Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Forward (+)

33892030 .. 33896236

Gene Structure 4207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1279100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTGGTACCATCTCCTTCACCAATAAGAAGCAAGAAAACGATGGCAATAGGAATTCCCACAATCGATCTATCAAATTACAATAGGTCAAAGCTATCAGCACAAATTGTTGAAGCCTGTGAAGAATATGGTTTCTTTAAGGTGGTCAACCATGGTATCCCAAAAGCGGTCATTGAGACAATGGAAACACAAGGGTCTGATTTTTTTGCCAAGCCAACAATCGAGAAGCAACGAGCTGGCCCTGCTTGTCCTTTTGGCTATGGCTGCAAAAATATTGGTCGCAAAGGCGACACCGGAGAGCTTGAGTACCTTATTCTTCAAACCAATCCTCAGTCCATTTCTGACAGATCCAATGATATTTCCGACGACCCTACGAAATTCAGTTGTGCAGTGAATGATTACATAGAAGCAGTTAAAGAATTGGCATGTGAGGTTCTTGATTTGTTGGCCGAGGGACTATGGGTTTCAGACAAGTCTGTGTTCAGCAGGTTCATCAGAGACGTCCAGAGTGACTCCATTCTTAGGTTTAATCACTATCCTCCAGTCAAGGACATCAAGGACTGGGAAACAACACCAAAACAGCATTCCTTCACTAACAACAACAACAATAATCATAGTAGGATTGGATTTGGAGAGCATTCTGACCCTCAGATCTTGACCATCTTAAGATCCAACAACGTGGGGGGCCTTCAGATTTCTCTACGTGATGGCTTGTGGGTTCCCGTGGCTCCGGACCCCAATCAGTTCTTCGTAATGGTTGGTGATGCCTTACAGGCTTTGACGAATGGGAGGTTAGTAAGTGTGAAACATAGAGCACTGGCAAACTCAGTTGTGAAGCCAAGGATGTCAATGGTGTACTTTGGGGCACCACCCCTCAATGCATGTATGTCTCCTCTTCCAGAGATGGTGTCGCCGGAGAAGCCCAGCCTCTACAAACCTTTCACATGGGGTGAATACAAGAAAGCTGCATACACTACACGATTGGGAGATACACGTCTAGACCATTTCAAGATTAATAATCACACCAGCAAGTGCAACGATCAAACTCAATGTCCATGCTTGGACAATCTTGTACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

360

Amino Acids

40.06

Weight (kDa)

7.56

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	19 - 79	3.2e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	171 - 288	1.4e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
Acc36I	ACCTGC	1 cut(s)	477
Acc65I	GGTACC	1 cut(s)	7
AccB1I	GGYRCC	2 cut(s)	7, 865
AccIII	TCCGGA	1 cut(s)	730
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	342, 663
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	2 cut(s)	54, 377
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	4 cut(s)	9, 308, 857, 1074
AfiI	CCNNNNNNNGG	2 cut(s)	166, 522
AflII	CTTAAG	1 cut(s)	664
AflIII	ACRYGT	1 cut(s)	992
AgsI	TTSAA	3 cut(s)	113, 320, 1009
AjiI	CACGTC	1 cut(s)	995
AjuI	GAANNNNNNNTTGG	4 cut(s)	568, 600, 731, 763
AluBI	AGCT	4 cut(s)	94, 236, 301, 965
AluI	AGCT	4 cut(s)	94, 236, 301, 965
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	3 cut(s)	170, 492, 894
AlwI	GGATC	2 cut(s)	342, 663
Aor13HI	TCCGGA	1 cut(s)	730
AoxI	GGCC	3 cut(s)	238, 447, 685
ApeKI	GCWGC	2 cut(s)	264, 965
ApoI	RAATTY	2 cut(s)	54, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	1036, 1068
AseI	ATTAAT	1 cut(s)	1014
Asp718I	GGTACC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	239, 685, 733
AsuHPI	GGTGA	3 cut(s)	12, 773, 962
AvaII	GGWCC	1 cut(s)	733
BaeGI	GKGCMC	1 cut(s)	868
BaeI	ACNNNNGTAYC	2 cut(s)	139, 172
BanI	GGYRCC	2 cut(s)	7, 865
Bbv12I	GWGCWC	1 cut(s)	817
BbvI	GCAGC	2 cut(s)	251, 952
BccI	CCATC	5 cut(s)	19, 37, 668, 701, 898
BciVI	GTATCC	1 cut(s)	167
BcoDI	GTCTC	3 cut(s)	170, 492, 894
BfaI	CTAG	1 cut(s)	998
BfrI	CTTAAG	1 cut(s)	664
BfuAI	ACCTGC	1 cut(s)	477
BfuI	GTATCC	1 cut(s)	167
BglI	GCCNNNNNGGC	1 cut(s)	773
BglII	AGATCT	1 cut(s)	651
BisI	GCNGC	2 cut(s)	265, 966
BlsI	GCNGC	2 cut(s)	266, 967
Bme18I	GGWCC	1 cut(s)	733
BmgBI	CACGTC	1 cut(s)	995
BmgT120I	GGNCC	3 cut(s)	239, 685, 733
BmiI	GGNNCC	6 cut(s)	9, 686, 720, 729, 735, 867
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	1 cut(s)	754
BmuI	ACTGGG	1 cut(s)	571
BpmI	CTGGAG	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	704
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	151, 450, 723, 839
BsaWI	WCCGGW	2 cut(s)	293, 730
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 522
Bse1I	ACTGG	3 cut(s)	542, 566, 822
BseAI	TCCGGA	1 cut(s)	730
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	4 cut(s)	151, 450, 723, 839
BseGI	GGATG	1 cut(s)	849
BseLI	CCNNNNNNNGG	2 cut(s)	166, 522
BseMII	CTCAG	3 cut(s)	344, 662, 840
BseNI	ACTGG	3 cut(s)	542, 566, 822
BseRI	GAGGAG	1 cut(s)	882
BseSI	GKGCMC	1 cut(s)	868
BseXI	GCAGC	2 cut(s)	251, 952
BseYI	CCCAGC	1 cut(s)	923
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	240, 449, 687
BshNI	GGYRCC	2 cut(s)	7, 865
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	817
BsiSI	CCGG	3 cut(s)	294, 731, 914
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	166, 522
BsmAI	GTCTC	3 cut(s)	170, 492, 894
BsmBI	CGTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	468
BsmI	GAATGC	2 cut(s)	583, 637
BsnI	GGCC	3 cut(s)	240, 449, 687
Bsp1286I	GDGCHC	2 cut(s)	817, 868
Bsp13I	TCCGGA	1 cut(s)	730
Bsp143I	GATC	5 cut(s)	67, 347, 651, 668, 1039
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	3 cut(s)	240, 449, 687
BspCNI	CTCAG	3 cut(s)	343, 661, 839
BspDI	ATCGAT	1 cut(s)	66
BspEI	TCCGGA	1 cut(s)	730
BspLI	GGNNCC	6 cut(s)	9, 686, 720, 729, 735, 867
BspMI	ACCTGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	342, 663
BspT107I	GGYRCC	2 cut(s)	7, 865
BspTI	CTTAAG	1 cut(s)	664
BsrI	ACTGG	3 cut(s)	542, 566, 822
BssECI	CCNNGG	4 cut(s)	151, 450, 723, 839
BssMI	GATC	5 cut(s)	67, 347, 651, 668, 1039
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	151, 839
Bst6I	CTCTTC	1 cut(s)	900
BstACI	GRCGYC	1 cut(s)	501
BstAFI	CTTAAG	1 cut(s)	664
BstBAI	YACGTR	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	4 cut(s)	330, 521, 648, 826
BstDSI	CCRYGG	2 cut(s)	151, 723
BstF5I	GGATG	1 cut(s)	849
BstKTI	GATC	5 cut(s)	70, 350, 654, 671, 1042
BstMAI	GTCTC	3 cut(s)	170, 492, 894
BstMBI	GATC	5 cut(s)	67, 347, 651, 668, 1039
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 264, 773, 919
BstNSI	RCATGY	2 cut(s)	429, 885
BstSLI	GKGCMC	1 cut(s)	868
BstV1I	GCAGC	2 cut(s)	251, 952
BstX2I	RGATCY	3 cut(s)	347, 651, 668
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	3 cut(s)	347, 651, 668
Bsu15I	ATCGAT	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	3 cut(s)	240, 449, 687
BsuTUI	ATCGAT	1 cut(s)	66
BtgI	CCRYGG	2 cut(s)	151, 723
BtrI	CACGTC	1 cut(s)	995
BtsCI	GGATG	1 cut(s)	849
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	396, 815
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	238
Cfr13I	GGNCC	3 cut(s)	239, 685, 733
ClaI	ATCGAT	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	8, 307, 856, 1073
CviAII	CATG	5 cut(s)	152, 426, 882, 945, 1056
CviQI	GTAC	4 cut(s)	8, 307, 856, 1073
DdeI	CTNAG	4 cut(s)	330, 521, 648, 826
DpnI	GATC	5 cut(s)	69, 349, 653, 670, 1041
DpnII	GATC	5 cut(s)	67, 347, 651, 668, 1039
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	900
EarI	CTCTTC	1 cut(s)	900
Eco130I	CCWWGG	2 cut(s)	151, 839
Eco47I	GGWCC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	674
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRI	GAATTC	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	151, 839
EcoT22I	ATGCAT	1 cut(s)	883
ErhI	CCWWGG	2 cut(s)	151, 839
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	5 cut(s)	155, 429, 885, 948, 1059
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	5 cut(s)	151, 425, 881, 944, 1055
Fnu4HI	GCNGC	2 cut(s)	265, 966
FokI	GGATG	1 cut(s)	856
Fsp4HI	GCNGC	2 cut(s)	265, 966
FspBI	CTAG	1 cut(s)	998
GluI	GCNGC	2 cut(s)	265, 966
GsaI	CCCAGC	1 cut(s)	927
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	3 cut(s)	240, 449, 687
HapII	CCGG	3 cut(s)	294, 731, 914
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	5 cut(s)	155, 429, 885, 948, 1059
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	3 cut(s)	294, 731, 914
HphI	GGTGA	3 cut(s)	12, 773, 962
Hpy166II	GTNNAC	2 cut(s)	148, 856
Hpy188I	TCNGA	8 cut(s)	199, 343, 364, 469, 497, 643, 651, 693
Hpy188III	TCNNGA	8 cut(s)	223, 437, 505, 655, 731, 899, 998, 1009
Hpy8I	GTNNAC	2 cut(s)	148, 856
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	3 cut(s)	27, 598, 698
HpyCH4IV	ACGT	4 cut(s)	501, 678, 703, 994
HpyCH4V	TGCA	5 cut(s)	267, 389, 881, 968, 1035
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 264, 773, 919
HpyF3I	CTNAG	4 cut(s)	330, 521, 648, 826
HpySE526I	ACGT	4 cut(s)	501, 678, 703, 994
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	5 cut(s)	155, 429, 885, 948, 1059
Kpn2I	TCCGGA	1 cut(s)	730
KpnI	GGTACC	1 cut(s)	11
Kzo9I	GATC	5 cut(s)	67, 347, 651, 668, 1039
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	2 cut(s)	251, 952
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	1 cut(s)	998
MaeII	ACGT	4 cut(s)	501, 678, 703, 994
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	5 cut(s)	69, 349, 653, 670, 1041
MboI	GATC	5 cut(s)	67, 347, 651, 668, 1039
MboII	GAAGA	4 cut(s)	134, 308, 739, 887
MflI	RGATCY	3 cut(s)	347, 651, 668
MhlI	GDGCHC	2 cut(s)	817, 868
MluCI	AATT	5 cut(s)	54, 76, 105, 377, 419
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	2 cut(s)	387, 696
MnlI	CCTC	9 cut(s)	339, 424, 445, 549, 657, 783, 884, 903, 938
Mph1103I	ATGCAT	1 cut(s)	883
MroI	TCCGGA	1 cut(s)	730
MseI	TTAA	5 cut(s)	138, 414, 528, 665, 1014
MspCI	CTTAAG	1 cut(s)	664
MspI	CCGG	3 cut(s)	294, 731, 914
Mva1269I	GAATGC	2 cut(s)	583, 637
MwoI	GCNNNNNNNGC	4 cut(s)	242, 264, 773, 919
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	5 cut(s)	67, 347, 651, 668, 1039
NlaIII	CATG	5 cut(s)	155, 429, 885, 948, 1059
NlaIV	GGNNCC	6 cut(s)	9, 686, 720, 729, 735, 867
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	509
NsiI	ATGCAT	1 cut(s)	883
NspI	RCATGY	2 cut(s)	429, 885
PctI	GAATGC	2 cut(s)	583, 637
PkrI	GCNGC	2 cut(s)	266, 967
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	704
PshBI	ATTAAT	1 cut(s)	1014
PspFI	CCCAGC	1 cut(s)	923
PspN4I	GGNNCC	6 cut(s)	9, 686, 720, 729, 735, 867
PspPI	GGNCC	3 cut(s)	239, 685, 733
PsuI	RGATCY	3 cut(s)	347, 651, 668
RsaI	GTAC	4 cut(s)	9, 308, 857, 1074
RsaNI	GTAC	4 cut(s)	8, 307, 856, 1073
SaqAI	TTAA	5 cut(s)	138, 414, 528, 665, 1014
SatI	GCNGC	2 cut(s)	265, 966
Sau3AI	GATC	5 cut(s)	67, 347, 651, 668, 1039
Sau96I	GGNCC	3 cut(s)	239, 685, 733
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	2 cut(s)	817, 868
SfaNI	GCATC	1 cut(s)	754
SinI	GGWCC	1 cut(s)	733
SmlI	CTYRAG	2 cut(s)	302, 664
SmoI	CTYRAG	2 cut(s)	302, 664
Sse9I	AATT	5 cut(s)	54, 76, 105, 377, 419
SsiI	CCGC	1 cut(s)	167
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	1 cut(s)	998
StyI	CCWWGG	2 cut(s)	151, 839
TaiI	ACGT	4 cut(s)	504, 681, 706, 997
TaqI	TCGA	2 cut(s)	66, 222
TasI	AATT	5 cut(s)	54, 76, 105, 377, 419
TatI	WGTACW	1 cut(s)	855
Tru1I	TTAA	5 cut(s)	138, 414, 528, 665, 1014
Tru9I	TTAA	5 cut(s)	138, 414, 528, 665, 1014
TscAI	CASTG	2 cut(s)	396, 822
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	2 cut(s)	264, 965
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	1 cut(s)	481
TspRI	CASTG	2 cut(s)	396, 822
Vha464I	CTTAAG	1 cut(s)	664
VpaK11BI	GGWCC	1 cut(s)	733
VspI	ATTAAT	1 cut(s)	1014
XapI	RAATTY	2 cut(s)	54, 377
XbaI	TCTAGA	1 cut(s)	997
XceI	RCATGY	2 cut(s)	429, 885
XspI	CTAG	1 cut(s)	998
ZraI	GACGTC	1 cut(s)	502
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.