Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Forward (+)

48821317 .. 48824010

Gene Structure 2694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG268200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGTGGTAGCCTCTCCAAACCCGATTCGAAACGAAAAGATCCAGGTCCTCGATCTCCCCGTCATCGACCTCTCCGCCCCTCGCTCAGTGGTCTCGAAGCTCATTGTGAAGGCCTGTGAAGACTATGGTTTCTTCAAGGTGATAAACCATGGCATCCCCGAAGAAGTCATATCGAGAATGGAGGGAGAGAGCCTCGCCTTCTTCTCAAAAACGGTGTCGGAGAAGCAACGTGCAGGGCCGGCCAACCCATTCGGCTACGGATGCAAGAACATAGGCCACAATGGCGACATGGGTGAGGTTGAGTACCTTTTGTTCAACACAGACAAACCCTCCATTGCTCAAAGGTCCAAAACCATCTCAAATGAACCAACCAAATTCAGCGCTGCAGTGAGCGATTACATTGAGGCAGTTAGTGATTTGGCATGTGAGCTTTTGGAGGGGATCGCCGAGGGACTGTGGGTCCCGGACACGTCGGTGTTCAGTAGGCTCATCAGGGACGTCGAGAGCGACTCTGTTTTCAGGCTCAATTACTACCCGCCCACGTCATCGTCGCCAACCTCCAAGGTCGGCTTTGGGGAGCACACTGACCCTCAAATTCTGACTCTACTCCGATCCAACGACGTCGGAGGCCTCCAAATCTCACCGCAGGATGGTGTATGGGTCCCGGTACCGTCAGACCCCGCTGCCTTCTGGGTTAATGTGGGTGACGTGCTGCAGGTGAAATCATCATCTCTCTCACTCTATCTTCTGTTCATTTTTATTTCTCATGGTCATGGTAATCATAAAAGTCTCCCTCCCCCAAAAAAAGAAAGCTCCTCCCTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009987 GO:0010817 GO:0016020 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

275

Amino Acids

29.97

Weight (kDa)

5.28

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	19 - 89	8.9e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 242	1.4e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
AatII	GACGTC	2 cut(s)	501, 624
Acc36I	ACCTGC	1 cut(s)	706
Acc65I	GGTACC	1 cut(s)	667
AccB1I	GGYRCC	1 cut(s)	667
AciI	CCGC	4 cut(s)	75, 536, 644, 681
AclWI	GGATC	3 cut(s)	34, 449, 606
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	2 cut(s)	374, 594
AcyI	GRCGYC	2 cut(s)	498, 621
AfaI	GTAC	2 cut(s)	305, 669
AfeI	AGCGCT	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	650
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	136, 316
AhdI	GACNNNNNGTC	1 cut(s)	458
AjiI	CACGTC	3 cut(s)	471, 543, 709
AjnI	CCWGG	1 cut(s)	42
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	3 cut(s)	100, 430, 813
AluI	AGCT	3 cut(s)	100, 430, 813
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	2 cut(s)	97, 794
AlwI	GGATC	3 cut(s)	34, 449, 606
Aor51HI	AGCGCT	1 cut(s)	382
AoxI	GGCC	5 cut(s)	111, 236, 240, 274, 628
ApeKI	GCWGC	3 cut(s)	383, 683, 712
ApoI	RAATTY	2 cut(s)	374, 594
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
Asp718I	GGTACC	1 cut(s)	667
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	5 cut(s)	46, 236, 345, 460, 661
AsuC2I	CCSGG	2 cut(s)	464, 665
AsuHPI	GGTGA	5 cut(s)	151, 305, 633, 716, 730
AsuII	TTCGAA	1 cut(s)	28
AvaII	GGWCC	4 cut(s)	46, 345, 460, 661
BanI	GGYRCC	1 cut(s)	667
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	3 cut(s)	370, 670, 699
BccI	CCATC	2 cut(s)	362, 644
BciT130I	CCWGG	1 cut(s)	44
BcnI	CCSGG	2 cut(s)	464, 665
BcoDI	GTCTC	2 cut(s)	97, 794
BfmI	CTRYAG	2 cut(s)	384, 713
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	706
BglI	GCCNNNNNGGC	1 cut(s)	282
BisI	GCNGC	3 cut(s)	384, 684, 713
BlsI	GCNGC	3 cut(s)	385, 685, 714
Bme1390I	CCNGG	3 cut(s)	44, 464, 665
Bme18I	GGWCC	4 cut(s)	46, 345, 460, 661
BmeRI	GACNNNNNGTC	1 cut(s)	458
BmgBI	CACGTC	3 cut(s)	471, 543, 709
BmgT120I	GGNCC	5 cut(s)	46, 236, 345, 460, 661
BmiI	GGNNCC	5 cut(s)	461, 462, 662, 663, 669
BmrFI	CCNGG	3 cut(s)	44, 464, 665
BmsI	GCATC	2 cut(s)	162, 251
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	4 cut(s)	177, 209, 494, 526
Bpu14I	TTCGAA	1 cut(s)	28
BpuMI	CCSGG	2 cut(s)	464, 665
BsaHI	GRCGYC	2 cut(s)	498, 621
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	3 cut(s)	148, 447, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse118I	RCCGGY	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	148, 447, 561
BseGI	GGATG	3 cut(s)	153, 266, 655
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	99, 812
BseRI	GAGGAG	1 cut(s)	805
BseXI	GCAGC	3 cut(s)	370, 670, 699
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	5 cut(s)	113, 238, 242, 276, 630
BshNI	GGYRCC	1 cut(s)	667
BsiHKAI	GWGCWC	1 cut(s)	582
BsiSI	CCGG	3 cut(s)	239, 464, 665
BslFI	GGGAC	4 cut(s)	446, 465, 509, 647
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	2 cut(s)	97, 794
BsmFI	GGGAC	4 cut(s)	446, 465, 509, 647
BsnI	GGCC	5 cut(s)	113, 238, 242, 276, 630
Bso31I	GGTCTC	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	4 cut(s)	39, 52, 441, 611
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	4 cut(s)	75, 536, 644, 681
BspANI	GGCC	5 cut(s)	113, 238, 242, 276, 630
BspCNI	CTCAG	2 cut(s)	98, 813
BspLI	GGNNCC	5 cut(s)	461, 462, 662, 663, 669
BspMAI	CTGCAG	2 cut(s)	388, 717
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	3 cut(s)	34, 449, 606
BspT104I	TTCGAA	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	667
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	148, 447, 561
BssMI	GATC	4 cut(s)	39, 52, 441, 611
BssNI	GRCGYC	2 cut(s)	498, 621
BssT1I	CCWWGG	2 cut(s)	148, 561
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	214, 456, 672
BstACI	GRCGYC	2 cut(s)	498, 621
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	85, 821
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	3 cut(s)	153, 266, 655
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	4 cut(s)	42, 55, 444, 614
BstMAI	GTCTC	2 cut(s)	97, 794
BstMBI	GATC	4 cut(s)	39, 52, 441, 611
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 261, 282
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	3 cut(s)	42, 462, 663
BstSFI	CTRYAG	2 cut(s)	384, 713
BstV1I	GCAGC	3 cut(s)	370, 670, 699
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	5 cut(s)	113, 238, 242, 276, 630
BtgI	CCRYGG	1 cut(s)	148
BtrI	CACGTC	3 cut(s)	471, 543, 709
BtsCI	GGATG	3 cut(s)	153, 266, 655
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	3 cut(s)	93, 393, 582
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	5 cut(s)	46, 236, 345, 460, 661
Csp6I	GTAC	2 cut(s)	304, 668
CviAII	CATG	5 cut(s)	149, 289, 423, 767, 773
CviQI	GTAC	2 cut(s)	304, 668
DdeI	CTNAG	2 cut(s)	85, 821
DpnI	GATC	4 cut(s)	41, 54, 443, 613
DpnII	GATC	4 cut(s)	39, 52, 441, 611
DriI	GACNNNNNGTC	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	240
Eam1105I	GACNNNNNGTC	1 cut(s)	458
EciI	GGCGGA	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	148, 561
Eco147I	AGGCCT	2 cut(s)	113, 630
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	4 cut(s)	46, 345, 460, 661
Eco47III	AGCGCT	1 cut(s)	382
EcoO109I	RGGNCCY	3 cut(s)	46, 460, 661
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	2 cut(s)	148, 561
ErhI	CCWWGG	2 cut(s)	148, 561
FaeI	CATG	5 cut(s)	152, 292, 426, 770, 776
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	4 cut(s)	446, 465, 509, 647
FatI	CATG	5 cut(s)	148, 288, 422, 766, 772
FauI	CCCGC	2 cut(s)	543, 688
Fnu4HI	GCNGC	3 cut(s)	384, 684, 713
FokI	GGATG	3 cut(s)	140, 273, 662
FseI	GGCCGGCC	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	384, 684, 713
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	3 cut(s)	384, 684, 713
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	5 cut(s)	113, 238, 242, 276, 630
HapII	CCGG	3 cut(s)	239, 464, 665
HhaI	GCGC	1 cut(s)	383
Hin1I	GRCGYC	2 cut(s)	498, 621
Hin1II	CATG	5 cut(s)	152, 292, 426, 770, 776
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HinfI	GANTC	3 cut(s)	25, 509, 601
HpaII	CCGG	3 cut(s)	239, 464, 665
HphI	GGTGA	5 cut(s)	151, 305, 633, 716, 730
Hpy188I	TCNGA	5 cut(s)	220, 600, 611, 626, 676
Hpy188III	TCNNGA	3 cut(s)	94, 174, 502
Hpy99I	CGWCG	5 cut(s)	475, 503, 553, 623, 626
HpyAV	CCTTC	3 cut(s)	103, 208, 697
HpyCH4III	ACNGT	3 cut(s)	214, 456, 672
HpyCH4IV	ACGT	6 cut(s)	229, 470, 498, 542, 621, 708
HpyCH4V	TGCA	4 cut(s)	233, 264, 386, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 261, 282
HpyF3I	CTNAG	2 cut(s)	85, 821
HpySE526I	ACGT	6 cut(s)	229, 470, 498, 542, 621, 708
Hsp92I	GRCGYC	2 cut(s)	498, 621
Hsp92II	CATG	5 cut(s)	152, 292, 426, 770, 776
HspAI	GCGC	1 cut(s)	381
KflI	GGGWCCC	2 cut(s)	460, 661
KpnI	GGTACC	1 cut(s)	671
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	39, 52, 441, 611
LmnI	GCTCC	2 cut(s)	577, 818
Lsp1109I	GCAGC	3 cut(s)	370, 670, 699
LweI	GCATC	2 cut(s)	162, 251
MaeII	ACGT	6 cut(s)	229, 470, 498, 542, 621, 708
MaeIII	GTNAC	1 cut(s)	704
MalI	GATC	4 cut(s)	41, 54, 443, 613
MboI	GATC	4 cut(s)	39, 52, 441, 611
MboII	GAAGA	5 cut(s)	124, 131, 173, 193, 737
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	3 cut(s)	374, 526, 594
MlyI	GAGTC	2 cut(s)	503, 595
MmeI	TCCRAC	3 cut(s)	198, 604, 639
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	1 cut(s)	696
MslI	CAYNNNNRTG	2 cut(s)	473, 771
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	3 cut(s)	239, 464, 665
MspR9I	CCNGG	3 cut(s)	44, 464, 665
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	239, 261, 282
NaeI	GCCGGC	1 cut(s)	240
NciI	CCSGG	2 cut(s)	464, 665
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	4 cut(s)	39, 52, 441, 611
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	5 cut(s)	152, 292, 426, 770, 776
NlaIV	GGNNCC	5 cut(s)	461, 462, 662, 663, 669
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	1 cut(s)	704
NspI	RCATGY	1 cut(s)	426
NspV	TTCGAA	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	473
PaqCI	CACCTGC	1 cut(s)	706
PceI	AGGCCT	2 cut(s)	113, 630
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 504
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	462
PkrI	GCNGC	3 cut(s)	385, 685, 714
PleI	GAGTC	2 cut(s)	503, 595
PpsI	GAGTC	2 cut(s)	503, 595
PpuMI	RGGWCCY	3 cut(s)	46, 460, 661
Psp5II	RGGWCCY	3 cut(s)	46, 460, 661
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	5 cut(s)	461, 462, 662, 663, 669
PspPI	GGNCC	5 cut(s)	46, 236, 345, 460, 661
PspPPI	RGGWCCY	3 cut(s)	46, 460, 661
PsrI	GAACNNNNNNTAC	2 cut(s)	296, 328
PstI	CTGCAG	2 cut(s)	388, 717
PsuI	RGATCY	1 cut(s)	39
RigI	GGCCGGCC	1 cut(s)	242
RsaI	GTAC	2 cut(s)	305, 669
RsaNI	GTAC	2 cut(s)	304, 668
RseI	CAYNNNNRTG	2 cut(s)	473, 771
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	3 cut(s)	384, 684, 713
Sau3AI	GATC	4 cut(s)	39, 52, 441, 611
Sau96I	GGNCC	5 cut(s)	46, 236, 345, 460, 661
SchI	GAGTC	2 cut(s)	503, 595
ScrFI	CCNGG	3 cut(s)	44, 464, 665
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	2 cut(s)	162, 251
SfcI	CTRYAG	2 cut(s)	384, 713
SfuI	TTCGAA	1 cut(s)	28
SinI	GGWCC	4 cut(s)	46, 345, 460, 661
SmiMI	CAYNNNNRTG	2 cut(s)	473, 771
Sse9I	AATT	3 cut(s)	374, 526, 594
SseBI	AGGCCT	2 cut(s)	113, 630
SsiI	CCGC	4 cut(s)	75, 536, 644, 681
StuI	AGGCCT	2 cut(s)	113, 630
StyD4I	CCNGG	3 cut(s)	42, 462, 663
StyI	CCWWGG	2 cut(s)	148, 561
TaaI	ACNGT	3 cut(s)	214, 456, 672
TaiI	ACGT	6 cut(s)	232, 473, 501, 545, 624, 711
TaqI	TCGA	6 cut(s)	28, 51, 66, 95, 173, 501
TasI	AATT	3 cut(s)	374, 526, 594
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	3 cut(s)	93, 393, 589
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	3 cut(s)	383, 683, 712
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	2 cut(s)	378, 742
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	3 cut(s)	93, 393, 589
VpaK11BI	GGWCC	4 cut(s)	46, 345, 460, 661
XapI	RAATTY	2 cut(s)	374, 594
XceI	RCATGY	1 cut(s)	426
ZraI	GACGTC	2 cut(s)	499, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.