Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Reverse (-)

32309050 .. 32313370

Gene Structure 4321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG278300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGTTGTACCATCTCCTTCTCCGATGCGAACCAAGAAAACCAAAGCAGTAGGGATTCCCACCATCGATCTTTCGACCTACAACCGGTCGAAGCTAGCGGAACTGGTCGTCGAAGCCTGCGAAGAATATGGTTTCTTCAAGGTGGTGAACCATGGCGTTCCAAAAGAGGTCATTGCCAGGATAGAAGAAGAAGGGTTTGATTTTTTCGCCAAACCCGCGGCGGAGAAGCAACGAGCTGGCCCGGCTTCTCCTTTCGGTTATGGAAGCAAAAACATTGGCCGCAATGGCGACATGGGCGAGCTCGAGTACCTTCTTCTTCAATCCAATCCTCTCTCCATTTCTGAAACATCCAATGCCGTCTCCAATGACCCTACAAAATTCAGCTGCGTTGTAAACGACTACATAGAAGCAGTTAAAGAATTGGCATGTGAGGTTCTTGATCTGGTCGGAGAAGGTCTATGGGTTTCGGACAAGTCTGTATTCAGTGGCTTCATTAGAGACGTCCAGAGCGACTCGATTCTCCGGCTGAACCACTATCCACCACTGGTGGATAAGGACCCATCCGCAAAACTAGCTCATCCTTGTGCGAATAACAATACTAGGATTGGATTTGGAGAGCATTCCGACCCCCAGATTTTGACCATTTTGAGATCTAACGATGTCGGAGGCCTTCAGATTTCTCTTTATGATGGCTTGTGGGTTCCAGTCCCGCCGGACTCGAATGAGTTTTTTGTCATGGTCGGTGATGTCTTGCAGGCTTTGACGAATGGTCGGTTTCAGAGTGTGAGGCACAGGGCATTGGCTAACTCTGTAACGAAGCCAAGAATGTCTATGGTCTACTTTGGGGCACCATCCCTAAACGCATGGATCTCGCCCCTTCCTGAGATGGTGTCTCCCCAGAAGCCAAGGTTCTCCAACATATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

308

Amino Acids

33.83

Weight (kDa)

5.63

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	19 - 89	9.9e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	171 - 282	2.2e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	847
AccI	GTMKAC	1 cut(s)	837
AccII	CGCG	1 cut(s)	218
AciI	CCGC	7 cut(s)	98, 216, 218, 221, 280, 564, 710
AclWI	GGATC	1 cut(s)	875
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	656
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	2 cut(s)	9, 308
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgeI	ACCGGT	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	139, 320
AhdI	GACNNNNNGTC	1 cut(s)	768
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	5 cut(s)	94, 236, 301, 384, 575
AluI	AGCT	5 cut(s)	94, 236, 301, 384, 575
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	3 cut(s)	364, 492, 897
AlwI	GGATC	1 cut(s)	875
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	3 cut(s)	238, 277, 667
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	1 cut(s)	377
AsiGI	ACCGGT	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	239, 556
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	157, 755
AsuNHI	GCTAGC	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	556
BaeGI	GKGCMC	1 cut(s)	850
BanI	GGYRCC	1 cut(s)	847
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	6 cut(s)	19, 71, 568, 683, 859, 880
BceAI	ACGGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	2 cut(s)	852, 886
BciT130I	CCWGG	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	3 cut(s)	364, 492, 897
BfaI	CTAG	3 cut(s)	95, 572, 600
BglI	GCCNNNNNGGC	1 cut(s)	285
BglII	AGATCT	1 cut(s)	650
BisI	GCNGC	3 cut(s)	219, 280, 385
BlsI	GCNGC	3 cut(s)	220, 281, 386
Bme1390I	CCNGG	2 cut(s)	178, 242
Bme18I	GGWCC	1 cut(s)	556
BmeRI	GACNNNNNGTC	1 cut(s)	768
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	239, 556
BmiI	GGNNCC	3 cut(s)	558, 702, 849
BmrFI	CCNGG	2 cut(s)	178, 242
BmsI	GCATC	1 cut(s)	15
BmtI	GCTAGC	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	151, 216, 905
BsaWI	WCCGGW	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	3 cut(s)	108, 549, 704
Bse3DI	GCAATG	2 cut(s)	171, 289
BseBI	CCWGG	1 cut(s)	178
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	151, 216, 905
BseGI	GGATG	4 cut(s)	347, 560, 577, 851
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	2 cut(s)	171, 289
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	3 cut(s)	108, 549, 704
BseSI	GKGCMC	1 cut(s)	850
BseXI	GCAGC	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	240, 279, 669
BshNI	GGYRCC	1 cut(s)	847
BshTI	ACCGGT	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	4 cut(s)	85, 242, 523, 713
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	3 cut(s)	364, 492, 897
BsmBI	CGTCTC	2 cut(s)	364, 492
BsmFI	GGGAC	1 cut(s)	692
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	240, 279, 669
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	303, 850
Bsp143I	GATC	4 cut(s)	67, 439, 650, 867
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	7 cut(s)	98, 216, 218, 221, 280, 564, 710
BspANI	GGCC	3 cut(s)	240, 279, 669
BspCNI	CTCAG	1 cut(s)	874
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	3 cut(s)	558, 702, 849
BspOI	GCTAGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	875
BspT107I	GGYRCC	1 cut(s)	847
BsrDI	GCAATG	2 cut(s)	171, 289
BsrFI	RCCGGY	1 cut(s)	84
BsrI	ACTGG	3 cut(s)	108, 549, 704
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	151, 216, 905
BssMI	GATC	4 cut(s)	67, 439, 650, 867
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	151, 905
Bst2UI	CCWGG	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	501
BstC8I	GCNNGC	5 cut(s)	96, 118, 238, 299, 756
BstDEI	CTNAG	1 cut(s)	882
BstDSI	CCRYGG	2 cut(s)	151, 216
BstF5I	GGATG	4 cut(s)	347, 560, 577, 851
BstFNI	CGCG	1 cut(s)	218
BstKTI	GATC	4 cut(s)	70, 442, 653, 870
BstMAI	GTCTC	3 cut(s)	364, 492, 897
BstMBI	GATC	4 cut(s)	67, 439, 650, 867
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 242, 285, 294, 572
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	176, 240
BstSLI	GKGCMC	1 cut(s)	850
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	371
BstX2I	RGATCY	2 cut(s)	650, 867
BstYI	RGATCY	2 cut(s)	650, 867
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	240, 279, 669
BsuTUI	ATCGAT	1 cut(s)	66
BtgI	CCRYGG	2 cut(s)	151, 216
BtsCI	GGATG	4 cut(s)	347, 560, 577, 851
BtsIMutI	CAGTG	2 cut(s)	490, 542
Cac8I	GCNNGC	5 cut(s)	96, 118, 238, 299, 756
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	239, 556
Cfr42I	CCGCGG	1 cut(s)	219
ClaI	ATCGAT	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	8, 307
CspAI	ACCGGT	1 cut(s)	84
CviAII	CATG	5 cut(s)	152, 292, 426, 736, 864
CviQI	GTAC	2 cut(s)	8, 307
DdeI	CTNAG	1 cut(s)	882
DpnI	GATC	4 cut(s)	69, 441, 652, 869
DpnII	GATC	4 cut(s)	67, 439, 650, 867
DriI	GACNNNNNGTC	1 cut(s)	768
EaeI	YGGCCR	1 cut(s)	277
Eam1105I	GACNNNNNGTC	1 cut(s)	768
EciI	GGCGGA	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	2 cut(s)	151, 905
Eco147I	AGGCCT	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	556
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	176
EcoT14I	CCWWGG	2 cut(s)	151, 905
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	2 cut(s)	151, 905
Esp3I	CGTCTC	2 cut(s)	364, 492
FaeI	CATG	5 cut(s)	155, 295, 429, 739, 867
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	5 cut(s)	151, 291, 425, 735, 863
FauI	CCCGC	2 cut(s)	223, 717
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	3 cut(s)	219, 280, 385
FokI	GGATG	4 cut(s)	334, 547, 564, 838
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	219, 280, 385
FspBI	CTAG	3 cut(s)	95, 572, 600
GluI	GCNGC	3 cut(s)	219, 280, 385
HaeIII	GGCC	3 cut(s)	240, 279, 669
HapII	CCGG	4 cut(s)	85, 242, 523, 713
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	5 cut(s)	155, 295, 429, 739, 867
HinfI	GANTC	4 cut(s)	55, 512, 517, 716
HpaII	CCGG	4 cut(s)	85, 242, 523, 713
HphI	GGTGA	2 cut(s)	157, 755
Hpy166II	GTNNAC	3 cut(s)	148, 394, 838
Hpy188I	TCNGA	8 cut(s)	24, 343, 449, 469, 625, 665, 675, 780
Hpy188III	TCNNGA	3 cut(s)	437, 505, 881
Hpy8I	GTNNAC	3 cut(s)	148, 394, 838
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	6 cut(s)	27, 185, 320, 446, 680, 887
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	1 cut(s)	754
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 242, 285, 294, 572
HpyF3I	CTNAG	1 cut(s)	882
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	5 cut(s)	155, 295, 429, 739, 867
KspI	CCGCGG	1 cut(s)	219
Kzo9I	GATC	4 cut(s)	67, 439, 650, 867
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	3 cut(s)	95, 572, 600
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	4 cut(s)	69, 441, 652, 869
MboI	GATC	4 cut(s)	67, 439, 650, 867
MboII	GAAGA	6 cut(s)	127, 134, 197, 200, 305, 308
MflI	RGATCY	2 cut(s)	650, 867
MhlI	GDGCHC	2 cut(s)	303, 850
MluCI	AATT	2 cut(s)	377, 419
MlyI	GAGTC	2 cut(s)	506, 710
MmeI	TCCRAC	3 cut(s)	427, 643, 648
MnlI	CCTC	5 cut(s)	160, 339, 424, 659, 780
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	218, 384
MspI	CCGG	4 cut(s)	85, 242, 523, 713
MspR9I	CCNGG	2 cut(s)	178, 242
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	5 cut(s)	215, 242, 285, 294, 572
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	4 cut(s)	67, 439, 650, 867
NheI	GCTAGC	1 cut(s)	94
NlaIII	CATG	5 cut(s)	155, 295, 429, 739, 867
NlaIV	GGNNCC	3 cut(s)	558, 702, 849
NspI	RCATGY	1 cut(s)	429
PaeR7I	CTCGAG	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 507
PctI	GAATGC	1 cut(s)	619
PfeI	GAWTC	2 cut(s)	55, 517
PinAI	ACCGGT	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	220, 281, 386
PleI	GAGTC	2 cut(s)	506, 710
PpsI	GAGTC	2 cut(s)	506, 710
PpuMI	RGGWCCY	1 cut(s)	556
Psp124BI	GAGCTC	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	3 cut(s)	558, 702, 849
PspPI	GGNCC	2 cut(s)	239, 556
PspPPI	RGGWCCY	1 cut(s)	556
PspXI	VCTCGAGB	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	650, 867
PvuII	CAGCTG	1 cut(s)	384
RsaI	GTAC	2 cut(s)	9, 308
RsaNI	GTAC	2 cut(s)	8, 307
RseI	CAYNNNNRTG	1 cut(s)	582
SacI	GAGCTC	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	3 cut(s)	219, 280, 385
Sau3AI	GATC	4 cut(s)	67, 439, 650, 867
Sau96I	GGNCC	2 cut(s)	239, 556
SchI	GAGTC	2 cut(s)	506, 710
ScrFI	CCNGG	2 cut(s)	178, 242
SduI	GDGCHC	2 cut(s)	303, 850
SfaNI	GCATC	1 cut(s)	15
Sfr274I	CTCGAG	1 cut(s)	302
Sfr303I	CCGCGG	1 cut(s)	219
SgrBI	CCGCGG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	556
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	377, 419
SseBI	AGGCCT	1 cut(s)	669
SsiI	CCGC	7 cut(s)	98, 216, 218, 221, 280, 564, 710
SspMI	CTAG	3 cut(s)	95, 572, 600
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	669
StyD4I	CCNGG	2 cut(s)	176, 240
StyI	CCWWGG	2 cut(s)	151, 905
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	7 cut(s)	66, 74, 89, 111, 303, 515, 719
TasI	AATT	2 cut(s)	377, 419
TauI	GCSGC	2 cut(s)	221, 282
TfiI	GAWTC	2 cut(s)	55, 517
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	490, 549
TseI	GCWGC	1 cut(s)	384
TspDTI	ATGAA	1 cut(s)	481
TspRI	CASTG	2 cut(s)	490, 549
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	429
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	837
XspI	CTAG	3 cut(s)	95, 572, 600
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.