Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004394

Physical Location & Seq

Genomic Coordinates Forward (+)

23071620 .. 23073183

Gene Structure 1564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g23130.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGTTTCGCTCAAGCTCCAGAAGAGGCTCGCCTCCAGCGTCCTCAAGTGCGGTCGCGGCAAGGTCTGGCTCGACCCCAATGAAGTCAGCGAGATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGTTGGTCAAGGATGGTTTCATCATCAGGAAGCCGACCAAGATTCACTCTCGCTCTCGTGCACGTCGTATGAAGGAGGCTAAGAGAAAGGGACGTCACTCTGGATATGGTAAGCGCAAGGGTACCAGGGAGGCAAGGCTTCCTACCAAGATCCTCTGGATGAGGAGGATGCGGGTGCTCAGGCGGTTGCTTCGCAAGTACCGTGAATCAAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAATAAGAGAGTGCTGATGGAGAGCATTCACAAGTCAAAGGCTGAGAAGGCAAGAGAGAAGACTCTGTCTGATCAGTTCGAGGCTAAGCGGGCAAAGAACAAGGCTAGCAGGGAGAGGAAGCACGCCAGGAGAGAGGAACGCTTGGCTCAGGGACCTCAAGAGAAAGCACCAGCACCTGCTGCCCCAGCTGTAGCTCAACCGACACAGGTATCCAAGAAATCAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19e

Protein Analysis

210

Amino Acids

24.49

Weight (kDa)

11.45

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02780 AT3G16780 AT4G02230
fragaria_vesca	FvH4_2g26110 FvH4_4g18800
malus_domestica	MD03G1292100.v1.1 MD11G1306300.v1.1 MD13G1162700.v1.1 MD16G1134200.v1.1 MD16G1162500.v1.1
prunus_persica	Prupe.1G130100_v2.0.a1 Prupe.1G130100_v2.0.a1 Prupe.8G265100_v2.0.a1
pyrus_communis	pycom03g23130 pycom11g26810 pycom13g13900 pycom16g13780
rosa_chinensis	RchiOBHm_Chr4g0423611 RchiOBHm_Chr6g0294481
rosa_laevigata	RLG00000011865
rosa_multiflora	Rmu_sc0000464.1_g000018
rosa_roxburghii	Rroxscaffold_5G00365820 Rroxscaffold_7G00173290
rosa_rugosa	Rorug04G0189000 Rorug06G0245000 Rorug06G0245100
rosa_samantha	Rh4AG248600 Rh4BG253900 Rh4CG261900 Rh6AG357600
rosa_wichuraiana	Rw4G021290 Rw6G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	583
AatII	GACGTC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	583
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	1 cut(s)	57
AciI	CCGC	5 cut(s)	51, 57, 298, 310, 487
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	4 cut(s)	250, 326, 359, 371
AflIII	ACRYGT	2 cut(s)	354, 366
AgsI	TTSAA	1 cut(s)	397
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	251, 524
AluBI	AGCT	3 cut(s)	16, 587, 593
AluI	AGCT	3 cut(s)	16, 587, 593
Alw21I	GWGCWC	2 cut(s)	190, 306
Alw44I	GTGCAC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	1 cut(s)	102
ApaLI	GTGCAC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	578
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	551
AsuNHI	GCTAGC	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	190
BaeI	ACNNNNGTAYC	2 cut(s)	591, 624
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	2 cut(s)	190, 306
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	2 cut(s)	134, 409
BciT130I	CCWGG	2 cut(s)	253, 526
BciVI	GTATCC	1 cut(s)	619
BclI	TGATCA	1 cut(s)	469
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	588
BfuAI	ACCTGC	1 cut(s)	583
BfuI	GTATCC	1 cut(s)	619
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	2 cut(s)	58, 579
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	2 cut(s)	59, 580
Bme1390I	CCNGG	2 cut(s)	253, 526
Bme18I	GGWCC	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	250, 552
BmrFI	CCNGG	2 cut(s)	253, 526
BmsI	GCATC	1 cut(s)	285
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	19
Bpu10I	CCTNAGC	2 cut(s)	305, 546
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	2 cut(s)	29, 540
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	99, 252
BseBI	CCWGG	2 cut(s)	253, 526
BseDI	CCNNGG	2 cut(s)	99, 252
BseGI	GGATG	3 cut(s)	145, 291, 300
BseMII	CTCAG	3 cut(s)	319, 432, 560
BseRI	GAGGAG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	565
BseYI	CCCAGC	1 cut(s)	583
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	190, 306
BslFI	GGGAC	2 cut(s)	231, 564
BsmFI	GGGAC	2 cut(s)	231, 564
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	190, 306
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	93, 276, 469
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	5 cut(s)	51, 57, 298, 310, 487
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	3 cut(s)	318, 433, 559
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	250, 552
BspMI	ACCTGC	1 cut(s)	583
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	99, 252
BssMI	GATC	3 cut(s)	93, 276, 469
BssNI	GRCGYC	1 cut(s)	220
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	253, 526
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	4 cut(s)	30, 489, 505, 522
BstDEI	CTNAG	5 cut(s)	207, 305, 441, 483, 546
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	3 cut(s)	145, 291, 300
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	3 cut(s)	96, 279, 472
BstMBI	GATC	3 cut(s)	93, 276, 469
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 446, 488, 578, 584
BstNI	CCWGG	2 cut(s)	253, 526
BstNSI	RCATGY	2 cut(s)	358, 370
BstSCI	CCNGG	2 cut(s)	251, 524
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	565
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	93, 276
BstYI	RGATCY	2 cut(s)	93, 276
BsuI	GTATCC	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	3 cut(s)	145, 291, 300
BveI	ACCTGC	1 cut(s)	583
Cac8I	GCNNGC	4 cut(s)	30, 489, 505, 522
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	551
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	249, 325, 358, 370
CviAII	CATG	5 cut(s)	100, 355, 362, 367, 373
CviQI	GTAC	4 cut(s)	249, 325, 358, 370
DdeI	CTNAG	5 cut(s)	207, 305, 441, 483, 546
DpnI	GATC	3 cut(s)	95, 278, 471
DpnII	GATC	3 cut(s)	93, 276, 469
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	251, 524
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	103, 358, 365, 370, 376
FaiI	YATR	8 cut(s)	101, 122, 197, 234, 356, 363, 368, 374
FaqI	GGGAC	2 cut(s)	231, 564
FatI	CATG	5 cut(s)	99, 354, 361, 366, 372
FauI	CCCGC	2 cut(s)	291, 480
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	58, 579
FokI	GGATG	3 cut(s)	152, 298, 307
Fsp4HI	GCNGC	2 cut(s)	58, 579
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	2 cut(s)	58, 579
GsaI	CCCAGC	1 cut(s)	587
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	104
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	243
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	5 cut(s)	103, 358, 365, 370, 376
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	169, 332, 460
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	6 cut(s)	19, 154, 228, 283, 397, 557
Hpy8I	GTNNAC	1 cut(s)	188
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	193, 370, 439
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	2 cut(s)	190, 220
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 446, 488, 578, 584
HpyF3I	CTNAG	5 cut(s)	207, 305, 441, 483, 546
HpySE526I	ACGT	2 cut(s)	190, 220
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	5 cut(s)	103, 358, 365, 370, 376
HspAI	GCGC	1 cut(s)	241
KpnI	GGTACC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	93, 276, 469
LmnI	GCTCC	1 cut(s)	21
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	2 cut(s)	190, 220
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	3 cut(s)	95, 278, 471
MboI	GATC	3 cut(s)	93, 276, 469
MboII	GAAGA	3 cut(s)	34, 352, 469
MflI	RGATCY	2 cut(s)	93, 276
MhlI	GDGCHC	2 cut(s)	190, 306
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	1 cut(s)	106
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	454
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	371
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	587
MspR9I	CCNGG	2 cut(s)	253, 526
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	253, 526
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	5 cut(s)	57, 446, 488, 578, 584
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	93, 276, 469
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	5 cut(s)	103, 358, 365, 370, 376
NlaIV	GGNNCC	2 cut(s)	250, 552
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	2 cut(s)	358, 370
PaqCI	CACCTGC	1 cut(s)	583
PciI	ACATGT	2 cut(s)	354, 366
PcsI	WCGNNNNNNNCGW	3 cut(s)	36, 190, 325
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	169, 332
PflFI	GACNNNGTC	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	59, 580
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	2 cut(s)	354, 366
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	251, 524
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	2 cut(s)	251, 524
PspN4I	GGNNCC	2 cut(s)	250, 552
PspPI	GGNCC	1 cut(s)	551
PspPPI	RGGWCCY	1 cut(s)	551
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	2 cut(s)	93, 276
PsyI	GACNNNGTC	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	4 cut(s)	250, 326, 359, 371
RsaNI	GTAC	4 cut(s)	249, 325, 358, 370
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	2 cut(s)	58, 579
Sau3AI	GATC	3 cut(s)	93, 276, 469
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	2 cut(s)	253, 526
SduI	GDGCHC	2 cut(s)	190, 306
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	3 cut(s)	11, 44, 555
SmoI	CTYRAG	3 cut(s)	11, 44, 555
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	5 cut(s)	51, 57, 298, 310, 487
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	251, 524
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	2 cut(s)	193, 223
TaqI	TCGA	2 cut(s)	72, 477
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	169, 332
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	578
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	96, 136, 212, 389
Tth111I	GACNNNGTC	1 cut(s)	463
VneI	GTGCAC	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	2 cut(s)	358, 370
XspI	CTAG	1 cut(s)	504
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.