Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020668.1

Orthogroup ID

OG0003019

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 824

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020668.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

gatggcttgtgggttccagtcccgccggactcgaatgagttttttgtcatggtcggtgatgtcttgcaggctttgacgaatgggcggtttcagagtgtgaggcacagggcattggctaactctgtaacgaagccaagaatgtctatggtctactttggggcaccatccctaaacgcatgtatctcgccccttcctgagatggtatctccccagaagccaagtctgtataaaccattcacatggggtcaatacaagaaagctgcatacactacacgtttgggagattctcgtcttgacaatttcaaaattacaaataatccatctacatgcttggacaatcttgtagatcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

117

Amino Acids

13.07

Weight (kDa)

9.04

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02400 AT1G02400
fragaria_vesca	FvH4_1g26760 FvH4_4g20730 FvH4_4g20730
malus_domestica	MD09G1286800.v1.1 MD13G1148400.v1.1 MD16G1148400.v1.1 MD17G1279100.v1.1
prunus_persica	Prupe.1G111900_v2.0.a1 Prupe.3G006700_v2.0.a1
pyrus_communis	pycom13g12780
rosa_chinensis	RchiOBHm_Chr3g0486971 RchiOBHm_Chr4g0426161
rosa_laevigata	RLG00000007314 RLG00000023043
rosa_multiflora	Rmu_co8169984.1_g000001 Rmu_sc0000501.1_g000031 Rmu_sc0000730.1_g000008 Rmu_sc0000869.1_g000024 Rmu_sc0001365.1_g000007 Rmu_sc0020668.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368180 Rroxscaffold_6G00395310 Rroxscaffold_6G00395320
rosa_rugosa	Rorug03G0228800 Rorug03G0228800 Rorug04G0209300
rosa_samantha	Rh3AG278300 Rh3BG313900 Rh3CG312500 Rh3DG308800 Rh4AG266000 Rh4BG272100 Rh4CG285100 Rh4DG268200
rosa_wichuraiana	Rw3G024700 Rw4G023000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	2 cut(s)	23, 85
AflIII	ACRYGT	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	304
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	163, 196
BanI	GGYRCC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	3 cut(s)	172, 193, 328
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	15, 162
Bse1I	ACTGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	17
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	2 cut(s)	23, 85
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	15, 162
BspT107I	GGYRCC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	180, 330
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	69
CviAII	CATG	4 cut(s)	49, 177, 240, 327
CviJI	RGCY	6 cut(s)	6, 71, 116, 133, 217, 260
CviKI_1	RGCY	6 cut(s)	6, 71, 116, 133, 217, 260
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
FaeI	CATG	4 cut(s)	52, 180, 243, 330
FaiI	YATR	7 cut(s)	50, 146, 178, 228, 241, 265, 328
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	4 cut(s)	48, 176, 239, 326
FauI	CCCGC	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	261
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	4 cut(s)	52, 180, 243, 330
HinfI	GANTC	2 cut(s)	29, 284
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	194, 293
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	67, 263
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	4 cut(s)	52, 180, 243, 330
Kzo9I	GATC	1 cut(s)	346
LpnPI	CCDG	6 cut(s)	30, 39, 53, 91, 207, 224
Lsp1109I	GCAGC	1 cut(s)	247
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	2 cut(s)	298, 306
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	1 cut(s)	93
MslI	CAYNNNNRTG	2 cut(s)	238, 325
MspI	CCGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	4 cut(s)	52, 180, 243, 330
NlaIV	GGNNCC	2 cut(s)	15, 162
NspI	RCATGY	2 cut(s)	180, 330
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	15, 162
RseI	CAYNNNNRTG	2 cut(s)	238, 325
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	2 cut(s)	262, 277
SmiMI	CAYNNNNRTG	2 cut(s)	238, 325
Sse9I	AATT	2 cut(s)	298, 306
SsiI	CCGC	2 cut(s)	23, 85
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	298, 306
TfiI	GAWTC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	260
XceI	RCATGY	2 cut(s)	180, 330
XmiI	GTMKAC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.