Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Reverse (-)

11637617 .. 11640226

Gene Structure 2610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1148400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGTGGTGGCACCTCCAAACCCAATTAGCAACGAAAAGATCCTGGCCGTTGATCTCCCCATCATAGACCTCTCAGCCGAGAGGTCTCAAGTGAGAACACTCATTGTCAAAGCTTGTGAGGACTATGGTTTCTTCAAAGTCATCAACCATGGCGTCCCAAAAGATATTATATCCACAGTGGAGGAGCAAAGCCTCAGCTTCTTTGCCAAACCAGTGTCCGAGAAGCAAAGAGCAGGACCTTCCGATCCCTTTGGCTATGGCTGTAAGAACATAGGCTTCAGTGGTGATATGGGAGAGGTTGAGTACCTTATTTTCAACACAAACCCAATTTCTATAGCTCAAAGATCCAAAACCATCTCAAATGAGCCTACAAAATTCAGTTCTGCAGTAAGTGGATACATTGCAGCAGCAAGGGATTTGGCATGTGAGCTTTTGGATCTGATTGGTGAGGAACTGTGGGTCCCTGACACATCAGTCTTCAGTAGGCTGATCAGGGGTGTCGACAGTGACTCCGTCTTCAGGCTCAATCACTACCCGCATCTGCACAACAAGCAGGACTTCTGCAAGGACAAGGACACGTCACCCTCCTCCTTAAGCAGCGACATCGGCAAGGTAGGGTTTGGGGAGCATTCTGACCCTCAGATCCTCACCCTCCTCAGATCCAACGACGTGGCCGGCCTCCAAATCTCTCCACAAGATGGGGTTTGGGTCGCTGTGCCCTCTGACCCCACGGCCTTTTGGGTTAATGTGGGTGACGTGTTGCAGGTTGGTCTATTCTCCCTCTCTCTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009987 GO:0010817 GO:0016020 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

265

Amino Acids

28.76

Weight (kDa)

4.86

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	19 - 83	9.1e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 256	9.8e-13	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	473
Acc36I	ACCTGC	1 cut(s)	754
AccB1I	GGYRCC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccI	GTMKAC	1 cut(s)	501
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	6 cut(s)	34, 239, 339, 444, 637, 654
AcoI	YGGCCR	2 cut(s)	45, 672
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	3 cut(s)	262, 463, 502
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	519, 698
AflII	CTTAAG	1 cut(s)	592
AflIII	ACRYGT	2 cut(s)	576, 756
AgsI	TTSAA	2 cut(s)	136, 316
AjiI	CACGTC	3 cut(s)	579, 670, 757
AjnI	CCWGG	1 cut(s)	42
AloI	GAACNNNNNNTCC	2 cut(s)	444, 476
AluBI	AGCT	4 cut(s)	113, 198, 338, 430
AluI	AGCT	4 cut(s)	113, 198, 338, 430
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	6 cut(s)	34, 239, 339, 444, 637, 654
AoxI	GGCC	4 cut(s)	45, 672, 676, 732
ApeKI	GCWGC	3 cut(s)	404, 407, 597
ApoI	RAATTY	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	236, 460
AsuHPI	GGTGA	5 cut(s)	296, 458, 573, 640, 764
AvaII	GGWCC	2 cut(s)	236, 460
BaeGI	GKGCMC	1 cut(s)	720
BanI	GGYRCC	1 cut(s)	10
BbsI	GAAGAC	2 cut(s)	469, 508
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	416, 419, 609
BccI	CCATC	3 cut(s)	68, 362, 692
BceAI	ACGGC	2 cut(s)	32, 747
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BciT130I	CCWGG	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	389
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	90
BfmI	CTRYAG	2 cut(s)	333, 384
BfrI	CTTAAG	1 cut(s)	592
BfuAI	ACCTGC	1 cut(s)	754
BfuI	GTATCC	1 cut(s)	389
BisI	GCNGC	3 cut(s)	405, 408, 598
BlsI	GCNGC	3 cut(s)	406, 409, 599
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	2 cut(s)	236, 460
BmgBI	CACGTC	3 cut(s)	579, 670, 757
BmgT120I	GGNCC	2 cut(s)	236, 460
BmiI	GGNNCC	3 cut(s)	12, 461, 462
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	547
BpiI	GAAGAC	2 cut(s)	469, 508
Bpu10I	CCTNAGC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	148, 729
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	519, 698
Bse118I	RCCGGY	1 cut(s)	674
Bse1I	ACTGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	148, 729
BseLI	CCNNNNNNNGG	2 cut(s)	519, 698
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	4 cut(s)	87, 208, 653, 670
BseNI	ACTGG	1 cut(s)	212
BseRI	GAGGAG	3 cut(s)	197, 577, 644
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	3 cut(s)	416, 419, 609
BsgI	GTGCAG	1 cut(s)	527
BshFI	GGCC	4 cut(s)	47, 674, 678, 734
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	675
BslFI	GGGAC	2 cut(s)	140, 446
BslI	CCNNNNNNNGG	2 cut(s)	519, 698
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	140, 446
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	4 cut(s)	47, 674, 678, 734
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp143I	GATC	8 cut(s)	39, 52, 244, 344, 436, 489, 642, 659
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	4 cut(s)	47, 674, 678, 734
BspCNI	CTCAG	4 cut(s)	86, 207, 652, 669
BspLI	GGNNCC	3 cut(s)	12, 461, 462
BspMAI	CTGCAG	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	754
BspPI	GGATC	6 cut(s)	34, 239, 339, 444, 637, 654
BspT107I	GGYRCC	1 cut(s)	10
BspTI	CTTAAG	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	674
BssECI	CCNNGG	2 cut(s)	148, 729
BssMI	GATC	8 cut(s)	39, 52, 244, 344, 436, 489, 642, 659
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	178, 456, 506
BstACI	GRCGYC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	4 cut(s)	73, 194, 639, 656
BstDSI	CCRYGG	2 cut(s)	148, 729
BstKTI	GATC	8 cut(s)	42, 55, 247, 347, 439, 492, 645, 662
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	8 cut(s)	39, 52, 244, 344, 436, 489, 642, 659
BstMWI	GCNNNNNNNGC	2 cut(s)	550, 606
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	2 cut(s)	333, 384
BstSLI	GKGCMC	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	416, 419, 609
BstV2I	GAAGAC	2 cut(s)	469, 508
BstX2I	RGATCY	5 cut(s)	39, 344, 436, 642, 659
BstXI	CCANNNNNNTGG	1 cut(s)	670
BstYI	RGATCY	5 cut(s)	39, 344, 436, 642, 659
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	4 cut(s)	47, 674, 678, 734
BtgI	CCRYGG	2 cut(s)	148, 729
BtrI	CACGTC	3 cut(s)	579, 670, 757
BtsIMutI	CAGTG	4 cut(s)	183, 219, 286, 511
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	1 cut(s)	676
Cfr10I	RCCGGY	1 cut(s)	674
Cfr13I	GGNCC	2 cut(s)	236, 460
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	2 cut(s)	149, 423
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	4 cut(s)	73, 194, 639, 656
DpnI	GATC	8 cut(s)	41, 54, 246, 346, 438, 491, 644, 661
DpnII	GATC	8 cut(s)	39, 52, 244, 344, 436, 489, 642, 659
DrdI	GACNNNNNNGTC	1 cut(s)	473
DseDI	GACNNNNNNGTC	1 cut(s)	473
EaeI	YGGCCR	2 cut(s)	45, 672
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	2 cut(s)	236, 460
Eco57I	CTGAAG	3 cut(s)	262, 463, 502
EcoO109I	RGGNCCY	2 cut(s)	236, 460
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	152, 426
FaiI	YATR	9 cut(s)	65, 126, 150, 170, 258, 272, 290, 335, 424
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	2 cut(s)	140, 446
FatI	CATG	2 cut(s)	148, 422
FauI	CCCGC	1 cut(s)	543
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	3 cut(s)	405, 408, 598
FseI	GGCCGGCC	1 cut(s)	678
Fsp4HI	GCNGC	3 cut(s)	405, 408, 598
GluI	GCNGC	3 cut(s)	405, 408, 598
HaeIII	GGCC	4 cut(s)	47, 674, 678, 734
HapII	CCGG	1 cut(s)	675
HgaI	GACGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	152, 426
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	1 cut(s)	509
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	5 cut(s)	296, 458, 573, 640, 764
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	7 cut(s)	220, 244, 441, 634, 642, 659, 724
Hpy188III	TCNNGA	1 cut(s)	792
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	1 cut(s)	671
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	3 cut(s)	178, 456, 506
HpyCH4IV	ACGT	3 cut(s)	578, 669, 756
HpyCH4V	TGCA	5 cut(s)	386, 404, 544, 564, 763
HpyF10VI	GCNNNNNNNGC	2 cut(s)	550, 606
HpyF3I	CTNAG	4 cut(s)	73, 194, 639, 656
HpySE526I	ACGT	3 cut(s)	578, 669, 756
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	152, 426
KflI	GGGWCCC	1 cut(s)	460
KroI	GCCGGC	1 cut(s)	674
KroNI	GCCGGC	1 cut(s)	676
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	8 cut(s)	39, 52, 244, 344, 436, 489, 642, 659
LmnI	GCTCC	2 cut(s)	184, 625
Lsp1109I	GCAGC	3 cut(s)	416, 419, 609
LweI	GCATC	1 cut(s)	547
MaeII	ACGT	3 cut(s)	578, 669, 756
MaeIII	GTNAC	3 cut(s)	506, 579, 752
MalI	GATC	8 cut(s)	41, 54, 246, 346, 438, 491, 644, 661
MboI	GATC	8 cut(s)	39, 52, 244, 344, 436, 489, 642, 659
MboII	GAAGA	3 cut(s)	124, 469, 508
MflI	RGATCY	5 cut(s)	39, 344, 436, 642, 659
MhlI	GDGCHC	1 cut(s)	720
MluCI	AATT	3 cut(s)	24, 327, 374
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	687
MroNI	GCCGGC	1 cut(s)	674
MseI	TTAA	2 cut(s)	593, 744
MspCI	CTTAAG	1 cut(s)	592
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	550, 606
NaeI	GCCGGC	1 cut(s)	676
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	8 cut(s)	39, 52, 244, 344, 436, 489, 642, 659
NgoMIV	GCCGGC	1 cut(s)	674
NlaIII	CATG	2 cut(s)	152, 426
NlaIV	GGNNCC	3 cut(s)	12, 461, 462
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	3 cut(s)	506, 579, 752
NspI	RCATGY	1 cut(s)	426
PctI	GAATGC	1 cut(s)	628
PdiI	GCCGGC	1 cut(s)	676
PflFI	GACNNNGTC	1 cut(s)	512
PflMI	CCANNNNNTGG	1 cut(s)	698
PkrI	GCNGC	3 cut(s)	406, 409, 599
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PpuMI	RGGWCCY	2 cut(s)	236, 460
Psp5II	RGGWCCY	2 cut(s)	236, 460
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	12, 461, 462
PspPI	GGNCC	2 cut(s)	236, 460
PspPPI	RGGWCCY	2 cut(s)	236, 460
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	5 cut(s)	39, 344, 436, 642, 659
PsyI	GACNNNGTC	1 cut(s)	512
RigI	GGCCGGCC	1 cut(s)	678
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	593, 744
SatI	GCNGC	3 cut(s)	405, 408, 598
Sau3AI	GATC	8 cut(s)	39, 52, 244, 344, 436, 489, 642, 659
Sau96I	GGNCC	2 cut(s)	236, 460
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	2 cut(s)	333, 384
SinI	GGWCC	2 cut(s)	236, 460
SmlI	CTYRAG	2 cut(s)	87, 592
SmoI	CTYRAG	2 cut(s)	87, 592
Sse9I	AATT	3 cut(s)	24, 327, 374
SsiI	CCGC	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	3 cut(s)	178, 456, 506
TaiI	ACGT	3 cut(s)	581, 672, 759
TaqI	TCGA	1 cut(s)	501
TasI	AATT	3 cut(s)	24, 327, 374
Tru1I	TTAA	2 cut(s)	593, 744
Tru9I	TTAA	2 cut(s)	593, 744
TscAI	CASTG	4 cut(s)	183, 219, 286, 511
TseFI	GTSAC	3 cut(s)	506, 579, 752
TseI	GCWGC	3 cut(s)	404, 407, 597
Tsp45I	GTSAC	3 cut(s)	506, 579, 752
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	4 cut(s)	183, 219, 286, 511
Tth111I	GACNNNGTC	1 cut(s)	512
Van91I	CCANNNNNTGG	1 cut(s)	698
Vha464I	CTTAAG	1 cut(s)	592
VpaK11BI	GGWCC	2 cut(s)	236, 460
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.