Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8169984.1

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 327

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8169984.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ctggttggagaaggtctatgggtttcggacaagtctgtattcagtggcttcatcagagacgtccagagcgactcgattctccggctgaaccactatccaccactggtggataaggacccatccgcaaaactagctcatccttgtgcgaataacaatactaggattggattcggagagcattccgacccccagattttgaccattttgagatccaacgatgtcggaggccttcagatttctctttatgatggcttgtgggttccagtcccgccggactcgaatgagttttttgtcatggtcggtgatgtcttgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

105

Amino Acids

11.55

Weight (kDa)

4.67

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
AciI	CCGC	2 cut(s)	123, 269
AclWI	GGATC	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	60
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	204
AoxI	GGCC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	115
BccI	CCATC	2 cut(s)	127, 242
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	131, 159
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	117, 261
BsaHI	GRCGYC	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	108, 263
BseGI	GGATG	2 cut(s)	119, 136
BseNI	ACTGG	2 cut(s)	108, 263
BshFI	GGCC	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	82, 272
BslFI	GGGAC	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	51
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	2 cut(s)	123, 269
BspANI	GGCC	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	117, 261
BspPI	GGATC	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	108, 263
BssMI	GATC	1 cut(s)	209
BssNI	GRCGYC	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	119, 136
BstKTI	GATC	1 cut(s)	212
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	119, 136
BtsIMutI	CAGTG	2 cut(s)	49, 101
Cfr13I	GGNCC	1 cut(s)	115
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	5 cut(s)	48, 85, 134, 228, 252
CviKI_1	RGCY	5 cut(s)	48, 85, 134, 228, 252
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	1 cut(s)	298
FaiI	YATR	3 cut(s)	19, 246, 296
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	294
FauI	CCCGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	106, 123
FspBI	CTAG	2 cut(s)	131, 159
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	2 cut(s)	82, 272
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	298
HinfI	GANTC	4 cut(s)	71, 76, 168, 275
HpaII	CCGG	2 cut(s)	82, 272
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	6 cut(s)	28, 56, 173, 184, 224, 234
Hpy188III	TCNNGA	1 cut(s)	64
HpyAV	CCTTC	2 cut(s)	5, 239
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	209
LpnPI	CCDG	6 cut(s)	77, 89, 95, 203, 276, 285
MaeI	CTAG	2 cut(s)	131, 159
MaeII	ACGT	1 cut(s)	60
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MflI	RGATCY	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	65, 269
MmeI	TCCRAC	3 cut(s)	202, 207, 237
MnlI	CCTC	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	2 cut(s)	82, 272
Mva1269I	GAATGC	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	117, 261
PceI	AGGCCT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	76, 168
PleI	GAGTC	2 cut(s)	65, 269
PpsI	GAGTC	2 cut(s)	65, 269
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	117, 261
PspPI	GGNCC	1 cut(s)	115
PspPPI	RGGWCCY	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	65, 269
SetI	ASST	3 cut(s)	16, 63, 136
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	141
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	123, 269
SspMI	CTAG	2 cut(s)	131, 159
StuI	AGGCCT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	74, 278
TfiI	GAWTC	2 cut(s)	76, 168
TscAI	CASTG	2 cut(s)	49, 108
TspDTI	ATGAA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	49, 108
VpaK11BI	GGWCC	1 cut(s)	115
XspI	CTAG	2 cut(s)	131, 159
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.