GANTC	3 cut(s)	103, 178, 545
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	3 cut(s)	49, 572, 611
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	3 cut(s)	75, 183, 544
Hpy8I	GTNNAC	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	45, 453
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4V	TGCA	8 cut(s)	4, 262, 283, 346, 361, 370, 400, 451
HpyF10VI	GCNNNNNNNGC	7 cut(s)	13, 149, 200, 227, 305, 367, 448
HpyF3I	CTNAG	7 cut(s)	144, 153, 291, 309, 459, 541, 577
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	8 cut(s)	34, 283, 361, 400, 442, 451, 473, 593
HspAI	GCGC	2 cut(s)	209, 230
Kzo9I	GATC	2 cut(s)	21, 373
Lsp1109I	GCAGC	7 cut(s)	16, 19, 206, 214, 308, 311, 394
LweI	GCATC	5 cut(s)	196, 327, 333, 370, 460
MalI	GATC	2 cut(s)	23, 375
MboI	GATC	2 cut(s)	21, 373
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	3 cut(s)	69, 198, 493
MluNI	TGGCCA	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	554
MnlI	CCTC	9 cut(s)	54, 243, 300, 419, 454, 497, 550, 586, 601
Mox20I	TGGCCA	1 cut(s)	567
Mph1103I	ATGCAT	2 cut(s)	363, 453
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	2 cut(s)	227, 500
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	3 cut(s)	161, 423, 569
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	3 cut(s)	161, 423, 569
MwoI	GCNNNNNNNGC	7 cut(s)	13, 149, 200, 227, 305, 367, 448
NdeII	GATC	2 cut(s)	21, 373
NlaIII	CATG	8 cut(s)	34, 283, 361, 400, 442, 451, 473, 593
NlaIV	GGNNCC	3 cut(s)	222, 246, 574
NsbI	TGCGCA	1 cut(s)	210
NsiI	ATGCAT	2 cut(s)	363, 453
NspI	RCATGY	3 cut(s)	283, 361, 442
PaeI	GCATGC	1 cut(s)	442
PaqCI	CACCTGC	1 cut(s)	545
PfeI	GAWTC	2 cut(s)	103, 178
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	8 cut(s)	6, 9, 196, 229, 298, 301, 384, 488
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PpuMI	RGGWCCY	1 cut(s)	573
Psp5II	RGGWCCY	1 cut(s)	573
Psp6I	CCWGG	3 cut(s)	159, 421, 567
PspGI	CCWGG	3 cut(s)	159, 421, 567
PspN4I	GGNNCC	3 cut(s)	222, 246, 574
PspPI	GGNCC	5 cut(s)	244, 428, 488, 506, 573
PspPPI	RGGWCCY	1 cut(s)	573
PstNI	CAGNNNCTG	2 cut(s)	166, 548
PvuII	CAGCTG	2 cut(s)	227, 500
RsaI	GTAC	2 cut(s)	80, 158
RsaNI	GTAC	2 cut(s)	79, 157
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	8 cut(s)	5, 8, 195, 228, 297, 300, 383, 487
Sau3AI	GATC	2 cut(s)	21, 373
Sau96I	GGNCC	5 cut(s)	244, 428, 488, 506, 573
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	3 cut(s)	161, 423, 569
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	6 cut(s)	84, 229, 424, 502, 559, 578
SfaNI	GCATC	5 cut(s)	196, 327, 333, 370, 460
SinI	GGWCC	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	474
SphI	GCATGC	1 cut(s)	442
Sse9I	AATT	3 cut(s)	69, 198, 493
SsiI	CCGC	3 cut(s)	14, 269, 486
SspI	AATATT	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	159, 421, 567
TaaI	ACNGT	1 cut(s)	599
TasI	AATT	3 cut(s)	69, 198, 493
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	103, 178
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseI	GCWGC	7 cut(s)	4, 7, 194, 227, 296, 299, 382
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	573
XapI	RAATTY	2 cut(s)	69, 493
XceI	RCATGY	3 cut(s)	283, 361, 442
Zsp2I	ATGCAT	2 cut(s)	363, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.