Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Forward (+)

23858008 .. 23861310

Gene Structure 3303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20730.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTGGTAGCCTCTCCAAATCCGAATGGAAACGAGAAGATCCAGCTCGTCGATCTCCCCGTCATCGACCTTTCCCTCCCTCGATCAGTGGTCTCGAAGCTCATTGTGAAGGCCTGTGAGGGCTATGGTTTCTTCATGGTGATAAACCACGGCGTTCCAAAAGAAGCCATATCGAGAATGGAGGAAGAGAGCCTTACCTTCTTCTCCAAAACGGCGTCGGAGAAGCAACGTGCTGGGCCGGCCAACCCATTCGGCTACGGAAGCAAGAACATAGGCCACAATGGCGACATGGGTGAGGTCGAGTACCTTCTGTTCAACACAGACAAAGCCTCCATTGCTCAAAGGTGCAAAACCATCTCAGACGATCCAACCAAATTCAGCTCTGCAGTGAGTGATTACATTGAGGCCGTTAGGGAATTGGCATGTGAGCTTTTGGAGGTGATCGCCGAGGGGCTGTGGGTCCCGGACACGTCGGTGTTCAGTAGGCTCATCACTGACGTCGAGAGCGACTCGGTTTTCCGGCTTAATTACTATCCGCCAACGTCATCGTCGCCAACCTCCAAAATCGGGTTCGGGGAGCACACTGACCCTCAGATTCTGACTCTCCTCAGATCCAACGACGTCGGAGGCCTCCAGATCTCACCGCAAGATGGTGTTTGGGTCCCGGTGACGTCCGACCCCGCTGCCTTCTGTGTTAATGTGGGTGACGCTCTGCAGGCGATGACAAATGGAAGATTTGTGAGCGTAAGACACAGAGCCTTAACCAACTCCTTCAAGTCAAGAATGTCGATGGCGCTTTTCTCAGGCCCTCCTCTAAATGCAACCATGAAAGCTCTCCCAGAAATGGTCACACCAGAGAACCCTCTAGTCTACAAACCATTCACTTGGGCTGAGTACAAGAAAAAGACTTGCTCTCTGCGCCTTGGCGACAGTCGCCTTAATCTCTTCAGAACCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009987 GO:0010817 GO:0016020 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

320

Amino Acids

35.01

Weight (kDa)

5.9

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	19 - 89	2.3e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 241	2e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	501, 624, 674
AccI	GTMKAC	1 cut(s)	870
AciI	CCGC	3 cut(s)	536, 644, 681
AclWI	GGATC	3 cut(s)	34, 359, 606
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	931
AcyI	GRCGYC	4 cut(s)	215, 498, 621, 671
AfaI	GTAC	2 cut(s)	305, 896
AfiI	CCNNNNNNNGG	3 cut(s)	567, 650, 844
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	316, 775
AjiI	CACGTC	1 cut(s)	471
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	5 cut(s)	46, 100, 381, 430, 833
AluI	AGCT	5 cut(s)	46, 100, 381, 430, 833
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	3 cut(s)	34, 359, 606
AlwNI	CAGNNNCTG	1 cut(s)	598
AoxI	GGCC	7 cut(s)	111, 236, 240, 274, 405, 628, 805
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	1 cut(s)	374
AspLEI	GCGC	2 cut(s)	796, 921
AspS9I	GGNCC	4 cut(s)	236, 460, 661, 806
AsuC2I	CCSGG	2 cut(s)	464, 665
AsuHPI	GGTGA	6 cut(s)	151, 305, 451, 633, 679, 716
AvaII	GGWCC	2 cut(s)	460, 661
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	3 cut(s)	362, 644, 784
BceAI	ACGGC	3 cut(s)	166, 228, 392
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BcnI	CCSGG	2 cut(s)	464, 665
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	866
BfmI	CTRYAG	2 cut(s)	384, 713
BfoI	RGCGCY	1 cut(s)	797
BglI	GCCNNNNNGGC	1 cut(s)	282
BglII	AGATCT	1 cut(s)	636
BisI	GCNGC	1 cut(s)	684
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	464, 665
Bme18I	GGWCC	2 cut(s)	460, 661
BmgBI	CACGTC	1 cut(s)	471
BmgT120I	GGNCC	4 cut(s)	236, 460, 661, 806
BmiI	GGNNCC	4 cut(s)	461, 462, 662, 663
BmrFI	CCNGG	2 cut(s)	464, 665
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	1 cut(s)	617
BpuMI	CCSGG	2 cut(s)	464, 665
BsaHI	GRCGYC	4 cut(s)	215, 498, 621, 671
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	3 cut(s)	148, 447, 922
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	567, 650, 844
Bse118I	RCCGGY	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	148, 447, 922
BseLI	CCNNNNNNNGG	3 cut(s)	567, 650, 844
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	5 cut(s)	372, 605, 622, 816, 882
BseRI	GAGGAG	2 cut(s)	596, 801
BseXI	GCAGC	1 cut(s)	670
BseYI	CCCAGC	1 cut(s)	233
BshFI	GGCC	7 cut(s)	113, 238, 242, 276, 407, 630, 807
BsiHKAI	GWGCWC	1 cut(s)	582
BsiSI	CCGG	4 cut(s)	239, 464, 520, 665
BslFI	GGGAC	2 cut(s)	446, 647
BslI	CCNNNNNNNGG	3 cut(s)	567, 650, 844
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	2 cut(s)	446, 647
BsnI	GGCC	7 cut(s)	113, 238, 242, 276, 407, 630, 807
Bso31I	GGTCTC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	7 cut(s)	39, 52, 83, 364, 441, 611, 636
BspACI	CCGC	3 cut(s)	536, 644, 681
BspANI	GGCC	7 cut(s)	113, 238, 242, 276, 407, 630, 807
BspCNI	CTCAG	5 cut(s)	371, 604, 621, 815, 883
BspLI	GGNNCC	4 cut(s)	461, 462, 662, 663
BspMAI	CTGCAG	2 cut(s)	388, 717
BspPI	GGATC	3 cut(s)	34, 359, 606
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	148, 447, 922
BssMI	GATC	7 cut(s)	39, 52, 83, 364, 441, 611, 636
BssNI	GRCGYC	4 cut(s)	215, 498, 621, 671
BssT1I	CCWWGG	1 cut(s)	922
Bst4CI	ACNGT	1 cut(s)	932
Bst6I	CTCTTC	2 cut(s)	180, 950
BstACI	GRCGYC	4 cut(s)	215, 498, 621, 671
BstC8I	GCNNGC	2 cut(s)	240, 717
BstDEI	CTNAG	5 cut(s)	358, 591, 608, 802, 891
BstDSI	CCRYGG	1 cut(s)	148
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	2 cut(s)	796, 921
BstKTI	GATC	7 cut(s)	42, 55, 86, 367, 444, 614, 639
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	7 cut(s)	39, 52, 83, 364, 441, 611, 636
BstMWI	GCNNNNNNNGC	7 cut(s)	239, 261, 282, 335, 716, 918, 933
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	2 cut(s)	462, 663
BstSFI	CTRYAG	2 cut(s)	384, 713
BstV1I	GCAGC	1 cut(s)	670
BstX2I	RGATCY	3 cut(s)	39, 611, 636
BstXI	CCANNNNNNTGG	1 cut(s)	885
BstYI	RGATCY	3 cut(s)	39, 611, 636
BsuRI	GGCC	7 cut(s)	113, 238, 242, 276, 407, 630, 807
BtgI	CCRYGG	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	734
BtrI	CACGTC	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	4 cut(s)	93, 393, 492, 582
Cac8I	GCNNGC	2 cut(s)	240, 717
CaiI	CAGNNNCTG	1 cut(s)	598
CfoI	GCGC	2 cut(s)	796, 921
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	4 cut(s)	236, 460, 661, 806
CseI	GACGC	2 cut(s)	204, 716
Csp6I	GTAC	2 cut(s)	304, 895
CviAII	CATG	4 cut(s)	136, 289, 423, 826
CviQI	GTAC	2 cut(s)	304, 895
DdeI	CTNAG	5 cut(s)	358, 591, 608, 802, 891
DpnI	GATC	7 cut(s)	41, 54, 85, 366, 443, 613, 638
DpnII	GATC	7 cut(s)	39, 52, 83, 364, 441, 611, 636
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	180, 950
EarI	CTCTTC	2 cut(s)	180, 950
EciI	GGCGGA	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	922
Eco147I	AGGCCT	2 cut(s)	113, 630
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	460, 661
Eco57I	CTGAAG	1 cut(s)	931
EcoO109I	RGGNCCY	3 cut(s)	460, 661, 806
EcoT14I	CCWWGG	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	922
FaeI	CATG	4 cut(s)	139, 292, 426, 829
FaiI	YATR	7 cut(s)	126, 137, 170, 272, 290, 424, 827
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	2 cut(s)	446, 647
FatI	CATG	4 cut(s)	135, 288, 422, 825
FauI	CCCGC	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	870
Fnu4HI	GCNGC	1 cut(s)	684
FseI	GGCCGGCC	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	1 cut(s)	866
GlaI	GCGC	2 cut(s)	795, 920
GluI	GCNGC	1 cut(s)	684
GsaI	CCCAGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	617
HaeII	RGCGCY	1 cut(s)	797
HaeIII	GGCC	7 cut(s)	113, 238, 242, 276, 407, 630, 807
HapII	CCGG	4 cut(s)	239, 464, 520, 665
HgaI	GACGC	2 cut(s)	204, 716
HhaI	GCGC	2 cut(s)	796, 921
Hin1I	GRCGYC	4 cut(s)	215, 498, 621, 671
Hin1II	CATG	4 cut(s)	139, 292, 426, 829
Hin6I	GCGC	2 cut(s)	794, 919
HinP1I	GCGC	2 cut(s)	794, 919
HinfI	GANTC	3 cut(s)	509, 595, 601
HpaII	CCGG	4 cut(s)	239, 464, 520, 665
HphI	GGTGA	6 cut(s)	151, 305, 451, 633, 679, 716
Hpy166II	GTNNAC	1 cut(s)	871
Hpy188I	TCNGA	9 cut(s)	24, 220, 361, 594, 600, 611, 626, 676, 950
Hpy188III	TCNNGA	5 cut(s)	94, 174, 502, 634, 780
Hpy8I	GTNNAC	1 cut(s)	871
Hpy99I	CGWCG	7 cut(s)	53, 220, 475, 503, 553, 623, 626
HpyAV	CCTTC	5 cut(s)	103, 208, 317, 697, 781
HpyCH4III	ACNGT	1 cut(s)	932
HpyCH4IV	ACGT	6 cut(s)	229, 470, 498, 542, 621, 671
HpyCH4V	TGCA	4 cut(s)	348, 386, 715, 821
HpyF10VI	GCNNNNNNNGC	7 cut(s)	239, 261, 282, 335, 716, 918, 933
HpyF3I	CTNAG	5 cut(s)	358, 591, 608, 802, 891
HpySE526I	ACGT	6 cut(s)	229, 470, 498, 542, 621, 671
Hsp92I	GRCGYC	4 cut(s)	215, 498, 621, 671
Hsp92II	CATG	4 cut(s)	139, 292, 426, 829
HspAI	GCGC	2 cut(s)	794, 919
KflI	GGGWCCC	2 cut(s)	460, 661
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	7 cut(s)	39, 52, 83, 364, 441, 611, 636
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	1 cut(s)	670
MaeI	CTAG	1 cut(s)	866
MaeII	ACGT	6 cut(s)	229, 470, 498, 542, 621, 671
MaeIII	GTNAC	3 cut(s)	667, 704, 847
MalI	GATC	7 cut(s)	41, 54, 85, 366, 443, 613, 638
MboI	GATC	7 cut(s)	39, 52, 83, 364, 441, 611, 636
MboII	GAAGA	6 cut(s)	49, 124, 193, 197, 744, 937
MflI	RGATCY	3 cut(s)	39, 611, 636
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	3 cut(s)	374, 416, 526
MlyI	GAGTC	2 cut(s)	503, 595
MmeI	TCCRAC	5 cut(s)	198, 392, 604, 639, 699
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	5 cut(s)	525, 696, 761, 939, 958
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	4 cut(s)	239, 464, 520, 665
MspR9I	CCNGG	2 cut(s)	464, 665
MwoI	GCNNNNNNNGC	7 cut(s)	239, 261, 282, 335, 716, 918, 933
NaeI	GCCGGC	1 cut(s)	240
NciI	CCSGG	2 cut(s)	464, 665
NdeII	GATC	7 cut(s)	39, 52, 83, 364, 441, 611, 636
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	4 cut(s)	139, 292, 426, 829
NlaIV	GGNNCC	4 cut(s)	461, 462, 662, 663
NmeAIII	GCCGAG	1 cut(s)	472
NmuCI	GTSAC	3 cut(s)	667, 704, 847
NspI	RCATGY	1 cut(s)	426
OliI	CACNNNNGTG	1 cut(s)	473
PceI	AGGCCT	2 cut(s)	113, 630
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 504
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	595
PfoI	TCCNGGA	1 cut(s)	462
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	2 cut(s)	503, 595
PpsI	GAGTC	2 cut(s)	503, 595
PpuMI	RGGWCCY	2 cut(s)	460, 661
Psp5II	RGGWCCY	2 cut(s)	460, 661
PspFI	CCCAGC	1 cut(s)	233
PspN4I	GGNNCC	4 cut(s)	461, 462, 662, 663
PspPI	GGNCC	4 cut(s)	236, 460, 661, 806
PspPPI	RGGWCCY	2 cut(s)	460, 661
PsrI	GAACNNNNNNTAC	2 cut(s)	296, 328
PstI	CTGCAG	2 cut(s)	388, 717
PstNI	CAGNNNCTG	1 cut(s)	598
PsuI	RGATCY	3 cut(s)	39, 611, 636
RigI	GGCCGGCC	1 cut(s)	242
RsaI	GTAC	2 cut(s)	305, 896
RsaNI	GTAC	2 cut(s)	304, 895
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	5 cut(s)	525, 696, 761, 939, 958
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	7 cut(s)	39, 52, 83, 364, 441, 611, 636
Sau96I	GGNCC	4 cut(s)	236, 460, 661, 806
SchI	GAGTC	2 cut(s)	503, 595
ScrFI	CCNGG	2 cut(s)	464, 665
SduI	GDGCHC	1 cut(s)	582
SfcI	CTRYAG	2 cut(s)	384, 713
SinI	GGWCC	2 cut(s)	460, 661
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	374, 416, 526
SseBI	AGGCCT	2 cut(s)	113, 630
SsiI	CCGC	3 cut(s)	536, 644, 681
SspMI	CTAG	1 cut(s)	866
StuI	AGGCCT	2 cut(s)	113, 630
StyD4I	CCNGG	2 cut(s)	462, 663
StyI	CCWWGG	1 cut(s)	922
TaaI	ACNGT	1 cut(s)	932
TaiI	ACGT	6 cut(s)	232, 473, 501, 545, 624, 674
TaqI	TCGA	8 cut(s)	51, 66, 82, 95, 173, 300, 501, 788
TasI	AATT	3 cut(s)	374, 416, 526
TatI	WGTACW	1 cut(s)	894
TfiI	GAWTC	1 cut(s)	595
Tru1I	TTAA	5 cut(s)	525, 696, 761, 939, 958
Tru9I	TTAA	5 cut(s)	525, 696, 761, 939, 958
TscAI	CASTG	4 cut(s)	93, 393, 499, 589
TseFI	GTSAC	3 cut(s)	667, 704, 847
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	3 cut(s)	667, 704, 847
TspDTI	ATGAA	2 cut(s)	124, 842
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	4 cut(s)	93, 393, 499, 589
VpaK11BI	GGWCC	2 cut(s)	460, 661
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	1 cut(s)	426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	870
XspI	CTAG	1 cut(s)	866
ZraI	GACGTC	3 cut(s)	499, 622, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.