Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Forward (+)

36564698 .. 36566828

Gene Structure 2131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1286800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGAGATTCAAAGAAAAGTTCTGTGCAGTGAATGATTACATAGAAGCAGTTAAAGAATTGGCATGTGAGATTCTTGATCTGGTGGCCGAGGGACTATGGGTTTCAGACAAGTCTGTGTTCAGCAGGTTCATCAGAGACGTCCAGAGCGACTCAATTCTTAGGCTTAATCACTATCCTCCGGTCAAGGACTGGGACACAGCAACTAAACAGCATCCTTTCACTAATAACAACAATAATGATAATAGGATTGGATTTGGAGAGCATTCTGACCCTCAAATCTTGACAATCTTTAGATCCAACAACGTGGGGGGCCTTCAGATTTTTCTACGTGATGGCTTGTGGGTTCCCGTCGCTCCCGACGCCAATCAATTCTTTGTAATGGTTGGTGATGCCTTACAGGCTTTAACGAATGGGAGGTTAGTGAGCGTGAGACATAGGGCACTGGCAAACTCAGTGGTGAAGCCAAGGATGTCAATGGTGTACTTTGGGGCACCACCACTCAATGCATGGATGTCTCCTCTGCCGGAGATGGTGTCGCCGGAGAAGCCCAGCCTCTACAAGCCCTTCACATGGGGTGAGTACAAGAAAGCTGCATACACTACACGATTGGGAGATTCACGTCTAGACCTTTTCAAGATTAATAACCACAGGTGCAAGTGTAAAGATCAAATTCCATGTCCATGCTTCGACAATCTTGTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

236

Amino Acids

26.83

Weight (kDa)

8.18

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	51 - 164	1.7e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	493
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	141, 363
AfaI	GTAC	3 cut(s)	485, 584, 702
AfiI	CCNNNNNNNGG	1 cut(s)	573
AgsI	TTSAA	2 cut(s)	13, 637
AjiI	CACGTC	1 cut(s)	623
AluBI	AGCT	1 cut(s)	593
AluI	AGCT	1 cut(s)	593
Alw26I	GTCTC	3 cut(s)	132, 427, 522
AlwI	GGATC	1 cut(s)	291
AoxI	GGCC	2 cut(s)	87, 313
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	1 cut(s)	672
ArsI	GACNNNNNNTTYG	2 cut(s)	664, 696
AseI	ATTAAT	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	3 cut(s)	401, 472, 590
BaeGI	GKGCMC	2 cut(s)	445, 496
BanI	GGYRCC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	329, 526
BcoDI	GTCTC	3 cut(s)	132, 427, 522
BfaI	CTAG	1 cut(s)	626
BfuAI	ACCTGC	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
BmgBI	CACGTC	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	3 cut(s)	314, 348, 495
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	223, 382
BmuI	ACTGGG	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	332
BsaHI	GRCGYC	2 cut(s)	141, 363
BsaJI	CCNNGG	2 cut(s)	90, 467
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse1I	ACTGG	2 cut(s)	197, 450
BseDI	CCNNGG	2 cut(s)	90, 467
BseGI	GGATG	3 cut(s)	214, 477, 519
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	197, 450
BseRI	GAGGAG	1 cut(s)	510
BseSI	GKGCMC	2 cut(s)	445, 496
BseXI	GCAGC	1 cut(s)	580
BseYI	CCCAGC	1 cut(s)	551
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	89, 315
BshNI	GGYRCC	1 cut(s)	493
BsiSI	CCGG	3 cut(s)	182, 527, 542
BslFI	GGGAC	2 cut(s)	108, 209
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	3 cut(s)	132, 427, 522
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	108, 209
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	89, 315
Bsp1286I	GDGCHC	2 cut(s)	445, 496
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	79, 296, 667
BspANI	GGCC	2 cut(s)	89, 315
BspCNI	CTCAG	1 cut(s)	467
BspLI	GGNNCC	3 cut(s)	314, 348, 495
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	493
BsrGI	TGTACA	1 cut(s)	700
BsrI	ACTGG	2 cut(s)	197, 450
BssECI	CCNNGG	2 cut(s)	90, 467
BssMI	GATC	3 cut(s)	79, 296, 667
BssNI	GRCGYC	2 cut(s)	141, 363
BssT1I	CCWWGG	1 cut(s)	467
BstACI	GRCGYC	2 cut(s)	141, 363
BstAUI	TGTACA	1 cut(s)	700
BstBAI	YACGTR	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	161, 454
BstF5I	GGATG	3 cut(s)	214, 477, 519
BstKTI	GATC	3 cut(s)	82, 299, 670
BstMAI	GTCTC	3 cut(s)	132, 427, 522
BstMBI	GATC	3 cut(s)	79, 296, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 401, 547
BstNSI	RCATGY	1 cut(s)	69
BstSLI	GKGCMC	2 cut(s)	445, 496
BstV1I	GCAGC	1 cut(s)	580
BstX2I	RGATCY	1 cut(s)	296
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	89, 315
BtrI	CACGTC	1 cut(s)	623
BtsCI	GGATG	3 cut(s)	214, 477, 519
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	3 cut(s)	36, 443, 462
BveI	ACCTGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	3 cut(s)	484, 583, 701
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviAII	CATG	5 cut(s)	66, 510, 573, 678, 684
CviQI	GTAC	3 cut(s)	484, 583, 701
DdeI	CTNAG	2 cut(s)	161, 454
DpnI	GATC	3 cut(s)	81, 298, 669
DpnII	GATC	3 cut(s)	79, 296, 667
EaeI	YGGCCR	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	467
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	5 cut(s)	69, 513, 576, 681, 687
FaiI	YATR	9 cut(s)	44, 67, 100, 438, 511, 574, 598, 679, 685
FaqI	GGGAC	2 cut(s)	108, 209
FatI	CATG	5 cut(s)	65, 509, 572, 677, 683
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	3 cut(s)	201, 484, 526
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	1 cut(s)	594
GsaI	CCCAGC	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	89, 315
HapII	CCGG	3 cut(s)	182, 527, 542
HgaI	GACGC	1 cut(s)	371
Hin1I	GRCGYC	2 cut(s)	141, 363
Hin1II	CATG	5 cut(s)	69, 513, 576, 681, 687
HinfI	GANTC	4 cut(s)	9, 73, 152, 617
HpaII	CCGG	3 cut(s)	182, 527, 542
HphI	GGTGA	3 cut(s)	401, 472, 590
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	4 cut(s)	109, 137, 271, 321
Hpy188III	TCNNGA	6 cut(s)	77, 145, 283, 359, 626, 637
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	2 cut(s)	356, 365
HpyAV	CCTTC	2 cut(s)	326, 577
HpyCH4IV	ACGT	4 cut(s)	141, 306, 331, 622
HpyCH4V	TGCA	4 cut(s)	29, 509, 596, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 401, 547
HpyF3I	CTNAG	2 cut(s)	161, 454
HpySE526I	ACGT	4 cut(s)	141, 306, 331, 622
Hsp92I	GRCGYC	2 cut(s)	141, 363
Hsp92II	CATG	5 cut(s)	69, 513, 576, 681, 687
Kzo9I	GATC	3 cut(s)	79, 296, 667
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	2 cut(s)	223, 382
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	4 cut(s)	141, 306, 331, 622
MalI	GATC	3 cut(s)	81, 298, 669
MboI	GATC	3 cut(s)	79, 296, 667
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	445, 496
MluCI	AATT	4 cut(s)	59, 156, 371, 672
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	6 cut(s)	85, 189, 285, 411, 531, 566
Mph1103I	ATGCAT	1 cut(s)	511
MseI	TTAA	4 cut(s)	54, 168, 407, 642
MslI	CAYNNNNRTG	1 cut(s)	682
MspI	CCGG	3 cut(s)	182, 527, 542
Mva1269I	GAATGC	1 cut(s)	265
MwoI	GCNNNNNNNGC	3 cut(s)	362, 401, 547
NdeII	GATC	3 cut(s)	79, 296, 667
NlaIII	CATG	5 cut(s)	69, 513, 576, 681, 687
NlaIV	GGNNCC	3 cut(s)	314, 348, 495
NmeAIII	GCCGAG	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	9, 73, 617
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	332
PshBI	ATTAAT	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	551
PspN4I	GGNNCC	3 cut(s)	314, 348, 495
PspPI	GGNCC	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	3 cut(s)	485, 584, 702
RsaNI	GTAC	3 cut(s)	484, 583, 701
RseI	CAYNNNNRTG	1 cut(s)	682
SaqAI	TTAA	4 cut(s)	54, 168, 407, 642
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	3 cut(s)	79, 296, 667
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	445, 496
SetI	ASST	9 cut(s)	131, 144, 309, 334, 422, 595, 625, 633, 656
SfaNI	GCATC	2 cut(s)	223, 382
SmiMI	CAYNNNNRTG	1 cut(s)	682
Sse9I	AATT	4 cut(s)	59, 156, 371, 672
SspMI	CTAG	1 cut(s)	626
StyI	CCWWGG	1 cut(s)	467
TaiI	ACGT	4 cut(s)	144, 309, 334, 625
TaqI	TCGA	1 cut(s)	690
TasI	AATT	4 cut(s)	59, 156, 371, 672
TatI	WGTACW	3 cut(s)	483, 582, 700
TfiI	GAWTC	3 cut(s)	9, 73, 617
Tru1I	TTAA	4 cut(s)	54, 168, 407, 642
Tru9I	TTAA	4 cut(s)	54, 168, 407, 642
TscAI	CASTG	3 cut(s)	36, 450, 462
TseI	GCWGC	1 cut(s)	593
TspDTI	ATGAA	1 cut(s)	121
TspRI	CASTG	3 cut(s)	36, 450, 462
VspI	ATTAAT	1 cut(s)	642
XapI	RAATTY	1 cut(s)	672
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	1 cut(s)	69
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	1 cut(s)	626
ZraI	GACGTC	1 cut(s)	142
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.