Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Reverse (-)

18603489 .. 18607427

Gene Structure 3939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGTTGTACCGTCTCCTTCTCCGATGCGAACCAAGAAAACCAAGGCAGTAGGGATTCCCACCATCGATCTTTCGACCTACAACAGGTCGAAGCTAGCAGAACTGATCGTCGAAGCCTGTGAAGAATACGGTTTCTTCAAGGTTGTGAACCATGGCGTCCCAAAGGAGGTGATTGCCCGGATAGAAGAAGAAGGGTTTGGTTTCTTCGCAAAACCAGCAGCGGAGAAGCAACGAGCTGGCCCAGCCTCACCATTCGGCTATGGAAGCAAAAACATTGGCCGGAATGGCGACATGGGCGAGCTCGAGTACCTTCTTCTTCAATCCAATCCTCTCTTCATTTCTGAAACATCCAATGCCGTCTCCGATGACCCTACAAAATTCAGCTGCGCCGTAAACGACTATATAGAAGCAGTTAAAGAATTGGCCTGTGAGGTTCTTGATCTGGTCGGAGAGGGTCTATGGATTTCCGATAAGTCTGTGTTGAGTGGTTTCATCAGAGACGTCCAGAGCGACTCGATTCTCCGGCTGAACCACTACCCACCACTGGACAAGGACTTATCGACAAAGCTAGCTCATCCTTGTGCGAATAATAACACTAGGATTGGATTTGGAGAGCATTCCGACCCTCAGATCTTGACCATTTTGAGATCCAACGACGTCGGAGGCCTTCAGATTTGTCTTCATGATGGTCTGTGGGTTCCAGTCCCGCCGGACTCGAATGAGTTCTTTGTCATGGTCGGTGATGCCTTGCAGGCTTTGACGAATGGGAGGTTTGAGAGTGTGAGGCATAGGGCAATGGCAAACTCAGTAACGAAGCCAAGAATGTCTATGGTCTACTTTGGAGCACCATCCCTAAACGCATGGATCTCGCCCCTCCCTGAGATGGTGTCTCCCCAGAAGCCAAGTCTATATAAATCCTTTACATGGGGTCAATACAAGAAAGCTGCATACACTACACGTTTGGGAGATTCTCGTCTCGACAATTTCAAAATTGCAAATAATCCATCTCCATGCTTGGACAATCTTGTTGGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

346

Amino Acids

37.96

Weight (kDa)

5.93

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	19 - 89	1.8e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	171 - 281	1.5e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	504, 660
AccI	GTMKAC	1 cut(s)	834
AciI	CCGC	2 cut(s)	221, 707
AclWI	GGATC	2 cut(s)	642, 872
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	653
AcyI	GRCGYC	3 cut(s)	156, 501, 657
AfaI	GTAC	2 cut(s)	9, 308
AfiI	CCNNNNNNNGG	5 cut(s)	84, 166, 544, 883, 924
AflIII	ACRYGT	1 cut(s)	956
AgsI	TTSAA	3 cut(s)	139, 320, 988
AjuI	GAANNNNNNNTTGG	4 cut(s)	180, 212, 317, 349
AluBI	AGCT	7 cut(s)	94, 236, 301, 384, 568, 572, 944
AluI	AGCT	7 cut(s)	94, 236, 301, 384, 568, 572, 944
Alw21I	GWGCWC	2 cut(s)	303, 847
Alw26I	GTCTC	5 cut(s)	18, 364, 492, 894, 980
AlwI	GGATC	2 cut(s)	642, 872
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	4 cut(s)	238, 277, 423, 664
ApeKI	GCWGC	3 cut(s)	218, 384, 944
ApoI	RAATTY	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	722
AspLEI	GCGC	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	239
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	3 cut(s)	181, 240, 752
AsuNHI	GCTAGC	2 cut(s)	94, 568
AvaI	CYCGRG	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	671
Bbv12I	GWGCWC	2 cut(s)	303, 847
BbvI	GCAGC	3 cut(s)	230, 371, 931
BccI	CCATC	5 cut(s)	71, 680, 856, 877, 1012
BceAI	ACGGC	2 cut(s)	341, 374
BcgI	CGANNNNNNTGC	2 cut(s)	849, 883
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	5 cut(s)	18, 364, 492, 894, 980
BfaI	CTAG	3 cut(s)	95, 569, 597
BglI	GCCNNNNNGGC	2 cut(s)	285, 752
BglII	AGATCT	1 cut(s)	630
BisI	GCNGC	3 cut(s)	219, 385, 945
BlsI	GCNGC	3 cut(s)	220, 386, 946
Bme1390I	CCNGG	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	699
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	2 cut(s)	15, 733
BmtI	GCTAGC	2 cut(s)	98, 572
BpiI	GAAGAC	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	3 cut(s)	156, 501, 657
BsaJI	CCNNGG	2 cut(s)	42, 151
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 166, 544, 883, 924
Bse1I	ACTGG	2 cut(s)	549, 701
Bse3DI	GCAATG	1 cut(s)	801
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	42, 151
BseGI	GGATG	3 cut(s)	347, 574, 848
BseLI	CCNNNNNNNGG	5 cut(s)	84, 166, 544, 883, 924
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	3 cut(s)	641, 819, 870
BseNI	ACTGG	2 cut(s)	549, 701
BseXI	GCAGC	3 cut(s)	230, 371, 931
BseYI	CCCAGC	1 cut(s)	241
BshFI	GGCC	4 cut(s)	240, 279, 425, 666
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	303, 847
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	4 cut(s)	178, 280, 523, 710
BslFI	GGGAC	2 cut(s)	143, 689
BslI	CCNNNNNNNGG	5 cut(s)	84, 166, 544, 883, 924
BsmAI	GTCTC	5 cut(s)	18, 364, 492, 894, 980
BsmBI	CGTCTC	4 cut(s)	18, 364, 492, 980
BsmFI	GGGAC	2 cut(s)	143, 689
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	4 cut(s)	240, 279, 425, 666
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	303, 847
Bsp143I	GATC	6 cut(s)	67, 105, 439, 630, 647, 864
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	2 cut(s)	221, 707
BspANI	GGCC	4 cut(s)	240, 279, 425, 666
BspCNI	CTCAG	3 cut(s)	640, 818, 871
BspDI	ATCGAT	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	1 cut(s)	699
BspOI	GCTAGC	2 cut(s)	98, 572
BspPI	GGATC	2 cut(s)	642, 872
BsrDI	GCAATG	1 cut(s)	801
BsrI	ACTGG	2 cut(s)	549, 701
BssECI	CCNNGG	2 cut(s)	42, 151
BssMI	GATC	6 cut(s)	67, 105, 439, 630, 647, 864
BssNI	GRCGYC	3 cut(s)	156, 501, 657
BssT1I	CCWWGG	2 cut(s)	42, 151
Bst4CI	ACNGT	2 cut(s)	12, 131
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	3 cut(s)	156, 501, 657
BstC8I	GCNNGC	5 cut(s)	96, 238, 299, 570, 753
BstDEI	CTNAG	3 cut(s)	627, 805, 879
BstDSI	CCRYGG	1 cut(s)	151
BstENI	CCTNNNNNAGG	1 cut(s)	82
BstF5I	GGATG	3 cut(s)	347, 574, 848
BstHHI	GCGC	1 cut(s)	389
BstKTI	GATC	6 cut(s)	70, 108, 442, 633, 650, 867
BstMAI	GTCTC	5 cut(s)	18, 364, 492, 894, 980
BstMBI	GATC	6 cut(s)	67, 105, 439, 630, 647, 864
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 242, 264, 285, 294, 752
BstSCI	CCNGG	1 cut(s)	176
BstV1I	GCAGC	3 cut(s)	230, 371, 931
BstV2I	GAAGAC	1 cut(s)	671
BstX2I	RGATCY	3 cut(s)	630, 647, 864
BstYI	RGATCY	3 cut(s)	630, 647, 864
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	240, 279, 425, 666
BsuTUI	ATCGAT	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	347, 574, 848
BtsIMutI	CAGTG	1 cut(s)	542
Cac8I	GCNNGC	5 cut(s)	96, 238, 299, 570, 753
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	239
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	8, 307
CviAII	CATG	7 cut(s)	152, 292, 683, 733, 861, 924, 1011
CviQI	GTAC	2 cut(s)	8, 307
DdeI	CTNAG	3 cut(s)	627, 805, 879
DpnI	GATC	6 cut(s)	69, 107, 441, 632, 649, 866
DpnII	GATC	6 cut(s)	67, 105, 439, 630, 647, 864
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	2 cut(s)	42, 151
Eco147I	AGGCCT	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	301
EcoNI	CCTNNNNNAGG	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	42, 151
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	2 cut(s)	42, 151
Esp3I	CGTCTC	4 cut(s)	18, 364, 492, 980
FaeI	CATG	7 cut(s)	155, 295, 686, 736, 864, 927, 1014
FaqI	GGGAC	2 cut(s)	143, 689
FatI	CATG	7 cut(s)	151, 291, 682, 732, 860, 923, 1010
FauI	CCCGC	1 cut(s)	714
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	3 cut(s)	219, 385, 945
FokI	GGATG	3 cut(s)	334, 561, 835
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	219, 385, 945
FspBI	CTAG	3 cut(s)	95, 569, 597
GlaI	GCGC	1 cut(s)	388
GluI	GCNGC	3 cut(s)	219, 385, 945
GsaI	CCCAGC	1 cut(s)	245
HaeIII	GGCC	4 cut(s)	240, 279, 425, 666
HapII	CCGG	4 cut(s)	178, 280, 523, 710
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	389
Hin1I	GRCGYC	3 cut(s)	156, 501, 657
Hin1II	CATG	7 cut(s)	155, 295, 686, 736, 864, 927, 1014
Hin6I	GCGC	1 cut(s)	387
HinP1I	GCGC	1 cut(s)	387
HinfI	GANTC	5 cut(s)	55, 512, 517, 713, 968
HpaII	CCGG	4 cut(s)	178, 280, 523, 710
HphI	GGTGA	3 cut(s)	181, 240, 752
Hpy166II	GTNNAC	3 cut(s)	148, 394, 835
Hpy188III	TCNNGA	5 cut(s)	437, 505, 634, 683, 977
Hpy8I	GTNNAC	3 cut(s)	148, 394, 835
Hpy99I	CGWCG	3 cut(s)	113, 659, 662
HpyAV	CCTTC	4 cut(s)	27, 185, 320, 677
HpyCH4III	ACNGT	2 cut(s)	12, 131
HpyCH4IV	ACGT	3 cut(s)	501, 657, 958
HpyCH4V	TGCA	3 cut(s)	751, 947, 995
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 242, 264, 285, 294, 752
HpyF3I	CTNAG	3 cut(s)	627, 805, 879
HpySE526I	ACGT	3 cut(s)	501, 657, 958
Hsp92I	GRCGYC	3 cut(s)	156, 501, 657
Hsp92II	CATG	7 cut(s)	155, 295, 686, 736, 864, 927, 1014
HspAI	GCGC	1 cut(s)	387
Kzo9I	GATC	6 cut(s)	67, 105, 439, 630, 647, 864
LmnI	GCTCC	1 cut(s)	842
Lsp1109I	GCAGC	3 cut(s)	230, 371, 931
LweI	GCATC	2 cut(s)	15, 733
MaeI	CTAG	3 cut(s)	95, 569, 597
MaeII	ACGT	3 cut(s)	501, 657, 958
MaeIII	GTNAC	1 cut(s)	808
MalI	GATC	6 cut(s)	69, 107, 441, 632, 649, 866
MboI	GATC	6 cut(s)	67, 105, 439, 630, 647, 864
MboII	GAAGA	9 cut(s)	127, 134, 196, 197, 200, 305, 308, 325, 671
MflI	RGATCY	3 cut(s)	630, 647, 864
MhlI	GDGCHC	2 cut(s)	303, 847
MluCI	AATT	4 cut(s)	377, 419, 982, 990
MlyI	GAGTC	2 cut(s)	506, 707
MmeI	TCCRAC	4 cut(s)	427, 640, 645, 675
MroXI	GAANNNNTTC	1 cut(s)	722
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	2 cut(s)	579, 1009
MspA1I	CMGCKG	2 cut(s)	221, 384
MspI	CCGG	4 cut(s)	178, 280, 523, 710
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	616
MwoI	GCNNNNNNNGC	6 cut(s)	215, 242, 264, 285, 294, 752
NciI	CCSGG	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	6 cut(s)	67, 105, 439, 630, 647, 864
NheI	GCTAGC	2 cut(s)	94, 568
NlaIII	CATG	7 cut(s)	155, 295, 686, 736, 864, 927, 1014
NlaIV	GGNNCC	1 cut(s)	699
PaeR7I	CTCGAG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	682
PceI	AGGCCT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	3 cut(s)	55, 517, 968
PkrI	GCNGC	3 cut(s)	220, 386, 946
PleI	GAGTC	2 cut(s)	506, 707
PpsI	GAGTC	2 cut(s)	506, 707
Psp124BI	GAGCTC	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	699
PspPI	GGNCC	1 cut(s)	239
PspXI	VCTCGAGB	1 cut(s)	302
PsuI	RGATCY	3 cut(s)	630, 647, 864
PvuII	CAGCTG	1 cut(s)	384
RsaI	GTAC	2 cut(s)	9, 308
RsaNI	GTAC	2 cut(s)	8, 307
RseI	CAYNNNNRTG	2 cut(s)	579, 1009
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	3 cut(s)	219, 385, 945
Sau3AI	GATC	6 cut(s)	67, 105, 439, 630, 647, 864
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	2 cut(s)	506, 707
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	303, 847
SfaNI	GCATC	2 cut(s)	15, 733
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	579, 1009
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	4 cut(s)	377, 419, 982, 990
SseBI	AGGCCT	1 cut(s)	666
SsiI	CCGC	2 cut(s)	221, 707
SspMI	CTAG	3 cut(s)	95, 569, 597
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	176
StyI	CCWWGG	2 cut(s)	42, 151
TaaI	ACNGT	2 cut(s)	12, 131
TaiI	ACGT	3 cut(s)	504, 660, 961
TaqI	TCGA	9 cut(s)	66, 74, 89, 111, 303, 515, 560, 716, 978
TasI	AATT	4 cut(s)	377, 419, 982, 990
TfiI	GAWTC	3 cut(s)	55, 517, 968
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	3 cut(s)	218, 384, 944
TspDTI	ATGAA	3 cut(s)	325, 481, 671
TspRI	CASTG	1 cut(s)	549
XagI	CCTNNNNNAGG	1 cut(s)	82
XapI	RAATTY	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	834
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	3 cut(s)	95, 569, 597
ZraI	GACGTC	2 cut(s)	502, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.