Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Reverse (-)

8938879 .. 8942671

Gene Structure 3793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G111900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTGGCAGCCTCTCCAAACCCAATTCACAATGAAAAGATCGAGGCCATTGAACTCCCCGTCATCGACCTTTCGGCCGAGAGGTCCCAAGTGAGGAATCTCATTGTCAAAGCTTGTGAGGACTACGGTTTCTTCAAGGTCATCAACCACGGCGTCCCTCAAGACATTGTAGCCAAACTGGAGGAGCAAAGCCTCAGCTTCTTTGCCAAAACAATGGCCGAGAAGCAAAGAGCCGGGCCAGCCATTCCCCTCGGTTATGGCTGCAAGACCATAGGCTTCAATGGTGATATGGGAGAGGTTGAATACCTTTTGTTCAACACAAACCCAATCTCCGTTGCTCAAAGATCCAAAACAATCTCAAATGAGCCTACCAAATTCAGCTCTGCAGTGAGTGGGTATATTGAAGCAATGAAGGATTTGGCATGTGAGATTCTGGATTTGATTGGTGAGGGATTGTGGGTCCCAGACACATCAGTGTTCAGTAGGCTGATCAGGGACGTCGAAAATGACTCCTTTTTCAGGCTCAATCACTACCCACACCATCTAAACAAGGACTGCACCAGCAACATCAACAGTAGCTGCAGCAGCAAGGTTGGGTTTGGGGCGCATAATGACCCTCAGATCTTGACCCTCCTCAGATCCAACGACGTGGGTGGCCTCCAAATCTCTCCACAAGATGGGCTGTGGGTCCCTGCTCCGTCTGACCCCACTGCATTTTGGGTTAATGTGGGTGACCTGTTGCAGGCCATGACAAATGGAAGATTTGTGAGCGTGAGGCACAGAGCTTTAAACAACTCCTCCAACTCCAAGTCAAGAATGTCCATGGCATATTTTGCAACTCCACCCCTAAATGCATGCATCAATGCTCTTCCAGAAATGGTCACACCAGAGAAGCCTCGTCTCTACAAACCCTTCACTTGGGGTGAGTACAAGAGCACTCTTTACTCTCTCCGCCTCGGCGACACTCGGCTTAACCTCTTCAGAGCCTCGACAAGCGATGAACTTGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009987 GO:0010817 GO:0016020 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

338

Amino Acids

37.25

Weight (kDa)

6.01

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	501
AccB7I	CCANNNNNTGG	1 cut(s)	677
AciI	CCGC	1 cut(s)	952
AclWI	GGATC	2 cut(s)	339, 633
AcoI	YGGCCR	2 cut(s)	75, 216
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	964
AcyI	GRCGYC	2 cut(s)	153, 498
AfaI	GTAC	1 cut(s)	929
AfiI	CCNNNNNNNGG	5 cut(s)	93, 519, 677, 742, 918
AgsI	TTSAA	6 cut(s)	53, 136, 280, 302, 316, 404
AjiI	CACGTC	1 cut(s)	649
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	5 cut(s)	113, 198, 381, 579, 785
AluI	AGCT	5 cut(s)	113, 198, 381, 579, 785
Alw21I	GWGCWC	1 cut(s)	938
Alw26I	GTCTC	1 cut(s)	905
AlwI	GGATC	2 cut(s)	339, 633
AlwNI	CAGNNNCTG	1 cut(s)	579
AoxI	GGCC	6 cut(s)	45, 75, 216, 236, 655, 744
ApeKI	GCWGC	5 cut(s)	8, 261, 579, 582, 585
ApoI	RAATTY	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	4 cut(s)	84, 236, 460, 688
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	4 cut(s)	296, 458, 743, 935
AvaII	GGWCC	3 cut(s)	84, 460, 688
Bbv12I	GWGCWC	1 cut(s)	938
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	5 cut(s)	20, 248, 566, 594, 597
BccI	CCATC	2 cut(s)	549, 671
BceAI	ACGGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	1 cut(s)	986
BclI	TGATCA	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	905
BfmI	CTRYAG	2 cut(s)	384, 580
BglII	AGATCT	1 cut(s)	621
BisI	GCNGC	5 cut(s)	9, 262, 580, 583, 586
BlsI	GCNGC	5 cut(s)	10, 263, 581, 584, 587
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	3 cut(s)	84, 460, 688
BmgBI	CACGTC	1 cut(s)	649
BmgT120I	GGNCC	4 cut(s)	84, 236, 460, 688
BmiI	GGNNCC	5 cut(s)	86, 461, 462, 689, 690
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	867
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	235
BsaHI	GRCGYC	2 cut(s)	153, 498
BsaJI	CCNNGG	4 cut(s)	148, 250, 822, 955
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 782, 812
Bsc4I	CCNNNNNNNGG	5 cut(s)	93, 519, 677, 742, 918
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	414
BseDI	CCNNGG	4 cut(s)	148, 250, 822, 955
BseLI	CCNNNNNNNGG	5 cut(s)	93, 519, 677, 742, 918
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	208, 632, 649
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	3 cut(s)	197, 623, 787
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	5 cut(s)	20, 248, 566, 594, 597
BsgI	GTGCAG	1 cut(s)	541
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	6 cut(s)	47, 77, 218, 238, 657, 746
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	938
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	5 cut(s)	70, 140, 446, 509, 674
BslI	CCNNNNNNNGG	5 cut(s)	93, 519, 677, 742, 918
BsmAI	GTCTC	1 cut(s)	905
BsmBI	CGTCTC	1 cut(s)	905
BsmFI	GGGAC	5 cut(s)	70, 140, 446, 509, 674
BsnI	GGCC	6 cut(s)	47, 77, 218, 238, 657, 746
Bsp1286I	GDGCHC	1 cut(s)	938
Bsp143I	GATC	5 cut(s)	39, 344, 489, 621, 638
Bsp19I	CCATGG	1 cut(s)	822
BspACI	CCGC	1 cut(s)	952
BspANI	GGCC	6 cut(s)	47, 77, 218, 238, 657, 746
BspCNI	CTCAG	3 cut(s)	207, 631, 648
BspLI	GGNNCC	5 cut(s)	86, 461, 462, 689, 690
BspMAI	CTGCAG	2 cut(s)	388, 584
BspPI	GGATC	2 cut(s)	339, 633
BspQI	GCTCTTC	1 cut(s)	873
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	4 cut(s)	148, 250, 822, 955
BssMI	GATC	5 cut(s)	39, 344, 489, 621, 638
BssNI	GRCGYC	2 cut(s)	153, 498
BssT1I	CCWWGG	1 cut(s)	822
Bst4CI	ACNGT	2 cut(s)	128, 575
Bst6I	CTCTTC	2 cut(s)	873, 983
BstACI	GRCGYC	2 cut(s)	153, 498
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstC8I	GCNNGC	3 cut(s)	240, 744, 856
BstDEI	CTNAG	3 cut(s)	194, 618, 635
BstDSI	CCRYGG	2 cut(s)	148, 822
BstEII	GGTNACC	1 cut(s)	731
BstENI	CCTNNNNNAGG	2 cut(s)	517, 740
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	5 cut(s)	42, 347, 492, 624, 641
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	5 cut(s)	39, 344, 489, 621, 638
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 585, 833
BstNSI	RCATGY	2 cut(s)	426, 858
BstPI	GGTNACC	1 cut(s)	731
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	2 cut(s)	384, 580
BstV1I	GCAGC	5 cut(s)	20, 248, 566, 594, 597
BstX2I	RGATCY	3 cut(s)	344, 621, 638
BstXI	CCANNNNNNTGG	2 cut(s)	214, 649
BstYI	RGATCY	3 cut(s)	344, 621, 638
BstZI	CGGCCG	1 cut(s)	75
BsuRI	GGCC	6 cut(s)	47, 77, 218, 238, 657, 746
BtgI	CCRYGG	2 cut(s)	148, 822
BtrI	CACGTC	1 cut(s)	649
BtsI	GCAGTG	2 cut(s)	393, 708
BtsIMutI	CAGTG	3 cut(s)	393, 480, 708
Cac8I	GCNNGC	3 cut(s)	240, 744, 856
CaiI	CAGNNNCTG	1 cut(s)	579
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	4 cut(s)	84, 236, 460, 688
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	928
CviAII	CATG	4 cut(s)	423, 748, 823, 855
CviQI	GTAC	1 cut(s)	928
DdeI	CTNAG	3 cut(s)	194, 618, 635
DpnI	GATC	5 cut(s)	41, 346, 491, 623, 640
DpnII	GATC	5 cut(s)	39, 344, 489, 621, 638
DraI	TTTAAA	1 cut(s)	789
EaeI	YGGCCR	2 cut(s)	75, 216
EagI	CGGCCG	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	873, 983
EarI	CTCTTC	2 cut(s)	873, 983
EciI	GGCGGA	1 cut(s)	941
EclXI	CGGCCG	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	822
Eco47I	GGWCC	3 cut(s)	84, 460, 688
Eco52I	CGGCCG	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	964
Eco91I	GGTNACC	1 cut(s)	731
EcoNI	CCTNNNNNAGG	2 cut(s)	517, 740
EcoO109I	RGGNCCY	3 cut(s)	84, 460, 688
EcoO65I	GGTNACC	1 cut(s)	731
EcoT14I	CCWWGG	1 cut(s)	822
EcoT22I	ATGCAT	2 cut(s)	856, 860
ErhI	CCWWGG	1 cut(s)	822
Esp3I	CGTCTC	1 cut(s)	905
FaeI	CATG	4 cut(s)	426, 751, 826, 858
FaqI	GGGAC	5 cut(s)	70, 140, 446, 509, 674
FatI	CATG	4 cut(s)	422, 747, 822, 854
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	5 cut(s)	9, 262, 580, 583, 586
Fsp4HI	GCNGC	5 cut(s)	9, 262, 580, 583, 586
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	5 cut(s)	9, 262, 580, 583, 586
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	6 cut(s)	47, 77, 218, 238, 657, 746
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	1 cut(s)	607
Hin1I	GRCGYC	2 cut(s)	153, 498
Hin1II	CATG	4 cut(s)	426, 751, 826, 858
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	3 cut(s)	97, 430, 509
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	4 cut(s)	296, 458, 743, 935
Hpy188I	TCNGA	4 cut(s)	621, 638, 703, 983
Hpy188III	TCNNGA	5 cut(s)	161, 434, 625, 813, 872
Hpy99I	CGWCG	2 cut(s)	503, 650
HpyAV	CCTTC	2 cut(s)	406, 922
HpyCH4III	ACNGT	2 cut(s)	128, 575
HpyCH4IV	ACGT	2 cut(s)	498, 648
HpyCH4V	TGCA	9 cut(s)	264, 386, 558, 582, 713, 742, 836, 854, 858
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 585, 833
HpyF3I	CTNAG	3 cut(s)	194, 618, 635
HpySE526I	ACGT	2 cut(s)	498, 648
Hsp92I	GRCGYC	2 cut(s)	153, 498
Hsp92II	CATG	4 cut(s)	426, 751, 826, 858
HspAI	GCGC	1 cut(s)	605
KflI	GGGWCCC	2 cut(s)	460, 688
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	5 cut(s)	39, 344, 489, 621, 638
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	2 cut(s)	184, 700
Lsp1109I	GCAGC	5 cut(s)	20, 248, 566, 594, 597
LweI	GCATC	1 cut(s)	867
MaeII	ACGT	2 cut(s)	498, 648
MaeIII	GTNAC	2 cut(s)	731, 880
MalI	GATC	5 cut(s)	41, 346, 491, 623, 640
MboI	GATC	5 cut(s)	39, 344, 489, 621, 638
MboII	GAAGA	4 cut(s)	124, 771, 860, 970
MflI	RGATCY	3 cut(s)	344, 621, 638
MhlI	GDGCHC	1 cut(s)	938
MluCI	AATT	2 cut(s)	24, 374
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	2 cut(s)	666, 825
Mph1103I	ATGCAT	2 cut(s)	856, 860
MseI	TTAA	3 cut(s)	723, 788, 972
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	239, 585, 833
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	822
NdeII	GATC	5 cut(s)	39, 344, 489, 621, 638
NlaIII	CATG	4 cut(s)	426, 751, 826, 858
NlaIV	GGNNCC	5 cut(s)	86, 461, 462, 689, 690
NmeAIII	GCCGAG	4 cut(s)	103, 244, 936, 946
NmuCI	GTSAC	2 cut(s)	731, 880
NsiI	ATGCAT	2 cut(s)	856, 860
NspI	RCATGY	2 cut(s)	426, 858
OliI	CACNNNNGTG	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	858
PciSI	GCTCTTC	1 cut(s)	873
PfeI	GAWTC	2 cut(s)	97, 430
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	5 cut(s)	10, 263, 581, 584, 587
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PpuMI	RGGWCCY	3 cut(s)	84, 460, 688
Psp5II	RGGWCCY	3 cut(s)	84, 460, 688
PspEI	GGTNACC	1 cut(s)	731
PspN4I	GGNNCC	5 cut(s)	86, 461, 462, 689, 690
PspPI	GGNCC	4 cut(s)	84, 236, 460, 688
PspPPI	RGGWCCY	3 cut(s)	84, 460, 688
PstI	CTGCAG	2 cut(s)	388, 584
PstNI	CAGNNNCTG	1 cut(s)	579
PsuI	RGATCY	3 cut(s)	344, 621, 638
RsaI	GTAC	1 cut(s)	929
RsaNI	GTAC	1 cut(s)	928
RseI	CAYNNNNRTG	1 cut(s)	473
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	3 cut(s)	723, 788, 972
SatI	GCNGC	5 cut(s)	9, 262, 580, 583, 586
Sau3AI	GATC	5 cut(s)	39, 344, 489, 621, 638
Sau96I	GGNCC	4 cut(s)	84, 236, 460, 688
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	938
SfaNI	GCATC	1 cut(s)	867
SfcI	CTRYAG	2 cut(s)	384, 580
SinI	GGWCC	3 cut(s)	84, 460, 688
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
SphI	GCATGC	1 cut(s)	858
Sse9I	AATT	2 cut(s)	24, 374
SsiI	CCGC	1 cut(s)	952
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	2 cut(s)	128, 575
TaiI	ACGT	2 cut(s)	501, 651
TaqI	TCGA	4 cut(s)	42, 66, 501, 989
TasI	AATT	2 cut(s)	24, 374
TatI	WGTACW	1 cut(s)	927
TfiI	GAWTC	2 cut(s)	97, 430
Tru1I	TTAA	3 cut(s)	723, 788, 972
Tru9I	TTAA	3 cut(s)	723, 788, 972
TscAI	CASTG	3 cut(s)	393, 480, 715
TseFI	GTSAC	2 cut(s)	731, 880
TseI	GCWGC	5 cut(s)	8, 261, 579, 582, 585
Tsp45I	GTSAC	2 cut(s)	731, 880
TspDTI	ATGAA	3 cut(s)	48, 425, 1014
TspGWI	ACGGA	2 cut(s)	322, 687
TspRI	CASTG	3 cut(s)	393, 480, 715
Van91I	CCANNNNNTGG	1 cut(s)	677
VpaK11BI	GGWCC	3 cut(s)	84, 460, 688
XagI	CCTNNNNNAGG	2 cut(s)	517, 740
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	2 cut(s)	426, 858
ZraI	GACGTC	1 cut(s)	499
Zsp2I	ATGCAT	2 cut(s)	856, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.