Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Reverse (-)

607799 .. 609534

Gene Structure 1736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTGATGAAGTGCGGGAAGGGCAAAGTTTGGCTCGATCCCAACGAAAGCTCCGACATCTCCATGGCCAATTCCCGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCAAGATTCACTCTCGTTCCAGAGCTCGCAAAATGAAGATTGCCAAGATGAAGGGTCGTCACTCTGGATACGGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGTAGGATGCGTGTTCTTAGGCGTCTGTTGAAGAAATACAGAGAGACGAAGAAGATTGACAAGCACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGTCTTGATGGAGAGTATCCACAAGTCAAAGGCTGAGAAGGCTAGGGAGAAGACTCTGTCTGATCAGTTTGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTAGGAGAGAGGAGCGTTTAGCTAAGGGTCCCGGTGGAGATGTTGCGCCTGTAGCTGCTCCAGCACCTGCTGCTACACCTGCTCCAACTGCAGCTGTACCGAAGAAGAAGTCTAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

214

Amino Acids

24.61

Weight (kDa)

11.35

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	1.5e-27	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	1.7e-34	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	598, 610
Acc36I	ACCTGC	2 cut(s)	598, 610
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AciI	CCGC	4 cut(s)	25, 33, 51, 112
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	310
AfaI	GTAC	5 cut(s)	250, 279, 359, 371, 621
AflIII	ACRYGT	2 cut(s)	354, 366
AgsI	TTSAA	2 cut(s)	319, 397
AluBI	AGCT	8 cut(s)	16, 87, 130, 188, 260, 545, 578, 617
AluI	AGCT	8 cut(s)	16, 87, 130, 188, 260, 545, 578, 617
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	3 cut(s)	578, 593, 614
ArsI	GACNNNNNNTTYG	1 cut(s)	617
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	555
AsuNHI	GCTAGC	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	565, 580, 626
BccI	CCATC	2 cut(s)	134, 409
BciVI	GTATCC	2 cut(s)	224, 434
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	4 cut(s)	261, 450, 504, 525
BfmI	CTRYAG	2 cut(s)	573, 612
BfuAI	ACCTGC	2 cut(s)	598, 610
BfuI	GTATCC	2 cut(s)	224, 434
BisI	GCNGC	5 cut(s)	26, 33, 579, 594, 615
BlsI	GCNGC	5 cut(s)	27, 34, 580, 595, 616
Bme1390I	CCNGG	1 cut(s)	555
Bme18I	GGWCC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	3 cut(s)	250, 552, 553
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	3 cut(s)	44, 276, 285
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 589, 619
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	3 cut(s)	145, 291, 300
BseMII	CTCAG	1 cut(s)	432
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	3 cut(s)	565, 580, 626
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	537
BsmAI	GTCTC	1 cut(s)	326
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	537
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	73, 469
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	4 cut(s)	25, 33, 51, 112
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	250, 552, 553
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	2 cut(s)	598, 610
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	73, 469
BssNI	GRCGYC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	236, 282
BstACI	GRCGYC	1 cut(s)	310
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	4 cut(s)	30, 190, 505, 522
BstDEI	CTNAG	5 cut(s)	305, 441, 483, 546, 636
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	145, 291, 300
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	2 cut(s)	76, 472
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	2 cut(s)	73, 469
BstNSI	RCATGY	4 cut(s)	358, 370, 376, 524
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	2 cut(s)	573, 612
BstV1I	GCAGC	3 cut(s)	565, 580, 626
BstV2I	GAAGAC	1 cut(s)	464
BsuI	GTATCC	2 cut(s)	224, 434
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	145, 291, 300
BtsIMutI	CAGTG	1 cut(s)	45
BveI	ACCTGC	2 cut(s)	598, 610
Cac8I	GCNNGC	4 cut(s)	30, 190, 505, 522
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	551
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	5 cut(s)	249, 278, 358, 370, 620
CviAII	CATG	6 cut(s)	100, 355, 362, 367, 373, 521
CviQI	GTAC	5 cut(s)	249, 278, 358, 370, 620
DdeI	CTNAG	5 cut(s)	305, 441, 483, 546, 636
DpnI	GATC	2 cut(s)	75, 471
DpnII	GATC	2 cut(s)	73, 469
EaeI	YGGCCR	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	551
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
FaiI	YATR	6 cut(s)	101, 356, 363, 368, 374, 522
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	6 cut(s)	99, 354, 361, 366, 372, 520
FauI	CCCGC	2 cut(s)	44, 119
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	26, 33, 579, 594, 615
FokI	GGATG	3 cut(s)	152, 298, 307
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	5 cut(s)	26, 33, 579, 594, 615
FspBI	CTAG	4 cut(s)	261, 450, 504, 525
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	5 cut(s)	26, 33, 579, 594, 615
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	555
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	571
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	169, 460
HpaII	CCGG	1 cut(s)	555
Hpy188I	TCNGA	3 cut(s)	12, 91, 469
Hpy188III	TCNNGA	7 cut(s)	19, 124, 154, 183, 228, 397, 412
HpyAV	CCTTC	5 cut(s)	49, 130, 208, 238, 439
HpyCH4III	ACNGT	2 cut(s)	236, 282
HpyCH4V	TGCA	1 cut(s)	614
HpyF3I	CTNAG	5 cut(s)	305, 441, 483, 546, 636
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
HspAI	GCGC	1 cut(s)	569
KflI	GGGWCCC	1 cut(s)	551
KpnI	GGTACC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	73, 469
LmnI	GCTCC	5 cut(s)	21, 92, 535, 586, 610
Lsp1109I	GCAGC	3 cut(s)	565, 580, 626
LweI	GCATC	3 cut(s)	44, 276, 285
MaeI	CTAG	4 cut(s)	261, 450, 504, 525
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	75, 471
MboI	GATC	2 cut(s)	73, 469
MboII	GAAGA	8 cut(s)	211, 331, 349, 352, 469, 505, 637, 640
MhlI	GDGCHC	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	1 cut(s)	106
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	2 cut(s)	114, 632
MnlI	CCTC	4 cut(s)	234, 472, 480, 526
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	2 cut(s)	98, 371
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	555
NciI	CCSGG	1 cut(s)	555
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	73, 469
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	6 cut(s)	103, 358, 365, 370, 376, 524
NlaIV	GGNNCC	3 cut(s)	250, 552, 553
NmeAIII	GCCGAG	1 cut(s)	533
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	4 cut(s)	358, 370, 376, 524
PaeI	GCATGC	1 cut(s)	524
PaqCI	CACCTGC	2 cut(s)	598, 610
PciI	ACATGT	2 cut(s)	354, 366
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 87
PfeI	GAWTC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	5 cut(s)	27, 34, 580, 595, 616
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	2 cut(s)	354, 366
Psp124BI	GAGCTC	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	551
PspN4I	GGNNCC	3 cut(s)	250, 552, 553
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	590
PsyI	GACNNNGTC	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	5 cut(s)	250, 279, 359, 371, 621
RsaNI	GTAC	5 cut(s)	249, 278, 358, 370, 620
RseI	CAYNNNNRTG	2 cut(s)	98, 371
SacI	GAGCTC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	5 cut(s)	26, 33, 579, 594, 615
Sau3AI	GATC	2 cut(s)	73, 469
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	3 cut(s)	44, 276, 285
SfcI	CTRYAG	2 cut(s)	573, 612
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	98, 371
SphI	GCATGC	1 cut(s)	524
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	4 cut(s)	25, 33, 51, 112
SspMI	CTAG	4 cut(s)	261, 450, 504, 525
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	236, 282
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	2 cut(s)	28, 35
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	578, 593, 614
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	59, 136, 212, 227
TspRI	CASTG	1 cut(s)	45
Tth111I	GACNNNGTC	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	4 cut(s)	358, 370, 376, 524
XspI	CTAG	4 cut(s)	261, 450, 504, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.