Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Reverse (-)

403444 .. 407130

Gene Structure 3687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G006700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGTTGTACCATCTCCTTCACCAATACGAACCAAGAAAACCAAGGCAGTAGGAATTCCTACAATCGATCTATCAAATTACAATAGGTCAAAGCTGTCGGAACAAATTGTCGAGGCCTGTGAAGAGTATGGTTTCTTCAAGGTGGTGAACCACGGCATCCCGAAAGAGGTCATTGAGAGAATGGAAGCACAAGGTGCTGATTTTTTCGCCAAACCCGCCATGGAGAAGCAACGAGCAGGCCCGGCTTGTCCTTTTGGTTATGGCTGCAAAAACATTGGCCGCAATGGTGACATGGGAGAGCTTGAATACCTTCTCCTTCAAACCGATCCTCTCTCTGTTTCTGAGAGATCCAATGCCATCTCCAACGAGCCTACAAAATTCAACTGTGCAGTAAATGATTACACAGAAGCAGTTAAGGAATTGGCATGTGAGATTCTTGATCTGGTGGGTGAGGGGCTATGGGTTTCAGACAAGTCTGTGTTCAGTAGGTTCATCAGAGACGTCCAGAGTGACTCAATTCTGAGGCTTAATCACTATCCTGCGGTCAAGGACCCATCACCAAAACAACAGCTTCATCCGTATGGTAACAATAATAGGATTGGCTTTGGAGAGCATTCTGACCCTCAGATCTTGACCATCCTAAGATCCAACAACGTGGGGGGCCTTCAGATTTCACTGCATGATGGCTTGTGGGTTCCCGTCCCTCCTGACCCCAATCACTTCTTTGTAATGGTTGGTGATGCCTTACAGGCTTTGACGAATGGGAGGTTAGTAAGTGTGAGACATAGGGCATTGGCAAACTCAGTCATGAAGCCAAGGATGTCGATGGTGTACTTTGGGGCACCACCCCTAAATGCATGGATGTCTCCACTTCCGGAAATGGTGTCCCCGGAGAAGCCCAGCCTCTACAAGCCCTTCACATGGGGCGATTACAAGAAAGCAGCATACACTACACGATTGGGAGATTCACGTCTCGACCTTTTCAAGATTAATAATAATAATCACACCTGCAACGATCAAATTCCATGTCCATGCTTGGACAATCTTGTACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

352

Amino Acids

39.12

Weight (kDa)

6.71

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1016
AatII	GACGTC	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	1016
AccB1I	GGYRCC	1 cut(s)	841
AccIII	TCCGGA	1 cut(s)	874
AciI	CCGC	3 cut(s)	216, 280, 542
AclWI	GGATC	3 cut(s)	320, 342, 639
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	3 cut(s)	54, 377, 1020
AcuI	CTGAAG	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	501
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	3 cut(s)	9, 833, 1050
AfiI	CCNNNNNNNGG	2 cut(s)	166, 921
AgsI	TTSAA	5 cut(s)	139, 305, 320, 382, 985
AjiI	CACGTC	1 cut(s)	971
AluBI	AGCT	3 cut(s)	94, 301, 571
AluI	AGCT	3 cut(s)	94, 301, 571
Alw26I	GTCTC	4 cut(s)	492, 775, 870, 977
AlwI	GGATC	3 cut(s)	320, 342, 639
Aor13HI	TCCGGA	1 cut(s)	874
AoxI	GGCC	4 cut(s)	114, 238, 277, 661
ApeKI	GCWGC	2 cut(s)	264, 941
ApoI	RAATTY	3 cut(s)	54, 377, 1020
ArsI	GACNNNNNNTTYG	2 cut(s)	1012, 1044
AseI	ATTAAT	1 cut(s)	990
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	239, 550, 661
AsuC2I	CCSGG	2 cut(s)	242, 890
AsuHPI	GGTGA	6 cut(s)	12, 157, 299, 461, 549, 749
AvaII	GGWCC	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	844
BanI	GGYRCC	1 cut(s)	841
BarI	GAAGNNNNNNTAC	2 cut(s)	119, 151
BbvI	GCAGC	2 cut(s)	251, 953
BccI	CCATC	6 cut(s)	19, 365, 562, 644, 677, 820
BceAI	ACGGC	1 cut(s)	169
BcnI	CCSGG	2 cut(s)	242, 890
BcoDI	GTCTC	4 cut(s)	492, 775, 870, 977
BfuAI	ACCTGC	1 cut(s)	1016
BglI	GCCNNNNNGGC	1 cut(s)	749
BglII	AGATCT	1 cut(s)	627
BisI	GCNGC	3 cut(s)	265, 280, 942
BlsI	GCNGC	3 cut(s)	266, 281, 943
Bme1390I	CCNGG	2 cut(s)	242, 890
Bme18I	GGWCC	1 cut(s)	550
BmgBI	CACGTC	1 cut(s)	971
BmgT120I	GGNCC	3 cut(s)	239, 550, 661
BmiI	GGNNCC	4 cut(s)	552, 662, 696, 843
BmrFI	CCNGG	2 cut(s)	242, 890
BmsI	GCATC	2 cut(s)	165, 730
BpuMI	CCSGG	2 cut(s)	242, 890
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	5 cut(s)	42, 151, 219, 815, 888
BsaWI	WCCGGW	1 cut(s)	874
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 921
Bse3DI	GCAATG	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	874
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	5 cut(s)	42, 151, 219, 815, 888
BseGI	GGATG	5 cut(s)	156, 574, 636, 825, 867
BseLI	CCNNNNNNNGG	2 cut(s)	166, 921
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	4 cut(s)	333, 512, 638, 816
BseSI	GKGCMC	1 cut(s)	844
BseXI	GCAGC	2 cut(s)	251, 953
BseYI	CCCAGC	1 cut(s)	899
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	4 cut(s)	116, 240, 279, 663
BshNI	GGYRCC	1 cut(s)	841
BshVI	ATCGAT	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	242, 875, 890
BslFI	GGGAC	2 cut(s)	686, 871
BslI	CCNNNNNNNGG	2 cut(s)	166, 921
BsmAI	GTCTC	4 cut(s)	492, 775, 870, 977
BsmBI	CGTCTC	2 cut(s)	492, 977
BsmFI	GGGAC	2 cut(s)	686, 871
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	4 cut(s)	116, 240, 279, 663
Bsp1286I	GDGCHC	1 cut(s)	844
Bsp13I	TCCGGA	1 cut(s)	874
Bsp1407I	TGTACA	1 cut(s)	1048
Bsp143I	GATC	7 cut(s)	67, 325, 347, 439, 627, 644, 1015
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	3 cut(s)	216, 280, 542
BspANI	GGCC	4 cut(s)	116, 240, 279, 663
BspCNI	CTCAG	4 cut(s)	334, 513, 637, 815
BspDI	ATCGAT	1 cut(s)	66
BspEI	TCCGGA	1 cut(s)	874
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	4 cut(s)	552, 662, 696, 843
BspMI	ACCTGC	1 cut(s)	1016
BspPI	GGATC	3 cut(s)	320, 342, 639
BspT107I	GGYRCC	1 cut(s)	841
BsrDI	GCAATG	1 cut(s)	289
BsrGI	TGTACA	1 cut(s)	1048
BssECI	CCNNGG	5 cut(s)	42, 151, 219, 815, 888
BssMI	GATC	7 cut(s)	67, 325, 347, 439, 627, 644, 1015
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	3 cut(s)	42, 219, 815
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	1048
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	5 cut(s)	342, 521, 624, 641, 802
BstDSI	CCRYGG	2 cut(s)	151, 219
BstF5I	GGATG	5 cut(s)	156, 574, 636, 825, 867
BstKTI	GATC	7 cut(s)	70, 328, 350, 442, 630, 647, 1018
BstMAI	GTCTC	4 cut(s)	492, 775, 870, 977
BstMBI	GATC	7 cut(s)	67, 325, 347, 439, 627, 644, 1015
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 215, 242, 749
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	240, 888
BstSLI	GKGCMC	1 cut(s)	844
BstV1I	GCAGC	2 cut(s)	251, 953
BstX2I	RGATCY	3 cut(s)	347, 627, 644
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstYI	RGATCY	3 cut(s)	347, 627, 644
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	116, 240, 279, 663
BsuTUI	ATCGAT	1 cut(s)	66
BtgI	CCRYGG	2 cut(s)	151, 219
BtrI	CACGTC	1 cut(s)	971
BtsCI	GGATG	5 cut(s)	156, 574, 636, 825, 867
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	1 cut(s)	674
BveI	ACCTGC	1 cut(s)	1016
Cac8I	GCNNGC	1 cut(s)	238
CciI	TCATGA	1 cut(s)	807
Cfr13I	GGNCC	3 cut(s)	239, 550, 661
ClaI	ATCGAT	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	8, 832, 1049
CviAII	CATG	9 cut(s)	220, 292, 426, 680, 808, 858, 921, 1026, 1032
CviQI	GTAC	3 cut(s)	8, 832, 1049
DdeI	CTNAG	5 cut(s)	342, 521, 624, 641, 802
DpnI	GATC	7 cut(s)	69, 327, 349, 441, 629, 646, 1017
DpnII	GATC	7 cut(s)	67, 325, 347, 439, 627, 644, 1015
DraIII	CACNNNGTG	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco130I	CCWWGG	3 cut(s)	42, 219, 815
Eco147I	AGGCCT	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	650
EcoO109I	RGGNCCY	2 cut(s)	550, 661
EcoRI	GAATTC	1 cut(s)	54
EcoT14I	CCWWGG	3 cut(s)	42, 219, 815
EcoT22I	ATGCAT	1 cut(s)	859
ErhI	CCWWGG	3 cut(s)	42, 219, 815
Esp3I	CGTCTC	2 cut(s)	492, 977
FaeI	CATG	9 cut(s)	223, 295, 429, 683, 811, 861, 924, 1029, 1035
FaqI	GGGAC	2 cut(s)	686, 871
FatI	CATG	9 cut(s)	219, 291, 425, 679, 807, 857, 920, 1025, 1031
FauI	CCCGC	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	265, 280, 942
FokI	GGATG	5 cut(s)	143, 561, 623, 832, 874
Fsp4HI	GCNGC	3 cut(s)	265, 280, 942
GluI	GCNGC	3 cut(s)	265, 280, 942
GsaI	CCCAGC	1 cut(s)	903
HaeIII	GGCC	4 cut(s)	116, 240, 279, 663
HapII	CCGG	3 cut(s)	242, 875, 890
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	9 cut(s)	223, 295, 429, 683, 811, 861, 924, 1029, 1035
HinfI	GANTC	3 cut(s)	433, 512, 965
HpaII	CCGG	3 cut(s)	242, 875, 890
HphI	GGTGA	6 cut(s)	12, 157, 299, 461, 549, 749
Hpy166II	GTNNAC	2 cut(s)	148, 832
Hpy188I	TCNGA	8 cut(s)	100, 343, 469, 497, 522, 619, 627, 669
Hpy188III	TCNNGA	9 cut(s)	160, 437, 505, 631, 707, 808, 875, 974, 985
Hpy8I	GTNNAC	2 cut(s)	148, 832
HpyAV	CCTTC	5 cut(s)	27, 320, 326, 674, 925
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	3 cut(s)	501, 654, 970
HpyCH4V	TGCA	5 cut(s)	267, 389, 679, 857, 1011
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 215, 242, 749
HpyF3I	CTNAG	5 cut(s)	342, 521, 624, 641, 802
HpySE526I	ACGT	3 cut(s)	501, 654, 970
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	9 cut(s)	223, 295, 429, 683, 811, 861, 924, 1029, 1035
Kpn2I	TCCGGA	1 cut(s)	874
Kzo9I	GATC	7 cut(s)	67, 325, 347, 439, 627, 644, 1015
Lsp1109I	GCAGC	2 cut(s)	251, 953
LweI	GCATC	2 cut(s)	165, 730
MaeII	ACGT	3 cut(s)	501, 654, 970
MaeIII	GTNAC	3 cut(s)	287, 509, 584
MalI	GATC	7 cut(s)	69, 327, 349, 441, 629, 646, 1017
MboI	GATC	7 cut(s)	67, 325, 347, 439, 627, 644, 1015
MboII	GAAGA	2 cut(s)	127, 134
MflI	RGATCY	3 cut(s)	347, 627, 644
MhlI	GDGCHC	1 cut(s)	844
MluCI	AATT	7 cut(s)	54, 76, 105, 377, 419, 516, 1020
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	3 cut(s)	78, 387, 672
MnlI	CCTC	9 cut(s)	106, 160, 339, 445, 516, 633, 714, 759, 914
Mph1103I	ATGCAT	1 cut(s)	859
MroI	TCCGGA	1 cut(s)	874
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	3 cut(s)	414, 528, 990
MslI	CAYNNNNRTG	2 cut(s)	579, 1030
MspI	CCGG	3 cut(s)	242, 875, 890
MspR9I	CCNGG	2 cut(s)	242, 890
Mva1269I	GAATGC	1 cut(s)	613
MwoI	GCNNNNNNNGC	4 cut(s)	194, 215, 242, 749
NciI	CCSGG	2 cut(s)	242, 890
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	7 cut(s)	67, 325, 347, 439, 627, 644, 1015
NlaIII	CATG	9 cut(s)	223, 295, 429, 683, 811, 861, 924, 1029, 1035
NlaIV	GGNNCC	4 cut(s)	552, 662, 696, 843
NmuCI	GTSAC	2 cut(s)	287, 509
NsiI	ATGCAT	1 cut(s)	859
NspI	RCATGY	1 cut(s)	429
PagI	TCATGA	1 cut(s)	807
PaqCI	CACCTGC	1 cut(s)	1016
PceI	AGGCCT	1 cut(s)	116
PctI	GAATGC	1 cut(s)	613
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	433, 965
PkrI	GCNGC	3 cut(s)	266, 281, 943
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	1 cut(s)	550
PshBI	ATTAAT	1 cut(s)	990
Psp5II	RGGWCCY	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	899
PspN4I	GGNNCC	4 cut(s)	552, 662, 696, 843
PspPI	GGNCC	3 cut(s)	239, 550, 661
PspPPI	RGGWCCY	1 cut(s)	550
PsuI	RGATCY	3 cut(s)	347, 627, 644
RsaI	GTAC	3 cut(s)	9, 833, 1050
RsaNI	GTAC	3 cut(s)	8, 832, 1049
RseI	CAYNNNNRTG	2 cut(s)	579, 1030
SaqAI	TTAA	3 cut(s)	414, 528, 990
SatI	GCNGC	3 cut(s)	265, 280, 942
Sau3AI	GATC	7 cut(s)	67, 325, 347, 439, 627, 644, 1015
Sau96I	GGNCC	3 cut(s)	239, 550, 661
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	242, 890
SduI	GDGCHC	1 cut(s)	844
SfaNI	GCATC	2 cut(s)	165, 730
SinI	GGWCC	1 cut(s)	550
SmiMI	CAYNNNNRTG	2 cut(s)	579, 1030
Sse9I	AATT	7 cut(s)	54, 76, 105, 377, 419, 516, 1020
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	3 cut(s)	216, 280, 542
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	240, 888
StyI	CCWWGG	3 cut(s)	42, 219, 815
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	3 cut(s)	504, 657, 973
TaqI	TCGA	4 cut(s)	66, 111, 824, 975
TasI	AATT	7 cut(s)	54, 76, 105, 377, 419, 516, 1020
TatI	WGTACW	2 cut(s)	831, 1048
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	433, 965
Tru1I	TTAA	3 cut(s)	414, 528, 990
Tru9I	TTAA	3 cut(s)	414, 528, 990
TscAI	CASTG	1 cut(s)	681
TseFI	GTSAC	2 cut(s)	287, 509
TseI	GCWGC	2 cut(s)	264, 941
Tsp45I	GTSAC	2 cut(s)	287, 509
TspDTI	ATGAA	3 cut(s)	481, 563, 824
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	681
VpaK11BI	GGWCC	1 cut(s)	550
VspI	ATTAAT	1 cut(s)	990
XapI	RAATTY	3 cut(s)	54, 377, 1020
XceI	RCATGY	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	309
ZraI	GACGTC	1 cut(s)	502
Zsp2I	ATGCAT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.