Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000869.1

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Forward (+)

171595 .. 176256

Gene Structure 4662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000869.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgcttcaaatcgctgcacaagattcagggggtagcatctacatcccaaggcgcttccaaagaactgaactttatcgtctggggtggctggaatcggaagaaaatggcgttgactcaaactgctacagtaaacttcccaggctcgatgcgtcgttttccggccaagacaccgtgaatgtttgtgggcatcttgtggtgaattacgacaatgagatgatcctctttggcaagggcgttgctatgggtggtcgaggagggtcaattgacccctatgactatagcttatatgtttcagttatatttgatgatggcggcatggtgattgaaggggcgacgactgctgttttttttttgctggaggggttgctagttgttagatgtggttgggtttgtgttttgagcacattcaatttttgtatagacatttgggatccgagtagatttatattcatgatattggatatagcaaaacaaagcataactctttccatgttgctagcaaaaaagtccccgaaatcagatccggtccggattgggtttatgttctctcctccttcagccggtgacttgctgtcacagtttgcagaggccaatgaatgtatgaagggtatcttgcctaatctatgtgggtatctaccttctaattttgttggtaaatttattaagtttgtcctgcgtcacatcgtgccttgtgaggttcttgatctggttggagagggtttatgggtttccaacaagtttgtgttcagtggcttcatcagagacgtccagagccacttgattctcccgctgaaccactatccaccactggtggacaaggacccatcgacaaagctagctcattctcgtgcgaataataatactaggattggatttggagagcattccgacccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

298

Amino Acids

33.03

Weight (kDa)

5.52

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	768
AccIII	TCCGGA	1 cut(s)	528
AciI	CCGC	2 cut(s)	312, 788
AclWI	GGATC	4 cut(s)	211, 425, 438, 515
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	656
AcuI	CTGAAG	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	765
AdeI	CACNNNGTG	1 cut(s)	685
AfiI	CCNNNNNNNGG	1 cut(s)	560
AgsI	TTSAA	3 cut(s)	8, 326, 409
AhdI	GACNNNNNGTC	1 cut(s)	571
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	3 cut(s)	282, 835, 839
AluI	AGCT	3 cut(s)	282, 835, 839
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	756
AlwI	GGATC	4 cut(s)	211, 425, 438, 515
Aor13HI	TCCGGA	1 cut(s)	528
AoxI	GGCC	2 cut(s)	160, 588
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	526, 820
AsuHPI	GGTGA	3 cut(s)	208, 331, 575
AsuNHI	GCTAGC	2 cut(s)	496, 835
AvaII	GGWCC	2 cut(s)	526, 820
BamHI	GGATCC	1 cut(s)	430
BauI	CACGAG	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	404
BccI	CCATC	2 cut(s)	302, 832
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	756
BfaI	CTAG	4 cut(s)	368, 497, 836, 864
BfmI	CTRYAG	2 cut(s)	124, 277
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	2 cut(s)	15, 313
BlsI	GCNGC	2 cut(s)	16, 314
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	2 cut(s)	526, 820
BmeRI	GACNNNNNGTC	1 cut(s)	571
BmgT120I	GGNCC	2 cut(s)	526, 820
BmiI	GGNNCC	2 cut(s)	432, 822
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	45, 136, 196
BmtI	GCTAGC	2 cut(s)	500, 839
BpmI	CTGGAG	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	765
BsaJI	CCNNGG	2 cut(s)	47, 137
BsaWI	WCCGGW	2 cut(s)	523, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	1 cut(s)	813
BseAI	TCCGGA	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	47, 137
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	813
BseRI	GAGGAG	2 cut(s)	267, 540
BshFI	GGCC	2 cut(s)	162, 590
BsiHKAI	GWGCWC	1 cut(s)	404
BsiSI	CCGG	4 cut(s)	159, 524, 529, 561
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmAI	GTCTC	1 cut(s)	756
BsmBI	CGTCTC	1 cut(s)	756
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	2 cut(s)	162, 590
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp13I	TCCGGA	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	216, 430, 520, 703
BspACI	CCGC	2 cut(s)	312, 788
BspANI	GGCC	2 cut(s)	162, 590
BspEI	TCCGGA	1 cut(s)	528
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	432, 822
BspOI	GCTAGC	2 cut(s)	500, 839
BspPI	GGATC	4 cut(s)	211, 425, 438, 515
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	813
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	47, 137
BssMI	GATC	4 cut(s)	216, 430, 520, 703
BssNI	GRCGYC	1 cut(s)	765
BssSI	CACGAG	1 cut(s)	846
BssT1I	CCWWGG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	846
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	3 cut(s)	128, 172, 579
BstACI	GRCGYC	1 cut(s)	765
BstC8I	GCNNGC	2 cut(s)	498, 837
BstDEI	CTNAG	1 cut(s)	894
BstF5I	GGATG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	4 cut(s)	219, 433, 523, 706
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	4 cut(s)	216, 430, 520, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	2 cut(s)	124, 277
BstX2I	RGATCY	2 cut(s)	430, 520
BstYI	RGATCY	2 cut(s)	430, 520
BsuRI	GGCC	2 cut(s)	162, 590
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	754, 806
Cac8I	GCNNGC	2 cut(s)	498, 837
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	2 cut(s)	526, 820
CpoI	CGGWCCG	1 cut(s)	526
CseI	GACGC	2 cut(s)	138, 665
CspI	CGGWCCG	1 cut(s)	526
CviAII	CATG	3 cut(s)	316, 451, 490
DdeI	CTNAG	1 cut(s)	894
DpnI	GATC	4 cut(s)	218, 432, 522, 705
DpnII	GATC	4 cut(s)	216, 430, 520, 703
DraIII	CACNNNGTG	1 cut(s)	685
DriI	GACNNNNNGTC	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	571
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	2 cut(s)	526, 820
Eco57I	CTGAAG	1 cut(s)	540
EcoO109I	RGGNCCY	1 cut(s)	820
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	3 cut(s)	319, 454, 493
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	3 cut(s)	315, 450, 489
FauI	CCCGC	1 cut(s)	795
Fnu4HI	GCNGC	2 cut(s)	15, 313
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	15, 313
FspBI	CTAG	4 cut(s)	368, 497, 836, 864
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	2 cut(s)	15, 313
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	162, 590
HapII	CCGG	4 cut(s)	159, 524, 529, 561
HgaI	GACGC	2 cut(s)	138, 665
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	765
Hin1II	CATG	3 cut(s)	319, 454, 493
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	23, 92, 113, 781
HpaII	CCGG	4 cut(s)	159, 524, 529, 561
HphI	GGTGA	3 cut(s)	208, 331, 575
Hpy166II	GTNNAC	3 cut(s)	112, 131, 814
Hpy188I	TCNGA	5 cut(s)	97, 435, 520, 761, 889
Hpy188III	TCNNGA	4 cut(s)	451, 529, 701, 769
Hpy8I	GTNNAC	3 cut(s)	112, 131, 814
Hpy99I	CGWCG	2 cut(s)	154, 337
HpyAV	CCTTC	4 cut(s)	320, 564, 598, 648
HpyCH4III	ACNGT	3 cut(s)	128, 172, 579
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	2 cut(s)	17, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	894
HpySE526I	ACGT	1 cut(s)	765
Hsp92I	GRCGYC	1 cut(s)	765
Hsp92II	CATG	3 cut(s)	319, 454, 493
HspAI	GCGC	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	216, 430, 520, 703
LweI	GCATC	3 cut(s)	45, 136, 196
MaeI	CTAG	4 cut(s)	368, 497, 836, 864
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	3 cut(s)	563, 573, 677
MalI	GATC	4 cut(s)	218, 432, 522, 705
MboI	GATC	4 cut(s)	216, 430, 520, 703
MboII	GAAGA	1 cut(s)	110
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	2 cut(s)	430, 520
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	5 cut(s)	199, 261, 409, 643, 656
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	691, 756
MnlI	CCTC	8 cut(s)	230, 245, 248, 352, 561, 580, 688, 709
MroI	TCCGGA	1 cut(s)	528
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	790
MspI	CCGG	4 cut(s)	159, 524, 529, 561
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	4 cut(s)	216, 430, 520, 703
NheI	GCTAGC	2 cut(s)	496, 835
NlaIII	CATG	3 cut(s)	319, 454, 493
NlaIV	GGNNCC	2 cut(s)	432, 822
NmuCI	GTSAC	3 cut(s)	563, 573, 677
PagI	TCATGA	1 cut(s)	450
PctI	GAATGC	1 cut(s)	883
PfeI	GAWTC	3 cut(s)	23, 92, 781
PkrI	GCNGC	2 cut(s)	16, 314
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PpuMI	RGGWCCY	1 cut(s)	820
Psp5II	RGGWCCY	1 cut(s)	820
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	432, 822
PspPI	GGNCC	2 cut(s)	526, 820
PspPPI	RGGWCCY	1 cut(s)	820
PsuI	RGATCY	2 cut(s)	430, 520
RseI	CAYNNNNRTG	1 cut(s)	846
Rsr2I	CGGWCCG	1 cut(s)	526
RsrII	CGGWCCG	1 cut(s)	526
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	2 cut(s)	15, 313
Sau3AI	GATC	4 cut(s)	216, 430, 520, 703
Sau96I	GGNCC	2 cut(s)	526, 820
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	6 cut(s)	284, 640, 699, 768, 837, 841
SfaNI	GCATC	3 cut(s)	45, 136, 196
SfcI	CTRYAG	2 cut(s)	124, 277
SinI	GGWCC	2 cut(s)	526, 820
SmiMI	CAYNNNNRTG	1 cut(s)	846
Sse9I	AATT	5 cut(s)	199, 261, 409, 643, 656
SsiI	CCGC	2 cut(s)	312, 788
SspMI	CTAG	4 cut(s)	368, 497, 836, 864
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	3 cut(s)	128, 172, 579
TaiI	ACGT	1 cut(s)	768
TaqI	TCGA	3 cut(s)	144, 250, 827
TasI	AATT	5 cut(s)	199, 261, 409, 643, 656
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	3 cut(s)	23, 92, 781
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	2 cut(s)	754, 813
TseFI	GTSAC	3 cut(s)	563, 573, 677
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	3 cut(s)	563, 573, 677
TspDTI	ATGAA	4 cut(s)	439, 609, 617, 745
TspRI	CASTG	2 cut(s)	754, 813
VpaK11BI	GGWCC	2 cut(s)	526, 820
XapI	RAATTY	1 cut(s)	656
XspI	CTAG	4 cut(s)	368, 497, 836, 864
ZraI	GACGTC	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.