Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000501.1

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Reverse (-)

102328 .. 105152

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000501.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgggcgagctcgagtaccttcttcttcaatccaatcctctctccatttctgaaacatccaatgccgtctccaatgaccctacaaaattcagctgcgttgtaaacaactacatagaagcagttaaagaattggcatgtgaggttcttgatctggttggagaaggtctatgggtttcggacaagtctgtattcagtggcttcatcagagacgtccagagcgactcgattctccggctgaaccactatccaccactggtggataaggacccatccgcaaaactagctcatccttgtgcgaataacaatactaggattggattcggagagcattctgacccccagattttgaccattttgagatccaacgatgtcggaggccttcagatttctctttatgatggcttgtgggttccagtcccgccggactcgaatgagttttttgtcatggtcggtgatgtcttgcaggctttgacgaatgggcggtttcagagtgtgaggcacagggcattggctaactctgtaacgaagccaagaatgtctatggtctactttggggcaccatccctaaacgcatgtatctcgccccttcctgagatggtgtctccccagaagccaagtctgtataaaccattcacatggggtcaatacaagaaagctgcatacactacacgtttgggagattctcgtcttgacaatttcaaaattacaaataatccatctacatgcttggacaatcttgtagatcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

249

Amino Acids

27.53

Weight (kDa)

5.37

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	546
AciI	CCGC	3 cut(s)	273, 419, 481
AclWI	GGATC	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	2 cut(s)	29, 700
AluBI	AGCT	4 cut(s)	10, 93, 284, 656
AluI	AGCT	4 cut(s)	10, 93, 284, 656
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	3 cut(s)	73, 201, 606
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	2 cut(s)	93, 656
ApoI	RAATTY	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	559
BaeI	ACNNNNGTAYC	2 cut(s)	559, 592
BanI	GGYRCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	80, 643
BccI	CCATC	5 cut(s)	277, 392, 568, 589, 724
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	561, 595
BcoDI	GTCTC	3 cut(s)	73, 201, 606
BfaI	CTAG	2 cut(s)	281, 309
BisI	GCNGC	2 cut(s)	94, 657
BlsI	GCNGC	2 cut(s)	95, 658
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	267, 411, 558
BsaHI	GRCGYC	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	258, 413
BseGI	GGATG	4 cut(s)	56, 269, 286, 560
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	258, 413
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	2 cut(s)	80, 643
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	232, 422
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	3 cut(s)	73, 201, 606
BsmBI	CGTCTC	2 cut(s)	73, 201
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	12, 559
Bsp143I	GATC	3 cut(s)	148, 359, 742
BspACI	CCGC	3 cut(s)	273, 419, 481
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	583
BspLI	GGNNCC	3 cut(s)	267, 411, 558
BspPI	GGATC	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	258, 413
BssMI	GATC	3 cut(s)	148, 359, 742
BssNI	GRCGYC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	8, 465
BstDEI	CTNAG	1 cut(s)	591
BstF5I	GGATG	4 cut(s)	56, 269, 286, 560
BstKTI	GATC	3 cut(s)	151, 362, 745
BstMAI	GTCTC	3 cut(s)	73, 201, 606
BstMBI	GATC	3 cut(s)	148, 359, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	3 cut(s)	138, 576, 726
BstSLI	GKGCMC	1 cut(s)	559
BstV1I	GCAGC	2 cut(s)	80, 643
BstX2I	RGATCY	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	636
BstYI	RGATCY	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	4 cut(s)	56, 269, 286, 560
BtsIMutI	CAGTG	2 cut(s)	199, 251
Cac8I	GCNNGC	2 cut(s)	8, 465
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	5 cut(s)	135, 445, 573, 636, 723
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	3 cut(s)	150, 361, 744
DpnII	GATC	3 cut(s)	148, 359, 742
Ecl136II	GAGCTC	1 cut(s)	10
Eco147I	AGGCCT	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	12
Esp3I	CGTCTC	2 cut(s)	73, 201
FaeI	CATG	5 cut(s)	138, 448, 576, 639, 726
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	5 cut(s)	134, 444, 572, 635, 722
FauI	CCCGC	1 cut(s)	426
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	94, 657
FokI	GGATG	4 cut(s)	43, 256, 273, 547
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	94, 657
FspBI	CTAG	2 cut(s)	281, 309
GluI	GCNGC	2 cut(s)	94, 657
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	2 cut(s)	232, 422
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	138, 448, 576, 639, 726
HinfI	GANTC	5 cut(s)	221, 226, 318, 425, 680
HpaII	CCGG	2 cut(s)	232, 422
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	2 cut(s)	103, 547
Hpy188I	TCNGA	8 cut(s)	52, 178, 206, 323, 334, 374, 384, 489
Hpy188III	TCNNGA	4 cut(s)	146, 214, 590, 689
Hpy8I	GTNNAC	2 cut(s)	103, 547
HpyAV	CCTTC	4 cut(s)	29, 155, 389, 596
HpyCH4IV	ACGT	2 cut(s)	210, 670
HpyCH4V	TGCA	2 cut(s)	463, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	2 cut(s)	210, 670
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	5 cut(s)	138, 448, 576, 639, 726
Kzo9I	GATC	3 cut(s)	148, 359, 742
Lsp1109I	GCAGC	2 cut(s)	80, 643
MaeI	CTAG	2 cut(s)	281, 309
MaeII	ACGT	2 cut(s)	210, 670
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	3 cut(s)	150, 361, 744
MboI	GATC	3 cut(s)	148, 359, 742
MboII	GAAGA	2 cut(s)	14, 17
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	2 cut(s)	12, 559
MluCI	AATT	4 cut(s)	86, 128, 694, 702
MlyI	GAGTC	2 cut(s)	215, 419
MmeI	TCCRAC	3 cut(s)	136, 352, 387
MnlI	CCTC	4 cut(s)	48, 133, 368, 489
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	3 cut(s)	291, 634, 721
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	2 cut(s)	232, 422
Mva1269I	GAATGC	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	3 cut(s)	148, 359, 742
NlaIII	CATG	5 cut(s)	138, 448, 576, 639, 726
NlaIV	GGNNCC	3 cut(s)	267, 411, 558
NspI	RCATGY	3 cut(s)	138, 576, 726
PaeR7I	CTCGAG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	226, 318, 680
PkrI	GCNGC	2 cut(s)	95, 658
PleI	GAGTC	2 cut(s)	215, 419
PpsI	GAGTC	2 cut(s)	215, 419
PpuMI	RGGWCCY	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	265
PspN4I	GGNNCC	3 cut(s)	267, 411, 558
PspPI	GGNCC	1 cut(s)	265
PspPPI	RGGWCCY	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	3 cut(s)	291, 634, 721
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	94, 657
Sau3AI	GATC	3 cut(s)	148, 359, 742
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	2 cut(s)	215, 419
SduI	GDGCHC	2 cut(s)	12, 559
SetI	ASST	9 cut(s)	12, 21, 95, 144, 166, 213, 286, 658, 673
Sfr274I	CTCGAG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	3 cut(s)	291, 634, 721
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	4 cut(s)	86, 128, 694, 702
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	3 cut(s)	273, 419, 481
SspMI	CTAG	2 cut(s)	281, 309
SstI	GAGCTC	1 cut(s)	12
StuI	AGGCCT	1 cut(s)	378
TaiI	ACGT	2 cut(s)	213, 673
TaqI	TCGA	3 cut(s)	12, 224, 428
TasI	AATT	4 cut(s)	86, 128, 694, 702
TfiI	GAWTC	3 cut(s)	226, 318, 680
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	199, 258
TseI	GCWGC	2 cut(s)	93, 656
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	2 cut(s)	199, 258
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	3 cut(s)	138, 576, 726
XhoI	CTCGAG	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	2 cut(s)	281, 309
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.