Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Forward (+)

486800 .. 489651

Gene Structure 2852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGTTTTGCCATCTTCAACACCGTTACAAACCACCGGAAAGAAGACGATATCCTCGCCGGAATATAACTTCCCGGTGATCGATTTCTCCTTAAACGATCGGTCAAAACTATCGGAGAAGATCGTAAAAGCCTGTGAGGTTAATGGGTTTTTCAAGGTGATAAACCATGGAGTTAAACCGGAGATAATAAAGAGATTCGAGCATGAAGGAGAAGAGTTCTTTAATAAACCGGAATCAGATAAGCTACGAGCCGGTCCGGCGAGTCCGTTCGGTTACGGATGCAAGAACATCGGGTTCAACGGCGATTTGGGTGAGCTTGAGTATCTTCTTCTCCACGCAAATCCGACAGCTGTCGCTGATAAATCTGAAACTATATCTCATGATGATCCTTTCAAGTTCAGCTCGGCGACGAATGATTACATACGCACGGTTAGAGATTTGGCATGTGAGATCATTGATCTGACGATCGAGAATTTATGGGGACAGAAGTCTAGCGAAGTGAGTGAGCTGATCAGAGACGTTCGTAGCGATTCGATCCTACGGTTGAATCACTATCCACCAGCACCGTACGCGTTAAGTGGCGTTGGTCAAATAGGTTTCGGAGAACATTCTGACCCTCAGATCTTGACGGTGTTAAGATCCAACGACGTAGATGGACTTGAGATTTGCTCACGTGACGGCTTGTGGATCCCAATCCCATCTGACCCTACATGCTTCTTCGTATTGGTCGGTGACTGCCTTCAGGCATTGACGAATGGGAGATTCACTAGCGTGAGGCATAGGGTTTTAGCAAACACAGCAAAGAAGCCACGTATGTCGGCGATGTACTTTGCAGCTCCACCGTTAGAGGCGAAAATATCACCGTTGCCAAAAATGGTGTCGCCGGAAAATCCAAGACGTTATAATTCATTCACATGGGGTGACTACAAAAAAGCTACATACTCTCTCCGTTTAGATGTCCCTCGTCTCGAGTTTTTCAAGACTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

329

Amino Acids

36.84

Weight (kDa)

6.41

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	25 - 89	4.7e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	177 - 252	4.6e-14	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AccII	CGCG	1 cut(s)	572
AclWI	GGATC	5 cut(s)	380, 529, 633, 682, 695
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	725
AcvI	CACGTG	1 cut(s)	674
AfaI	GTAC	2 cut(s)	569, 827
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	6 cut(s)	18, 154, 298, 394, 547, 979
AleI	CACNNNNGTG	1 cut(s)	770
AluBI	AGCT	7 cut(s)	244, 316, 350, 402, 508, 836, 935
AluI	AGCT	7 cut(s)	244, 316, 350, 402, 508, 836, 935
Alw26I	GTCTC	2 cut(s)	510, 971
AlwI	GGATC	5 cut(s)	380, 529, 633, 682, 695
Ama87I	CYCGRG	1 cut(s)	968
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	1 cut(s)	472
ArsI	GACNNNNNNTTYG	4 cut(s)	648, 680, 863, 895
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	6 cut(s)	88, 169, 323, 743, 852, 932
AvaI	CYCGRG	1 cut(s)	968
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	687
BbrPI	CACGTG	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	845
BccI	CCATC	3 cut(s)	19, 647, 706
BceAI	ACGGC	2 cut(s)	316, 694
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	510, 971
BfaI	CTAG	2 cut(s)	492, 768
BglI	GCCNNNNNGGC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	621
BisI	GCNGC	1 cut(s)	834
BlsI	GCNGC	1 cut(s)	835
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	968
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	689
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	269
BoxI	GACNNNNGTC	2 cut(s)	350, 487
BpiI	GAAGAC	1 cut(s)	50
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
BpuEI	CTTGAG	2 cut(s)	338, 680
BpuMI	CCSGG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	81
BsaAI	YACGTR	2 cut(s)	674, 812
BsaBI	GATNNNNATC	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	3 cut(s)	35, 178, 229
Bse118I	RCCGGY	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	692
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	284
BseJI	GATNNNNATC	1 cut(s)	692
BseMII	CTCAG	1 cut(s)	632
BseXI	GCAGC	1 cut(s)	845
Bsh1236I	CGCG	1 cut(s)	572
Bsh1285I	CGRYCG	2 cut(s)	100, 468
BshVI	ATCGAT	1 cut(s)	81
BsiEI	CGRYCG	2 cut(s)	100, 468
BsiHKCI	CYCGRG	1 cut(s)	968
BsiSI	CCGG	8 cut(s)	36, 59, 74, 179, 230, 252, 257, 884
BsiWI	CGTACG	1 cut(s)	567
BslFI	GGGAC	2 cut(s)	495, 944
BsmAI	GTCTC	2 cut(s)	510, 971
BsmBI	CGTCTC	2 cut(s)	510, 971
BsmFI	GGGAC	2 cut(s)	495, 944
BsoBI	CYCGRG	1 cut(s)	968
Bsp19I	CCATGG	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	631
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	572
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	689
BspPI	GGATC	5 cut(s)	380, 529, 633, 682, 695
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	7 cut(s)	24, 430, 543, 567, 631, 843, 864
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	2 cut(s)	674, 812
BstDEI	CTNAG	1 cut(s)	618
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	572
BstMAI	GTCTC	2 cut(s)	510, 971
BstMCI	CGRYCG	2 cut(s)	100, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 569, 797
BstNSI	RCATGY	2 cut(s)	447, 714
BstPAI	GACNNNNGTC	2 cut(s)	350, 487
BstSCI	CCNGG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	1 cut(s)	845
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	3 cut(s)	621, 638, 687
BstYI	RGATCY	3 cut(s)	621, 638, 687
Bsu15I	ATCGAT	1 cut(s)	81
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	166
BtgZI	GCGATG	1 cut(s)	836
BtsCI	GGATG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	81
CpoI	CGGWCCG	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	568, 826
CspI	CGGWCCG	1 cut(s)	254
CviAII	CATG	6 cut(s)	167, 203, 380, 444, 711, 915
CviQI	GTAC	2 cut(s)	568, 826
DdeI	CTNAG	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	166
Eco32I	GATATC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	725
Eco72I	CACGTG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	968
EcoRV	GATATC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
Esp3I	CGTCTC	2 cut(s)	510, 971
FaeI	CATG	6 cut(s)	170, 206, 383, 447, 714, 918
FaqI	GGGAC	2 cut(s)	495, 944
FatI	CATG	6 cut(s)	166, 202, 379, 443, 710, 914
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	1 cut(s)	834
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	834
FspBI	CTAG	2 cut(s)	492, 768
GluI	GCNGC	1 cut(s)	834
HapII	CCGG	8 cut(s)	36, 59, 74, 179, 230, 252, 257, 884
Hin1II	CATG	6 cut(s)	170, 206, 383, 447, 714, 918
HinfI	GANTC	6 cut(s)	195, 233, 262, 530, 547, 762
HpaII	CCGG	8 cut(s)	36, 59, 74, 179, 230, 252, 257, 884
HphI	GGTGA	6 cut(s)	88, 169, 323, 743, 852, 932
Hpy188III	TCNNGA	5 cut(s)	380, 469, 625, 968, 979
Hpy99I	CGWCG	2 cut(s)	412, 650
HpyAV	CCTTC	2 cut(s)	200, 749
HpyCH4III	ACNGT	7 cut(s)	24, 430, 543, 567, 631, 843, 864
HpyCH4IV	ACGT	5 cut(s)	519, 648, 673, 811, 898
HpyCH4V	TGCA	2 cut(s)	282, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 569, 797
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	5 cut(s)	519, 648, 673, 811, 898
Hsp92II	CATG	6 cut(s)	170, 206, 383, 447, 714, 918
Ksp22I	TGATCA	1 cut(s)	510
LmnI	GCTCC	1 cut(s)	841
Lsp1109I	GCAGC	1 cut(s)	845
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	2 cut(s)	492, 768
MaeII	ACGT	5 cut(s)	519, 648, 673, 811, 898
MaeIII	GTNAC	5 cut(s)	24, 272, 674, 731, 920
MboII	GAAGA	7 cut(s)	6, 55, 130, 224, 317, 320, 709
MflI	RGATCY	3 cut(s)	621, 638, 687
MluCI	AATT	2 cut(s)	472, 904
MluI	ACGCGT	1 cut(s)	570
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	368, 666
MnlI	CCTC	6 cut(s)	64, 130, 627, 768, 841, 972
MseI	TTAA	6 cut(s)	92, 141, 174, 222, 575, 635
MslI	CAYNNNNRTG	2 cut(s)	770, 913
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	8 cut(s)	36, 59, 74, 179, 230, 252, 257, 884
MspR9I	CCNGG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	3 cut(s)	257, 569, 797
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	166
NlaIII	CATG	6 cut(s)	170, 206, 383, 447, 714, 918
NlaIV	GGNNCC	1 cut(s)	689
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	3 cut(s)	674, 731, 920
NspI	RCATGY	2 cut(s)	447, 714
OliI	CACNNNNGTG	1 cut(s)	770
PaeR7I	CTCGAG	1 cut(s)	968
PagI	TCATGA	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PfeI	GAWTC	5 cut(s)	195, 233, 530, 547, 762
Pfl23II	CGTACG	1 cut(s)	567
PkrI	GCNGC	1 cut(s)	835
Ple19I	CGATCG	2 cut(s)	100, 468
PleI	GAGTC	1 cut(s)	270
PmaCI	CACGTG	1 cut(s)	674
PmlI	CACGTG	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	270
Ppu21I	YACGTR	2 cut(s)	674, 812
PshAI	GACNNNNGTC	2 cut(s)	350, 487
PsiI	TTATAA	1 cut(s)	903
PspCI	CACGTG	1 cut(s)	674
PspLI	CGTACG	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	689
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	3 cut(s)	621, 638, 687
PvuI	CGATCG	2 cut(s)	100, 468
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	2 cut(s)	569, 827
RsaNI	GTAC	2 cut(s)	568, 826
RseI	CAYNNNNRTG	2 cut(s)	770, 913
Rsr2I	CGGWCCG	1 cut(s)	254
RsrII	CGGWCCG	1 cut(s)	254
SaqAI	TTAA	6 cut(s)	92, 141, 174, 222, 575, 635
SatI	GCNGC	1 cut(s)	834
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	74
SfaNI	GCATC	1 cut(s)	269
Sfr274I	CTCGAG	1 cut(s)	968
SinI	GGWCC	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	968
SmiMI	CAYNNNNRTG	2 cut(s)	770, 913
SmlI	CTYRAG	3 cut(s)	317, 659, 968
SmoI	CTYRAG	3 cut(s)	317, 659, 968
Sse9I	AATT	2 cut(s)	472, 904
SspMI	CTAG	2 cut(s)	492, 768
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	7 cut(s)	24, 430, 543, 567, 631, 843, 864
TaiI	ACGT	5 cut(s)	522, 651, 676, 814, 901
TaqI	TCGA	5 cut(s)	81, 198, 468, 533, 969
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	472, 904
TatI	WGTACW	1 cut(s)	825
TfiI	GAWTC	5 cut(s)	195, 233, 530, 547, 762
Tru1I	TTAA	6 cut(s)	92, 141, 174, 222, 575, 635
Tru9I	TTAA	6 cut(s)	92, 141, 174, 222, 575, 635
TseFI	GTSAC	3 cut(s)	674, 731, 920
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	3 cut(s)	674, 731, 920
TspDTI	ATGAA	2 cut(s)	219, 897
TspGWI	ACGGA	3 cut(s)	255, 291, 938
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	2 cut(s)	447, 714
XhoI	CTCGAG	1 cut(s)	968
XspI	CTAG	2 cut(s)	492, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.